메뉴 건너뛰기




Volumn 9, Issue 7, 2014, Pages

Non-circadian expression masking clock-driven weak transcription rhythms in U2OS Cells

Author keywords

[No Author keywords available]

Indexed keywords

CRYPTOCHROME 1; LUCIFERASE; PROTEIN BMAL1; TRANSCRIPTION FACTOR CLOCK; ARNTL PROTEIN, HUMAN; CLOCK PROTEIN, HUMAN; CRY1 PROTEIN, HUMAN; CRYPTOCHROME; TRANSCRIPTION FACTOR ARNTL;

EID: 84903955035     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0102238     Document Type: Article
Times cited : (19)

References (34)
  • 1
    • 0032510778 scopus 로고    scopus 로고
    • The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors
    • Available
    • Hogenesch JB, Gu Y-Z, Jain S, Bradfield CA (1998) The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors. Proceedings of the National Academy of Sciences of the United States of America 95: 5474-5479. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=20401&tool= pmcentrez&rendertype=abstract.
    • (1998) Proceedings of the National Academy of Sciences of the United States of America , vol.95 , pp. 5474-5479
    • Hogenesch, J.B.1    Gu, Y.-Z.2    Jain, S.3    Bradfield, C.A.4
  • 2
    • 0032486330 scopus 로고    scopus 로고
    • Role of the CLOCK Protein in the Mammalian Circadian Mechanism
    • Available: Accessed 2012 March 9
    • Gekakis N, Staknis D, Nguyen HB, Davis FC, Wilsbacher LD, et al. (1998) Role of the CLOCK Protein in the Mammalian Circadian Mechanism. Science 280: 1564-1569. Available: http://www.sciencemag.org/cgi/doi/10.1126/science.280. 5369.1564. Accessed 2012 March 9.
    • (1998) Science , vol.280 , pp. 1564-1569
    • Gekakis, N.1    Staknis, D.2    Nguyen, H.B.3    Davis, F.C.4    Wilsbacher, L.D.5
  • 3
    • 0033597904 scopus 로고    scopus 로고
    • mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop
    • Available
    • Kume K, Zylka MJ, Sriram S, Shearman LP, Weaver DR, et al. (1999) mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell 98: 193-205. Available: http://www.ncbi.nlm.nih.gov/pubmed/ 10428031.
    • (1999) Cell , vol.98 , pp. 193-205
    • Kume, K.1    Zylka, M.J.2    Sriram, S.3    Shearman, L.P.4    Weaver, D.R.5
  • 4
    • 0032214514 scopus 로고    scopus 로고
    • Mammalian circadian autoregulatory loop: A timeless ortholog and mPer1 interact and negatively regulate CLOCK-BMAL1-induced transcription
    • Available
    • Sangoram AM, Saez L, Antoch MP, Gekakis N, Staknis D, et al. (1998) Mammalian circadian autoregulatory loop: a timeless ortholog and mPer1 interact and negatively regulate CLOCK-BMAL1-induced transcription.Neuron 21: 1101-1113. Available: http://www.ncbi.nlm.nih.gov/pubmed/9856465.
    • (1998) Neuron , vol.21 , pp. 1101-1113
    • Sangoram, A.M.1    Saez, L.2    Antoch, M.P.3    Gekakis, N.4    Staknis, D.5
  • 5
    • 0037178787 scopus 로고    scopus 로고
    • The orphan nuclear receptor REV-ERBa controls circadian transcription within the positive limb of the mammalian circadian oscillator
    • DOI 10.1016/S0092-8674(02)00825-5
    • Preitner N, Damiola F, Zakany J, Duboule D, Albrecht U, et al. (2002) The Orphan Nuclear Receptor REV-ERB a Controls Circadian Transcription within the Positive Limb of the Mammalian Circadian Oscillator. Cell 110: 251-260. (Pubitemid 34876552)
    • (2002) Cell , vol.110 , Issue.2 , pp. 251-260
    • Preitner, N.1    Damiola, F.2    Luis-Lopez-Molina3    Zakany, J.4    Duboule, D.5    Albrecht, U.6    Schibler, U.7
  • 6
    • 4143142003 scopus 로고    scopus 로고
    • A functional genomics strategy reveals Rora as a component of the mammalian circadian clock
    • Available
    • Sato TK, Panda S, Miraglia LJ, Reyes TM, Rudic RD, et al. (2004) A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron 43: 527-537. Available: http://www.ncbi.nlm.nih.gov/ pubmed/15312651.
    • (2004) Neuron , vol.43 , pp. 527-537
    • Sato, T.K.1    Panda, S.2    Miraglia, L.J.3    Reyes, T.M.4    Rudic, R.D.5
  • 7
    • 40149090376 scopus 로고    scopus 로고
    • Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms
    • Available: Accessed 2010 July 18
    • Liu AC, Tran HG, Zhang EE, Priest AA, Welsh DK, et al. (2008) Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms. PLoS Genetics 4: e1000023. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid= 2265523&tool=pmcentrez&rendertype=abstract. Accessed 2010 July 18.
    • (2008) PLoS Genetics , vol.4
    • Liu, A.C.1    Tran, H.G.2    Zhang, E.E.3    Priest, A.A.4    Welsh, D.K.5
  • 8
    • 78149245166 scopus 로고    scopus 로고
    • Characterization of the core mammalian clock component, NPAS2, as a REV-ERBalpha/RORalpha target gene
    • Available: Accessed 2011 July 7
    • Crumbley C, Wang Y, Kojetin DJ, Burris TP (2010) Characterization of the core mammalian clock component, NPAS2, as a REV-ERBalpha/RORalpha target gene. The Journal of Biological Chemistry 285: 35386-35392. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2975162&tool= pmcentrez&rendertype=abstract. Accessed 2011 July 7.
    • (2010) The Journal of Biological Chemistry , vol.285 , pp. 35386-35392
    • Crumbley, C.1    Wang, Y.2    Kojetin, D.J.3    Burris, T.P.4
  • 9
    • 78651491409 scopus 로고    scopus 로고
    • Delay in feedback repression by cryptochrome 1 is required for circadian clock function
    • Available: Accessed 2012 August 2
    • Ukai-Tadenuma M, Yamada RG, Xu H, Ripperger JA, Liu AC, et al. (2011) Delay in feedback repression by cryptochrome 1 is required for circadian clock function. Cell 144: 266-281. Available: http://www.sciencedirect.com/science/ article/pii/S0092867410014376. Accessed 2012 August 2.
    • (2011) Cell , vol.144 , pp. 266-281
    • Ukai-Tadenuma, M.1    Yamada, R.G.2    Xu, H.3    Ripperger, J.A.4    Liu, A.C.5
  • 10
    • 24944460267 scopus 로고    scopus 로고
    • Differential control of Bmal1 circadian transcription by REV-ERB and ROR nuclear receptors
    • Available: Accessed 2012 August 8
    • Guillaumond F, Dardente H, Giguère V, Cermakian N (2005) Differential control of Bmal1 circadian transcription by REV-ERB and ROR nuclear receptors. Journal of Biological Rhythms 20: 391-403. Available: http://www.ncbi.nlm.nih.gov/pubmed/16267379. Accessed 2012 August 8.
    • (2005) Journal of Biological Rhythms , vol.20 , pp. 391-403
    • Guillaumond, F.1    Dardente, H.2    Giguère, V.3    Cermakian, N.4
  • 11
    • 0035829369 scopus 로고    scopus 로고
    • Identifying the photoreceptive inputs to the mammalian circadian system using transgenic and retinally degenerate mice
    • Available
    • Lucas RJ, Freedman MS, Lupi D, Munoz M, David-Gray ZK, et al. (2001) Identifying the photoreceptive inputs to the mammalian circadian system using transgenic and retinally degenerate mice. Behavioural Brain Research 125: 97-102. Available: http://www.ncbi.nlm.nih.gov/pubmed/11682100.
    • (2001) Behavioural Brain Research , vol.125 , pp. 97-102
    • Lucas, R.J.1    Freedman, M.S.2    Lupi, D.3    Munoz, M.4    David-Gray, Z.K.5
  • 12
    • 0028904194 scopus 로고
    • Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms
    • Available
    • Welsh DK, Logothetis DE, Meister M, Reppert SM (1995) Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms. Neuron 14: 697-706. Available: http://www.ncbi.nlm. nih.gov/pubmed/7718233.
    • (1995) Neuron , vol.14 , pp. 697-706
    • Welsh, D.K.1    Logothetis, D.E.2    Meister, M.3    Reppert, S.M.4
  • 13
    • 0034724728 scopus 로고    scopus 로고
    • Resetting Central and Peripheral Circadian Oscillators in Transgenic Rats
    • Available: Accessed 2010 July 18
    • Yamazaki S (2000) Resetting Central and Peripheral Circadian Oscillators in Transgenic Rats. Science 288: 682-685. Available: http://www.sciencemag.org/ cgi/doi/10.1126/science.288.5466.682. Accessed 2010 July 18.
    • (2000) Science , vol.288 , pp. 682-685
    • Yamazaki, S.1
  • 14
    • 0032511229 scopus 로고    scopus 로고
    • A serum shock induces circadian gene expression in mammalian tissue culture cells
    • Available
    • Balsalobre A, Damiola F, Schibler U (1998) A serum shock induces circadian gene expression in mammalian tissue culture cells. Cell 93: 929-937. Available: http://www.ncbi.nlm.nih.gov/pubmed/9635423.
    • (1998) Cell , vol.93 , pp. 929-937
    • Balsalobre, A.1    Damiola, F.2    Schibler, U.3
  • 15
    • 11144353910 scopus 로고    scopus 로고
    • PERIOD2:LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues
    • Available
    • Yoo S-H, Yamazaki S, Lowrey PL, Shimomura K, Ko CH, et al. (2004) PERIOD2:LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues. Proceedings of the National Academy of Sciences of the United States of America 101: 5339-5346. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=397382&tool= pmcentrez&rendertype=abstract.
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , pp. 5339-5346
    • Yoo, S.-H.1    Yamazaki, S.2    Lowrey, P.L.3    Shimomura, K.4    Ko, C.H.5
  • 16
    • 33750706567 scopus 로고    scopus 로고
    • Properties, entrainment, and physiological functions of mammalian peripheral oscillators
    • Available: Accessed 2012 July 13
    • Stratmann M, Schibler U (2006) Properties, entrainment, and physiological functions of mammalian peripheral oscillators. Journal of Biological Rhythms 21: 494-506. Available: http://www.ncbi.nlm.nih.gov/pubmed/17107939. Accessed 2012 July 13.
    • (2006) Journal of Biological Rhythms , vol.21 , pp. 494-506
    • Stratmann, M.1    Schibler, U.2
  • 17
    • 0033637383 scopus 로고    scopus 로고
    • Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus
    • Available: Accessed 2012 July 22
    • Damiola F (2000) Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus. Genes & Development 14: 2950-2961. Available: http://www.genesdev.org/cgi/ doi/10.1101/gad.183500. Accessed 2012 July 22.
    • (2000) Genes & Development , vol.14 , pp. 2950-2961
    • Damiola, F.1
  • 18
    • 18444414586 scopus 로고    scopus 로고
    • Coordinated transcription of key pathways in the mouse by the circadian clock
    • Available
    • Panda S, Antoch MP, Miller BH, Su AI, Schook AB, et al. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109: 307-320. Available: http://www.ncbi.nlm.nih.gov/pubmed/12015981.
    • (2002) Cell , vol.109 , pp. 307-320
    • Panda, S.1    Antoch, M.P.2    Miller, B.H.3    Su, A.I.4    Schook, A.B.5
  • 19
    • 84867667011 scopus 로고    scopus 로고
    • Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals
    • Available
    • Koike N, Yoo S-H, Huang H-C, Kumar V, Lee C, et al. (2012) Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals. Science 338: 349-354. Available: http://www.ncbi.nlm.nih.gov/ pubmed/22936566.
    • (2012) Science , vol.338 , pp. 349-354
    • Koike, N.1    Yoo, S.-H.2    Huang, H.-C.3    Kumar, V.4    Lee, C.5
  • 20
    • 84871581540 scopus 로고    scopus 로고
    • Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression
    • Available: Accessed 2012 December 18
    • Kojima S, Sher-Chen EL, Green CB (2012) Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression. Genes & Development 26: 2724-2736. Available: http://genesdev.cshlp.org/cgi/doi/10.1101/ gad.208306.112. Accessed 2012 December 18.
    • (2012) Genes & Development , vol.26 , pp. 2724-2736
    • Kojima, S.1    Sher-Chen, E.L.2    Green, C.B.3
  • 21
    • 84867670963 scopus 로고    scopus 로고
    • Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally
    • Available: Accessed 2012 October 26
    • Morf J, Rey G, Schneider K, Stratmann M, Fujita J, et al. (2012) Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally. Science 338: 379-383. Available: http://www.ncbi.nlm.nih. gov/pubmed/22923437. Accessed 2012 October 26.
    • (2012) Science , vol.338 , pp. 379-383
    • Morf, J.1    Rey, G.2    Schneider, K.3    Stratmann, M.4    Fujita, J.5
  • 22
    • 66349107101 scopus 로고    scopus 로고
    • Harmonics of circadian gene transcription in mammals
    • Available
    • Hughes ME, DiTacchio L, Hayes KR, Vollmers C, Pulivarthy S, et al. (2009) Harmonics of circadian gene transcription in mammals. PLoS Genetics 5: e1000442. Available: http://www.ncbi.nlm.nih.gov/pubmed/19343201.
    • (2009) PLoS Genetics , vol.5
    • Hughes, M.E.1    DiTacchio, L.2    Hayes, K.R.3    Vollmers, C.4    Pulivarthy, S.5
  • 23
    • 79952261359 scopus 로고    scopus 로고
    • Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver
    • Available: Accessed 2011 February 25
    • Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, et al. (2011) Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver. PLoS Biology 9: e1000595. Available: http://dx.plos.org/10.1371/journal.pbio.1000595. Accessed 2011 February 25.
    • (2011) PLoS Biology , vol.9
    • Rey, G.1    Cesbron, F.2    Rougemont, J.3    Reinke, H.4    Brunner, M.5
  • 24
    • 84870553909 scopus 로고    scopus 로고
    • Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome
    • Available: Accessed 2012 December 5
    • Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, et al. (2012) Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome. Cell Metabolism 16: 833-845. Available: http://linkinghub.elsevier.com/retrieve/pii/S1550413112004573. Accessed 2012 December 5.
    • (2012) Cell Metabolism , vol.16 , pp. 833-845
    • Vollmers, C.1    Schmitz, R.J.2    Nathanson, J.3    Yeo, G.4    Ecker, J.R.5
  • 25
    • 84870288931 scopus 로고    scopus 로고
    • Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles
    • Available: Accessed 2012 November 28
    • Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, et al. (2012) Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles. PLoS Biology 10: e1001442. Available: http://dx.plos.org/10.1371/ journal.pbio.1001442. Accessed 2012 November 28.
    • (2012) PLoS Biology , vol.10
    • Le Martelot, G.1    Canella, D.2    Symul, L.3    Migliavacca, E.4    Gilardi, F.5
  • 26
    • 55149112074 scopus 로고    scopus 로고
    • A high-throughput assay for siRNAbased circadian screens in human U2OS cells
    • Available: Accessed 2010 August 6
    • Vollmers C, Panda S, DiTacchio L (2008) A high-throughput assay for siRNAbased circadian screens in human U2OS cells. PloS ONE 3: e3457. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2565498&tool= pmcentrez&rendertype=abstract. Accessed 2010 August 6.
    • (2008) PloS ONE , vol.3
    • Vollmers, C.1    Panda, S.2    DiTacchio, L.3
  • 27
    • 63049126277 scopus 로고    scopus 로고
    • A largescale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock
    • Available: Accessed 2010 August 16
    • Maier B, Wendt S, Vanselow JT, Wallach T, Reischl S, et al. (2009) A largescale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock. Genes & Development 23: 708-718. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2661607&tool= pmcentrez&rendertype=abstract. Accessed 2010 August 16.
    • (2009) Genes & Development , vol.23 , pp. 708-718
    • Maier, B.1    Wendt, S.2    Vanselow, J.T.3    Wallach, T.4    Reischl, S.5
  • 28
    • 84255206549 scopus 로고    scopus 로고
    • Cryptochromes mediate rhythmic repression of the glucocorticoid receptor
    • Available: Accessed 2012 July 20
    • Lamia KA, Papp SJ, Yu RT, Barish GD, Uhlenhaut NH, et al. (2011) Cryptochromes mediate rhythmic repression of the glucocorticoid receptor. Nature 480: 552-556. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi? artid=3245818&tool=pmcentrez&rendertype=abstract. Accessed 2012 July 20.
    • (2011) Nature , vol.480 , pp. 552-556
    • Lamia, K.A.1    Papp, S.J.2    Yu, R.T.3    Barish, G.D.4    Uhlenhaut, N.H.5
  • 29
    • 14844363721 scopus 로고    scopus 로고
    • Signaling by target of rapamycin proteins in cell growth control
    • DOI 10.1128/MMBR.69.1.79-100.2005
    • Inoki K, Ouyang H, Li Y, Guan K (2005) Signaling by Target of Rapamycin Proteins in Cell Growth Control. Microbiology and Molecular Biology Reviews 69: 79-100. doi:10.1128/MMBR.69.1.79. (Pubitemid 40358068)
    • (2005) Microbiology and Molecular Biology Reviews , vol.69 , Issue.1 , pp. 79-100
    • Inoki, K.1    Ouyang, H.2    Li, Y.3    Guan, K.-L.4
  • 30
    • 84881506759 scopus 로고    scopus 로고
    • Nascent-Seq reveals novel features of mouse circadian transcriptional regulation
    • Available: Accessed 2012 November 13
    • Menet JS, Rodriguez J, Abruzzi KC, Rosbash M (2012) Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. eLife 1: 1-25. Available: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492862. Accessed 2012 November 13.
    • (2012) eLife , vol.1 , pp. 1-25
    • Menet, J.S.1    Rodriguez, J.2    Abruzzi, K.C.3    Rosbash, M.4
  • 31
    • 34047245459 scopus 로고    scopus 로고
    • Glucocorticoid signaling synchronizes the liver circadian transcriptome
    • Available: Accessed 2010 July 18
    • Reddy AB, Maywood ES, Karp NA, King VM, Inoue Y, et al. (2007) Glucocorticoid signaling synchronizes the liver circadian transcriptome. Hepatology 45: 1478-1488. Available: http://www.ncbi.nlm.nih.gov/pubmed/ 17538967. Accessed 2010 July 18.
    • (2007) Hepatology , vol.45 , pp. 1478-1488
    • Reddy, A.B.1    Maywood, E.S.2    Karp, N.A.3    King, V.M.4    Inoue, Y.5
  • 32
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Available: Accessed 2012 July 30
    • Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biology 9: R137. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2592715&tool= pmcentrez&rendertype=abstract. Accessed 2012 July 30.
    • (2008) Genome Biology , vol.9
    • Zhang, Y.1    Liu, T.2    Meyer, C.A.3    Eeckhoute, J.4    Johnson, D.S.5
  • 33
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Available: Accessed 2012 July 17
    • Quinlan AR, Hall IM (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2832824&tool= pmcentrez&rendertype=abstract. Accessed 2012 July 17.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 34
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini Y, Hochberg Y (1995) Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society 57: 289-300.
    • (1995) Journal of the Royal Statistical Society , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.