Erratum to: Early microRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection (mBio, (2014), 5,3 (10.1128/mBio.01241-14));Early MicroRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection

mBio

Volumn 5, Issue 3, 2014, Pages

  Yeruva, Laxmi ^a   Myers, Garry S A ^b   Spencer, Nicole ^c   Creasy, Heather Huot ^b   Adams, Nancy E ^d   Maurelli, Anthony T ^d   McChesney, Grant R ^a   Cleves, Mario A ^c   Ravel, Jacques ^b   Bowlin, Anne ^a   Rank, Roger G ^a  

^a UNIVERSITY OF ARKANSAS FOR MEDICAL SCIENCES   (United States)

^b UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^c ARKANSAS CHILDREN S HOSPITAL   (United States)

^d Uniformed Services University of the Health Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA INTERFERON; BIOLOGICAL MARKER; CCL1 CHEMOKINE; CXCL1 CHEMOKINE; CXCL2 CHEMOKINE; GAMMA INTERFERON; GAMMA INTERFERON INDUCIBLE PROTEIN 10; INTERLEUKIN 6; MACROPHAGE INFLAMMATORY PROTEIN 1ALPHA; MACROPHAGE INFLAMMATORY PROTEIN 1BETA; MICRORNA; MICRORNA 105; MICRORNA 132 3P; MICRORNA 135A 5P; MICRORNA 142 3P; MICRORNA 142 5P; MICRORNA 147 3P; MICRORNA 155 5P; MICRORNA 223 3P; MICRORNA 298 5P; MICRORNA 299A 3P; MICRORNA 325 3P; MICRORNA 410 3P; MONOCYTE CHEMOTACTIC PROTEIN 1; RANTES; RIBOSOME RNA; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG; CHEMOKINE; CYTOKINE; TRANSCRIPTOME;

ANIMAL CELL; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BACTERIAL GROWTH; CHEMOKINESIS; CHLAMYDIA; CHLAMYDIASIS; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; CYTOKINE PRODUCTION; DISEASE SEVERITY; DOWN REGULATION; GENE CONTROL; GENE OVEREXPRESSION; GENETIC VARIABILITY; GENITAL TRACT INFECTION; HUMAN; HUMAN CELL; HYDROSALPINX; IMMUNOPATHOGENESIS; IN VITRO STUDY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; OVIDUCT; PELVIC INFLAMMATORY DISEASE; PHENOTYPIC VARIATION; PRIORITY JOURNAL; PROGNOSIS; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; RNA SEQUENCE; SIGNAL TRANSDUCTION; SINGLE NUCLEOTIDE POLYMORPHISM; SUPERNATANT; UPREGULATION; ANIMAL; BAGG ALBINO MOUSE; C57BL MOUSE; CHLAMYDIA INFECTIONS; DIAGNOSTIC USE; DISEASE MODEL; FEMALE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PATHOGENICITY; PHYSIOLOGY; VIRULENCE;

ANIMALS; BIOLOGICAL MARKERS; CHEMOKINES; CHLAMYDIA; CHLAMYDIA INFECTIONS; CYTOKINES; DISEASE MODELS, ANIMAL; FEMALE; HUMANS; MICE; MICE, INBRED BALB C; MICE, INBRED C57BL; MICRORNAS; MOLECULAR SEQUENCE DATA; PELVIC INFLAMMATORY DISEASE; PROGNOSIS; TRANSCRIPTOME; VIRULENCE;

EID: 84904012160     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.01575-14     Document Type: Erratum

References (50)

1. Miyairi I, Ziebarth J, Laxton JD, Wang X, van Rooijen RN, Williams RW, Lu L, Byrne GI, Cui Y. 2012. Host genetics and Chlamydia disease: prediction and validation of disease severity mechanisms. PLoS One 7: e33781. http://dx. doi. org/10. 1371/journal. pone. 0033781.
2. Barron AL, Pasley JN, Rank RG, White HJ, Mrak RE. 1988. Chlamydial salpingitis in female guinea pigs receiving oral contraceptives. Sex. Transm. Dis. 15: 169-173. http://dx. doi. org/10. 1097/00007435-198807000-00013.
3. Kinghorn GR, Waugh MA. 1981. Oral contraceptive use and prevalence of infection with Chlamydia trachomatis in women. Br. J. Vener. Dis. 57: 187-190.
4. Rank RG, Sanders MM, Kidd AT. 1993. Influence of the estrous cycle on the development of upper genital tract pathology as a result of chlamydial infection in the guinea pig model of pelvic inflammatory disease. Am. J. Pathol. 142: 1291-1296.
5. Marrazzo JM, Wiesenfeld HC, Murray PJ, Busse B, Meyn L, Krohn M, Hillier SL. 2006. Risk factors for cervicitis among women with bacterial vaginosis. J. Infect. Dis. 193: 617-624. http://dx. doi. org/10. 1086/500149.
6. Miyairi I, Mahdi OS, Ouellette SP, Belland RJ, Byrne GI. 2006. Different growth rates of Chlamydia trachomatis biovars reflect pathotype. J. Infect. Dis. 194: 350-357. http://dx. doi. org/10. 1086/505432.
7. Kari L, Whitmire WM, Carlson JH, Crane DD, Reveneau N, Nelson DE, Mabey DC, Bailey RL, Holland MJ, McClarty G, Caldwell HD. 2008. Pathogenic diversity among Chlamydia trachomatis ocular strains in nonhuman primates is affected by subtle genomic variations. J. Infect. Dis. 197: 449-456. http://dx. doi. org/10. 1086/525285.
8. Ramsey KH, Sigar IM, Schripsema JH, Denman CJ, Bowlin AK, Myers GS, Rank RG. 2009. Strain and virulence diversity in the mouse pathogen Chlamydia muridarum. Infect. Immun. 77: 3284-3293. http://dx. doi. org/10. 1128/IAI. 00147-09.
9. Binet R, Bowlin AK, Maurelli AT, Rank RG. 2010. Impact of azithromycin resistance mutations on the virulence and fitness of Chlamydia caviae in guinea pigs. Antimicrob. Agents Chemother. 54: 1094-1101. http://dx. doi. org/10. 1128/AAC. 01321-09.
10. Sturdevant GL, Kari L, Gardner DJ, Olivares-Zavaleta N, Randall LB, Whitmire WM, Carlson JH, Goheen MM, Selleck EM, Martens C, Caldwell HD. 2010. Frameshift mutations in a single novel virulence factor alter the in vivo pathogenicity of Chlamydia trachomatis for the female murine genital tract. Infect. Immun. 78: 3660-3668. http://dx. doi. org/10. 1128/IAI. 00386-10.
11. O'Connell RM, Rao DS, Baltimore D. 2012. microRNA regulation of inflammatory responses. Annu. Rev. Immunol. 30: 295-312. http://dx. doi. org/10. 1146/annurev-immunol-020711-075013.
12. Dai R, Ahmed SA. 2011. MicroRNA, a new paradigm for understanding immunoregulation, inflammation, and autoimmune diseases. Transl. Res. 157: 163-179. http://dx. doi. org/10. 1016/j. trsl. 2011. 01. 007.
13. Ha TY. 2011. MicroRNAs in human diseases: from autoimmune diseases to skin, psychiatric and neurodegenerative diseases. Immune Netw. 11: 227-244. http://dx. doi. org/10. 4110/in. 2011. 11. 5. 227.
14. O'Connell RM, Rao DS, Chaudhuri AA, Baltimore D. 2010. Physiological and pathological roles for microRNAs in the immune system. Nat. Rev. Immunol. 10: 111-122. http://dx. doi. org/10. 1038/nri2708.
15. Xiao B, Liu Z, Li BS, Tang B, Li W, Guo G, Shi Y, Wang F, Wu Y, Tong WD, Guo H, Mao XH, Zou QM. 2009. Induction of microRNA-155 during Helicobacter pylori infection and its negative regulatory role in the inflammatory response. J. Infect. Dis. 200: 916-925. http://dx. doi. org/10. 1086/605443.
16. Liu Y, Wang X, Jiang J, Cao Z, Yang B, Cheng X. 2011. Modulation of T cell cytokine production by miR-144* with elevated expression in patients with pulmonary tuberculosis. Mol. Immunol. 48: 1084-1090. http://dx. doi. org/10. 1016/j. molimm. 2011. 02. 001.
17. Eulalio A, Schulte L, Vogel J. 2012. The mammalian microRNA response to bacterial infections. RNA Biol. 9: 742-750. http://dx. doi. org/10. 4161/rna. 20018.
18. Ryu MS, Langkamp-Henken B, Chang SM, Shankar MN, Cousins RJ. 2011. Genomic analysis, cytokine expression, and microRNA profiling reveal biomarkers of human dietary zinc depletion and homeostasis. Proc. Natl. Acad. Sci. U. S. A. 108: 20970-20975. http://dx. doi. org/10. 1073/pnas. 1117207108.
19. Rank RG, Lacy HM, Goodwin A, Sikes J, Whittimore J, Wyrick PB, Nagarajan UM. 2010. Host chemokine and cytokine response in the endocervix within the first developmental cycle of Chlamydia muridarum. Infect. Immun. 78: 536-544. http://dx. doi. org/10. 1128/IAI. 00772-09.
20. Derbigny WA, Kerr MS, Johnson RM. 2005. Pattern recognition molecules activated by Chlamydia muridarum infection of cloned murine oviduct epithelial cell lines. J. Immunol. 175: 6065-6075.
21. Benakanakere MR, Li Q, Eskan MA, Singh AV, Zhao J, Galicia JC, Stathopoulou P, Knudsen TB, Kinane DF. 2009. Modulation of TLR2 protein expression by miR-105 in human oral keratinocytes. J. Biol. Chem. 284: 23107-23115. http://dx. doi. org/10. 1074/jbc. M109. 013862.
22. Zhuang G, Meng C, Guo X, Cheruku PS, Shi L, Xu H, Li H, Wang G, Evans AR, Safe S, Wu C, Zhou B. 2012. A novel regulator of macrophage activation: miR-223 in obesity-associated adipose tissue inflammation. Circulation 125: 2892-2903. http://dx. doi. org/10. 1161/CIRCULATIONAHA. 111. 087817.
23. Xu G, Zhang Z, Wei J, Zhang Y, Zhang Y, Guo L, Liu X. 2013. microR-142-3p down-regulates IRAK-1 in response to Mycobacterium bovis BCG infection in macrophages. Tuberculosis (Edinb) 93: 606-611. http://dx. doi. org/10. 1016/j. tube. 2013. 08. 006.
24. Liu G, Friggeri A, Yang Y, Park YJ, Tsuruta Y, Abraham E. 2009. miR-147, a microRNA that is induced upon Toll-like receptor stimulation, regulates murine macrophage inflammatory responses. Proc. Natl. Acad. Sci. U. S. A. 106: 15819-15824. http://dx. doi. org/10. 1073/pnas. 0901216106.
25. O'Neill LA. 2009. Boosting the brain's ability to block inflammation via microRNA-132. Immunity 31: 854-855. http://dx. doi. org/10. 1016/j. immuni. 2009. 11. 004.
26. O'Neill LA, Sheedy FJ, McCoy CE. 2011. MicroRNAs: the fine-tuners of Toll-like receptor signalling. Nat. Rev. Immunol. 11: 163-175. http://dx. doi. org/10. 1038/nri2957.
27. O'Connell CM, Ingalls RR, Andrews CW, Jr, Scurlock AM, Darville T. 2007. Plasmid-deficient Chlamydia muridarum fail to induce immune pathology and protect against oviduct disease. J. Immunol. 179: 4027-4034. http://dx. doi. org/10. 4049/jimmunol. 179. 6. 4027.
28. Sun G, Pal S, Sarcon AK, Kim S, Sugawara E, Nikaido H, Cocco MJ, Peterson EM, de la Maza LM. 2007. Structural and functional analyses of the major outer membrane protein of Chlamydia trachomatis. J. Bacteriol. 189: 6222-6235. http://dx. doi. org/10. 1128/JB. 00552-07.
29. Bavoil P, Ohlin A, Schachter J. 1984. Role of disulfide bonding in outer membrane structure and permeability in Chlamydia trachomatis. Infect. Immun. 44: 479-485.
30. Sturdevant GL, Carlson JH, Whitmire WM, Zhou B, Song L, Caldwell HD. 20 December 2013. Infectivity of urogenital Chlamydia trachomatis plasmid-deficient, CT135-null, and double-deficient strains in female mice. Pathog. Dis. http://dx. doi. org/10. 1111/2049-632X. 12121.
31. Rank RG, Bowlin AK, Tormanen KI, Wang Y, Maurelli AT. 2012. Effect of the inflammatory response upon the in vivo competition between two chlamydial variants in the guinea pig model of inclusion conjunctivitis. Infect. Immun. 80: 612-619. http://dx. doi. org/10. 1128/IAI. 06054-11.
32. Seth-Smith HM, Harris SR, Skilton RJ, Radebe FM, Golparian D, Shipitsyna E, Duy PT, Scott P, Cutcliffe LT, O'Neill C, Parmar S, Pitt R, Baker S, Ison CA, Marsh P, Jalal H, Lewis DA, Unemo M, Clarke IN, Parkhill J, Thomson NR. 2013. Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. Genome Res. 23: 855-866. http://dx. doi. org/10. 1101/gr. 150037. 112.
33. Seth-Smith HM, Harris SR, Scott P, Parmar S, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR. 2013. Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA. Nat. Protoc. 8: 2404-2412. http://dx. doi. org/10. 1038/nprot. 2013. 147.
34. Putman TE, Suchland RJ, Ivanovitch JD, Rockey DD. 2013. Cultureindependent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations. Microbiology 159: 2109-2117. http://dx. doi. org/10. 1099/mic. 0. 070029-0.
35. Rank RG, Whittimore J, Bowlin AK, Wyrick PB. 2011. In vivo ultrastructural analysis of the intimate relationship between polymorphonuclear leukocytes and the chlamydial developmental cycle. Infect. Immun. 79: 3291-3301. http://dx. doi. org/10. 1128/IAI. 00200-11.
36. Derrick T, Roberts Ch, Rajasekhar M, Burr SE, Joof H, Makalo P, Bailey RL, Mabey DC, Burton MJ, Holland MJ. 2013. Conjunctival MicroRNA expression in inflammatory trachomatous scarring. PLoS Negl. Trop. Dis. 7: e2117. http://dx. doi. org/10. 1371/journal. pntd. 0002117.
37. Darville T, O'Neill JM, Andrews CW, Jr, Nagarajan UM, Stahl L, Ojcius DM. 2003. Toll-like receptor-2, but not Toll-like receptor-4, is essential for development of oviduct pathology in chlamydial genital tract infection. J. Immunol. 171: 6187-6197. http://dx. doi. org/10. 4049/jimmunol. 171. 11. 6187.
38. O'Connell RM, Taganov KD, Boldin MP, Cheng G, Baltimore D. 2007. MicroRNA-155 is induced during the macrophage inflammatory response. Proc. Natl. Acad. Sci. U. S. A. 104: 1604-1609. http://dx. doi. org/10. 1073/pnas. 0610731104.
39. Pedersen IM, Cheng G, Wieland S, Volinia S, Croce CM, Chisari FV, David M. 2007. Interferon modulation of cellular microRNAs as an antiviral mechanism. Nature 449: 919-922. http://dx. doi. org/10. 1038/nature06205.
40. Barron AL, White HJ, Rank RG, Soloff BL, Moses EB. 1981. A new animal model for the study of Chlamydia trachomatis genital infections: infection of mice with the agent of mouse pneumonitis. J. Infect. Dis. 143: 63-66. http://dx. doi. org/10. 1093/infdis/143. 1. 63.
41. Read TD, Brunham RC, Shen C, Gill SR, Heidelberg JF, White O, Hickey EK, Peterson J, Utterback T, Berry K, Bass S, Linher K, Weidman J, Khouri H, Craven B, Bowman C, Dodson R, Gwinn M, Nelson W, DeBoy R, Kolonay J, McClarty G, Salzberg SL, Eisen J, Fraser CM. 2000. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 28: 1397-1406. http://dx. doi. org/10. 1093/nar/28. 6. 1397.
42. Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG. 2011. The IGS standard operating procedure for automated prokaryotic annotation. Stand. Genomics Sci. 4: 244-251. http://dx. doi. org/10. 4056/sigs. 1223234.
43. Delcher AL, Phillippy A, Carlton J, Salzberg SL. 2002. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 30: 2478-2483. http://dx. doi. org/10. 1093/nar/30. 11. 2478.
44. Eppinger M, Radnedge L, Andersen G, Vietri N, Severson G, Mou S, Ravel J, Worsham PL. 2012. Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance. PLoS One 7: e32911. http://dx. doi. org/10. 1371/journal. pone. 0032911.
45. Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, Haley BJ, Taviani E, Hine E, Su Q, Tallon LJ, Prosper JB, Furth K, Hoq MM, Li H, Fraser-Liggett CM, Cravioto A, Huq A, Ravel J, Cebula TA, Colwell RR. 2012. Genomic diversity of 2010 Haitian cholera outbreak strains. Proc. Natl. Acad. Sci. U. S. A. 109: E2010-E2017. http://dx. doi. org/10. 1073/pnas. 1207359109.
46. Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10: R25. http://dx. doi. org/10. 1186/gb-2009-10-3-r25.
47. Kozomara A, Griffiths-Jones S. 2014. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42: D68-D73. http://dx. doi. org/10. 1093/nar/gkt1181.
48. Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol. 11: R106. http://dx. doi. org/10. 1186/gb-2010-11-10-r106.
49. Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140. http://dx. doi. org/10. 1093/bioinformatics/btp616.
50. Nahid MA, Yao B, Dominguez-Gutierrez PR, Kesavalu L, Satoh M, Chan EKL. 1 February 2013. Regulation of TLR2-mediated tolerance and cross-tolerance through IRAK4 modulation by miR-132 and miR-212. J. Immunol. 190(3): 1250-1263. http://dx. doi. org/10. 4049/jimmunol. 1103060.