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Volumn 2014, Issue 1, 2014, Pages

BALSA: Integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU

Author keywords

Genomics; GPU; HPC; NGS; Secondary analysis; Variant calling; Whole exome sequencing; Whole genome seqeuncing

Indexed keywords

ARTICLE; COMPUTER MEMORY; COMPUTER PROGRAM; EXOME; GENE FREQUENCY; GENOTYPE; LEUKEMIA; LUNG ADENOCARCINOMA; MEASUREMENT ACCURACY; PROBABILITY; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; SOMATIC MUTATION;

EID: 84903843725     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.421     Document Type: Article
Times cited : (16)

References (20)
  • 4
    • 84872835269 scopus 로고    scopus 로고
    • Haplotype-based variant detection from short-read sequencing
    • ArXiv preprint. arXiv:1207.3907
    • Garrison E, Marth G. 2012. Haplotype-based variant detection from short-read sequencing. ArXiv preprint. arXiv:1207.3907.
    • (2012)
    • Garrison, E.1    Marth, G.2
  • 5
    • 84903845835 scopus 로고    scopus 로고
    • GPU accelerated signal processing in the ion proton whole genome sequencer
    • Available at, accessed 31 March 2014
    • Gupta M, Siegel J. 2013. GPU accelerated signal processing in the ion proton whole genome sequencer. Available at http://on-demand.gputechconf.com/gtc/2013/presentations/S3229-Signal-Processing-Whole-Genome-quencer.pdf (accessed 31 March 2014).
    • (2013)
    • Gupta, M.1    Siegel, J.2
  • 6
    • 84903840805 scopus 로고    scopus 로고
    • Whole genome sequencing on donor cell leukemia in a patient with multiple myeloma identified gene mutations that may provide insights to leukemogenesis [Abstract 2414]
    • In, Atlanta, GA, Available at
    • Ho ESK, Chow HCH, Chan CTL, Luo R, Leung HCM, SiuMing Yiu, Chin FYL, Kwong YL, Leung AYH. 2012.Whole genome sequencing on donor cell leukemia in a patient with multiple myeloma identified gene mutations that may provide insights to leukemogenesis [Abstract 2414]. In: 54th ASH annual meeting and exposition. Atlanta, GA, Available at https://ash.confex. com/ash/2012/webprogram/Paper52519.html.
    • (2012) 54th ASH annual meeting and exposition
    • Ho, E.S.K.1    Chow, H.C.H.2    Chan, C.T.L.3    Luo, R.4    Leung, H.C.M.5    Yiu, S.M.6    Chin, F.Y.L.7    Kwong, Y.L.8    Leung, A.Y.H.9
  • 8
    • 84903838095 scopus 로고    scopus 로고
    • Illumina, Bcl2FastQ Available at, accessed 31 March
    • Illumina. Bcl2FastQ. Available at https://support.illumina.com/downloads/bcl2fastq conversion software 184.ilmn (accessed 31 March 2014).
    • (2014)
  • 9
    • 84903840164 scopus 로고    scopus 로고
    • PCR-free pedigree@50x
    • Illumina, Available at, accessed 31 March 2014
    • Illumina. 2012. PCR-free pedigree@50x. Available at http://www.illumina.com/platinumgenomes/(accessed 31 March 2014).
    • (2012)
  • 10
    • 84903823725 scopus 로고    scopus 로고
    • Illumina, GVCFTools Available at, accessed 31 March 2014
    • Illumina. 2013. gVCFTools. Available at http://sites.google.com/site/gvcftools/(accessed 31 March 2014).
    • (2013)
  • 13
    • 84890081976 scopus 로고    scopus 로고
    • Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
    • ArXiv preprint. arXiv:1303.3997
    • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. ArXiv preprint. arXiv:1303.3997.
    • (2013)
    • Li, H.1
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • DOI 10.1093/bioinformatics/btp324
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. DOI 10.1093/bioinformatics/btp324
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • The Cancer Genome Atlas Research Network, DOI 10.1038/nature11404
    • The Cancer Genome Atlas Research Network. 2012. Comprehensive genomic characterization of squamous cell lung cancers. Nature 489:519-525. DOI 10.1038/nature11404
    • (2012) Nature , vol.489 , pp. 519-525


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.