-
1
-
-
0043009767
-
Differential expression in SAGE: Accounting for normal between-library variation
-
Baggerly, K.A. et al. (2003) Differential expression in SAGE: accounting for normal between-library variation. Bioinformatics, 19, 1477-1483.
-
(2003)
Bioinformatics
, vol.19
, pp. 1477-1483
-
-
Baggerly, K.A.1
-
2
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi, P. and Long, A.D. (2001) A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics, 17, 509-519.
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
3
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B, 57, 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
4
-
-
0033472708
-
A distribution-free multiple test procedure that controls the false discovery rate
-
Benjamini, Y. and Liu, W. (1999) A distribution-free multiple test procedure that controls the false discovery rate. J. Stat. Plan. Inference, 82, 163-170.
-
(1999)
J. Stat. Plan. Inference
, vol.82
, pp. 163-170
-
-
Benjamini, Y.1
Liu, W.2
-
5
-
-
1542784653
-
Empirical bayes analysis of a microarray experiment
-
Efron, B. et al. (2001) Empirical Bayes analysis of a microarray experiment. J. Am. Stat. Assoc., 96, 1151-1160.
-
(2001)
J. Am. Stat. Assoc.
, vol.96
, pp. 1151-1160
-
-
Efron, B.1
-
6
-
-
77955298482
-
BaySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
-
Hardcastle, T.J. and Kelly, K.A. (2010) bay Seq: empirical Bayesian methods for identifying differential expression in sequence count data. BMC Bioinformatics, 11, 422.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 422
-
-
Hardcastle, T.J.1
Kelly, K.A.2
-
7
-
-
33645762226
-
A sharper Bonferroni procedure for multiple tests of significance
-
Hochberg, Y. (1988) A sharper Bonferroni procedure for multiple tests of significance. Biometrika, 75, 800-802.
-
(1988)
Biometrika
, vol.75
, pp. 800-802
-
-
Hochberg, Y.1
-
8
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm, S. (1979) A simple sequentially rejective multiple test procedure. Scand. J. Stat., 6, 65-70.
-
(1979)
Scand. J. Stat.
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
9
-
-
70849088705
-
Agrobacterium tumefaciens promotes tumor induction by modulating pathogen defense in Arabidopsis thaliana
-
Lee, C.W. et al. (2009) Agrobacterium tumefaciens promotes tumor induction by modulating pathogen defense in Arabidopsis thaliana. Plant Cell, 21, 2948-2962.
-
(2009)
Plant Cell
, vol.21
, pp. 2948-2962
-
-
Lee, C.W.1
-
10
-
-
84858041341
-
Differential expression analysis of multifactor RNASeq experiments with respect to biological variation
-
McCarthy, D.J. et al. (2012) Differential expression analysis of multifactor RNASeq experiments with respect to biological variation. Nucleic Acids Res., 40, 4288-4297.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4288-4297
-
-
McCarthy, D.J.1
-
11
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton, M.A. et al. (2001) On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Comput. Biol., 8, 37-52.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
-
12
-
-
0242721216
-
Controlling the family wise error rate in functional neuroimaging: A comparative review
-
Nichols, T. and Hayaska, S. (2003) Controlling the family wise error rate in functional neuroimaging: a comparative review. Stat. Methods Med. Res., 12, 419-446.
-
(2003)
Stat. Methods Med. Res.
, vol.12
, pp. 419-446
-
-
Nichols, T.1
Hayaska, S.2
-
13
-
-
2142854576
-
A mixture model approach to detecting differentially expressed genes with microarray data
-
Pan, W. et al. (2003) A mixture model approach to detecting differentially expressed genes with microarray data. Funct. Integr. Genomics, 3, 117-124.
-
(2003)
Funct. Integr. Genomics
, vol.3
, pp. 117-124
-
-
Pan, W.1
-
14
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
Reiner, A. et al. (2003) Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics, 19, 368-375.
-
(2003)
Bioinformatics
, vol.19
, pp. 368-375
-
-
Reiner, A.1
-
15
-
-
41149085992
-
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
-
Robinson, M.D. and Smyth, G.K. (2008) Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics, 9, 321-332.
-
(2008)
Biostatistics
, vol.9
, pp. 321-332
-
-
Robinson, M.D.1
Smyth, G.K.2
-
16
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing dierentialexpressioninmicroarrayexperiments
-
Article3
-
Smyth, G.K. (2004) Linear models and empirical Bayes methods for assessing dierentialexpressioninmicroarrayexperiments. Stat. Appl. Genet. Mol. Biol., 3, Article3.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
-
-
Smyth, G.K.1
-
17
-
-
18744369640
-
Use of within-array replicate spots for assessing differential expression in microarray experiments
-
Smyth, G.K. et al. (2005) Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics, 21, 2067-2075.
-
(2005)
Bioinformatics
, vol.21
, pp. 2067-2075
-
-
Smyth, G.K.1
-
18
-
-
34147123145
-
The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments
-
Storey, J.D. et al. (2007) The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics, 8, 414-432.
-
(2007)
Biostatistics
, vol.8
, pp. 414-432
-
-
Storey, J.D.1
-
19
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J.D. and Tibshirani, R. (2003) Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA, 100, 9440-9445.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
20
-
-
33750943221
-
Ranking analysis of microarray data: A powerful method for identifying differentially expressed genes
-
Tan, Y.D. et al. (2006) Ranking analysis of microarray data: a powerful method for identifying differentially expressed genes. Genomics, 88, 846-854.
-
(2006)
Genomics
, vol.88
, pp. 846-854
-
-
Tan, Y.D.1
-
21
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V.G. et al. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 98, 5116-5121.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
-
22
-
-
0034602302
-
VirB/D4-dependent protein translocation from Agrobacterium into plant cells
-
Vergunst, A.C. et al. (2000) VirB/D4-dependent protein translocation from Agrobacterium into plant cells. Science, 290, 979-982.
-
(2000)
Science
, vol.290
, pp. 979-982
-
-
Vergunst, A.C.1
-
23
-
-
0344152245
-
Recognition of the Agrobacterium tumefaciens VirE2 translocation signal by the VirB/D4 transport system does not require VirE1
-
Vergunst, A.C. et al. (2003) Recognition of the Agrobacterium tumefaciens VirE2 translocation signal by the VirB/D4 transport system does not require VirE1. Plant Physiol., 133, 978-988.
-
(2003)
Plant Physiol
, vol.133
, pp. 978-988
-
-
Vergunst, A.C.1
|