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Volumn 16, Issue 7, 2014, Pages 2226-2237

Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen Xanthomonas citri pv. citri in its area of origin

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); CITRUS; GAMMAPROTEOBACTERIA; XANTHOMONAS CITRI;

EID: 84903765910     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12369     Document Type: Article
Times cited : (26)

References (49)
  • 1
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
    • Achtman, M. (2008) Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol 62: 53-70.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 53-70
    • Achtman, M.1
  • 2
    • 84856652357 scopus 로고    scopus 로고
    • Insights from genomic comparisons of genetically monomorphic bacterial pathogens
    • Achtman, M. (2012) Insights from genomic comparisons of genetically monomorphic bacterial pathogens. Philos T R Soc B 367: 860-867.
    • (2012) Philos T R Soc B , vol.367 , pp. 860-867
    • Achtman, M.1
  • 3
    • 0000847921 scopus 로고    scopus 로고
    • Indices of multilocus linkage disequilibrium
    • Agapow, P.M., and Burt, A. (2001) Indices of multilocus linkage disequilibrium. Mol Ecol Notes 1: 101-102.
    • (2001) Mol Ecol Notes , vol.1 , pp. 101-102
    • Agapow, P.M.1    Burt, A.2
  • 4
    • 77749330016 scopus 로고    scopus 로고
    • PAMDB, A multilocus sequence typing and analysis database and website for plant-associated microbes
    • Almeida, N.F., Yan, S., Cai, R., Clarke, C.R., Morris, C.E., Schaad, N.W., etal. (2010) PAMDB, A multilocus sequence typing and analysis database and website for plant-associated microbes. Phytopathology 100: 208-215.
    • (2010) Phytopathology , vol.100 , pp. 208-215
    • Almeida, N.F.1    Yan, S.2    Cai, R.3    Clarke, C.R.4    Morris, C.E.5    Schaad, N.W.6
  • 6
    • 4544348578 scopus 로고    scopus 로고
    • Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers
    • Anderson, P.K., Cunningham, A.A., Patel, N.G., Morales, F.J., Epstein, P.R., and Daszak, P. (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends Ecol Evol 19: 535-544.
    • (2004) Trends Ecol Evol , vol.19 , pp. 535-544
    • Anderson, P.K.1    Cunningham, A.A.2    Patel, N.G.3    Morales, F.J.4    Epstein, P.R.5    Daszak, P.6
  • 7
    • 0036007847 scopus 로고    scopus 로고
    • The estimation of population differentiation with microsatellite markers
    • Balloux, F., and Lugon-Moulin, N. (2002) The estimation of population differentiation with microsatellite markers. Mol Ecol 11: 155-165.
    • (2002) Mol Ecol , vol.11 , pp. 155-165
    • Balloux, F.1    Lugon-Moulin, N.2
  • 8
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Royal Stat Soc B 57: 289-300.
    • (1995) J Royal Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 9
    • 67650087715 scopus 로고    scopus 로고
    • Pathotype identification of Xanthomonas citri pv. citri strains causing citrus canker in Vietnam
    • Bui Thi Ngoc, L., Vernière, C., Boyer, C., Vital, K., Pruvost, O., Le Mai, N., and Le Thi Thu, H. (2009a) Pathotype identification of Xanthomonas citri pv. citri strains causing citrus canker in Vietnam. Plant Dis 93: 671.
    • (2009) Plant Dis , vol.93 , pp. 671
    • Bui Thi Ngoc, L.1    Vernière, C.2    Boyer, C.3    Vital, K.4    Pruvost, O.5    Le Mai, N.6    Le Thi Thu, H.7
  • 10
    • 59949095451 scopus 로고    scopus 로고
    • From local surveys to global surveillance: three high throughput genotyping methods for the epidemiological monitoring of Xanthomonas citri pv. citri pathotypes
    • Bui Thi Ngoc, L., Vernière, C., Jarne, P., Brisse, S., Guérin, F., Boutry, S., etal. (2009b) From local surveys to global surveillance: three high throughput genotyping methods for the epidemiological monitoring of Xanthomonas citri pv. citri pathotypes. Appl Environ Microbiol 75: 1173-1184.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1173-1184
    • Bui Thi Ngoc, L.1    Vernière, C.2    Jarne, P.3    Brisse, S.4    Guérin, F.5    Boutry, S.6
  • 11
    • 77949375230 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae
    • Bui Thi Ngoc, L., Vernière, C., Jouen, E., Ah-You, N., Lefeuvre, P., Chiroleu, F., etal. (2010) Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae. Int J Syst Evol Microbiol 60: 515-525.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 515-525
    • Bui Thi Ngoc, L.1    Vernière, C.2    Jouen, E.3    Ah-You, N.4    Lefeuvre, P.5    Chiroleu, F.6
  • 12
    • 0008591201 scopus 로고
    • Temporal analysis of epidemics. I: Description and comparison of disease progress curves
    • New York, NY, USA: John Wiley & Sons
    • Campbell, C.L., and Madden, L.V. (1990) Temporal analysis of epidemics. I: Description and comparison of disease progress curves. In Introduction to Plant Disease Epidemiology. New York, NY, USA: John Wiley & Sons, pp. 161-202.
    • (1990) Introduction to Plant Disease Epidemiology , pp. 161-202
    • Campbell, C.L.1    Madden, L.V.2
  • 13
    • 0001220811 scopus 로고
    • Bacterial canker disease of citrus
    • Civerolo, E.L. (1984) Bacterial canker disease of citrus. J Rio Grande Val Hort Soc 37: 127-145.
    • (1984) J Rio Grande Val Hort Soc , vol.37 , pp. 127-145
    • Civerolo, E.L.1
  • 15
    • 84880492234 scopus 로고    scopus 로고
    • Bacterial genomes in epidemiology - present and future
    • Croucher, N.J., Harris, S.R., Grad, Y.H., and Hanage, W.P. (2013) Bacterial genomes in epidemiology - present and future. Philos T R Soc B 368: 20120202. http://dx.doi.org/10.1098/rstb.2012.0202.
    • (2013) Philos T R Soc B , vol.368 , pp. 20120202
    • Croucher, N.J.1    Harris, S.R.2    Grad, Y.H.3    Hanage, W.P.4
  • 16
    • 0036197003 scopus 로고    scopus 로고
    • Genetic relationship among worldwide strains of Xanthomonas causing canker in citrus species and design of new primers for their identification by PCR
    • Cubero, J., and Graham, J.H. (2002) Genetic relationship among worldwide strains of Xanthomonas causing canker in citrus species and design of new primers for their identification by PCR. Appl Environ Microbiol 68: 1257-1264.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1257-1264
    • Cubero, J.1    Graham, J.H.2
  • 17
    • 0037161811 scopus 로고    scopus 로고
    • Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    • Da Silva, A.C., Ferro, J.A., Reinach, F.C., Farah, C.S., Furlan, L.R., Quaggio, R.B., etal. (2002) Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 417: 459-463.
    • (2002) Nature , vol.417 , pp. 459-463
    • Da Silva, A.C.1    Ferro, J.A.2    Reinach, F.C.3    Farah, C.S.4    Furlan, L.R.5    Quaggio, R.B.6
  • 20
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): an integrated software package for population genetics data analysis
    • Excoffier, L., Laval, G., and Schneider, S. (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinf 1: 47-50.
    • (2005) Evol Bioinf , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 22
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil, E.J., and Spratt, B.G. (2001) Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol 55: 561-590.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 23
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil, E.J., Li, B.C., Aanensen, D.M., Hanage, W.P., and Spratt, B.G. (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
    • (2004) J Bacteriol , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 24
    • 0030902701 scopus 로고    scopus 로고
    • Movement of Xanthomonas oryzae pv. oryzae in southeast Asia detected using PCR-based DNA fingerprinting
    • George, M.L.C., Bustamam, M., Cruz, W.T., Leach, J.E., and Nelson, R.J. (1997) Movement of Xanthomonas oryzae pv. oryzae in southeast Asia detected using PCR-based DNA fingerprinting. Phytopathology 87: 302-309.
    • (1997) Phytopathology , vol.87 , pp. 302-309
    • George, M.L.C.1    Bustamam, M.2    Cruz, W.T.3    Leach, J.E.4    Nelson, R.J.5
  • 25
    • 37849039337 scopus 로고    scopus 로고
    • Post-hurricane analysis of citrus canker II: predictive model estimation of disease spread and area potentially impacted by various eradication protocols following catastrophic weather events
    • doi:10.1094/PHP-2007-0405-01-RS.
    • Gottwald, T.R., and Irey, M. (2007) Post-hurricane analysis of citrus canker II: predictive model estimation of disease spread and area potentially impacted by various eradication protocols following catastrophic weather events. Plant Health Prog. doi:10.1094/PHP-2007-0405-01-RS.
    • (2007) Plant Health Prog
    • Gottwald, T.R.1    Irey, M.2
  • 26
    • 0242684693 scopus 로고    scopus 로고
    • Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation
    • Hardy, O.J., Charbonnel, N., Fréville, H., and Heuertz, M. (2003) Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics 163: 1467-1482.
    • (2003) Genetics , vol.163 , pp. 1467-1482
    • Hardy, O.J.1    Charbonnel, N.2    Fréville, H.3    Heuertz, M.4
  • 27
    • 84863136263 scopus 로고    scopus 로고
    • Anthropogenically induced adaptation to invade (AIAI): contemporary adaptation to human-altered habitats within the native range can promote invasions
    • Hufbauer, R.A., Facon, B., Ravigné, V., Turgeon, J., Foucaud, J., Lee, C.E., etal. (2012) Anthropogenically induced adaptation to invade (AIAI): contemporary adaptation to human-altered habitats within the native range can promote invasions. Evol Appl 5: 89-101.
    • (2012) Evol Appl , vol.5 , pp. 89-101
    • Hufbauer, R.A.1    Facon, B.2    Ravigné, V.3    Turgeon, J.4    Foucaud, J.5    Lee, C.E.6
  • 28
    • 58249119572 scopus 로고    scopus 로고
    • Trade, transport and trouble: managing invasive species pathways in an era of globalization
    • Hulme, P.E. (2009) Trade, transport and trouble: managing invasive species pathways in an era of globalization. J Appl Ecol 46: 10-18.
    • (2009) J Appl Ecol , vol.46 , pp. 10-18
    • Hulme, P.E.1
  • 29
    • 77957919360 scopus 로고    scopus 로고
    • Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
    • Jombart, T., Devillard, S., and Balloux, F. (2010) Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet 11: 94.
    • (2010) BMC Genet , vol.11 , pp. 94
    • Jombart, T.1    Devillard, S.2    Balloux, F.3
  • 30
    • 14844358868 scopus 로고    scopus 로고
    • HP-RARE 1.0: a computer program for performing rarefaction on measures of allelic richness
    • Kalinowski, S.T. (2005) HP-RARE 1.0: a computer program for performing rarefaction on measures of allelic richness. Mol Ecol Notes 5: 187-189.
    • (2005) Mol Ecol Notes , vol.5 , pp. 187-189
    • Kalinowski, S.T.1
  • 31
  • 32
    • 22244459534 scopus 로고    scopus 로고
    • Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria
    • Lindstedt, B.A. (2005) Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26: 2567-2582.
    • (2005) Electrophoresis , vol.26 , pp. 2567-2582
    • Lindstedt, B.A.1
  • 33
    • 0036277178 scopus 로고    scopus 로고
    • The population genetics of plant pathogens and breeding strategies for durable resistance
    • McDonald, B.A., and Linde, C. (2002) The population genetics of plant pathogens and breeding strategies for durable resistance. Euphytica 124: 163-180.
    • (2002) Euphytica , vol.124 , pp. 163-180
    • McDonald, B.A.1    Linde, C.2
  • 35
    • 77956752145 scopus 로고    scopus 로고
    • Contributions of population genetics to plant disease epidemiology and management
    • Milgroom, M.G., and Fry, W.E. (1997) Contributions of population genetics to plant disease epidemiology and management. Adv Microb Ecol 24: 1-30.
    • (1997) Adv Microb Ecol , vol.24 , pp. 1-30
    • Milgroom, M.G.1    Fry, W.E.2
  • 36
    • 0015891902 scopus 로고
    • Linkage disequilibrium in subdivided populations
    • Nei, M., and Li, W.H. (1973) Linkage disequilibrium in subdivided populations. Genetics 75: 213-219.
    • (1973) Genetics , vol.75 , pp. 213-219
    • Nei, M.1    Li, W.H.2
  • 37
    • 84988823624 scopus 로고    scopus 로고
    • Citrus
    • Badenes, M.L., and Byrne, D.H. (eds). New York, NY, USA: Springer
    • Ollitrault, P., and Navarro, L. (2012) Citrus. In Fruit Breeding. Badenes, M.L., and Byrne, D.H. (eds). New York, NY, USA: Springer, pp. 623-662.
    • (2012) Fruit Breeding , pp. 623-662
    • Ollitrault, P.1    Navarro, L.2
  • 38
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research
    • Peakall, R., and Smouse, P.E. (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
    • (2006) Mol Ecol Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 39
    • 32644470181 scopus 로고
    • Effect of weather on the world distribution and prevalence of citrus canker and citrus scab
    • Peltier, G.L., and Frederich, W.J. (1926) Effect of weather on the world distribution and prevalence of citrus canker and citrus scab. J Agric Res 32: 147-164.
    • (1926) J Agric Res , vol.32 , pp. 147-164
    • Peltier, G.L.1    Frederich, W.J.2
  • 40
    • 0031914610 scopus 로고    scopus 로고
    • Phenotypic diversity of Xanthomonas sp. mangiferaeindicae
    • Pruvost, O., Couteau, A., Perrier, X., and Luisetti, J. (1998) Phenotypic diversity of Xanthomonas sp. mangiferaeindicae. J Appl Microbiol 84: 15-24.
    • (1998) J Appl Microbiol , vol.84 , pp. 15-24
    • Pruvost, O.1    Couteau, A.2    Perrier, X.3    Luisetti, J.4
  • 41
    • 84857634360 scopus 로고    scopus 로고
    • Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis
    • Robert, S., Ravigné, V., Zapater, M.F., Abadie, C., and Carlier, J. (2012) Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis. Mol Ecol 21: 1098-1114.
    • (2012) Mol Ecol , vol.21 , pp. 1098-1114
    • Robert, S.1    Ravigné, V.2    Zapater, M.F.3    Abadie, C.4    Carlier, J.5
  • 42
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F statistics under isolation by distance
    • Rousset, F. (1997) Genetic differentiation and estimation of gene flow from F statistics under isolation by distance. Genetics 145: 1219-1228.
    • (1997) Genetics , vol.145 , pp. 1219-1228
    • Rousset, F.1
  • 43
    • 84862776903 scopus 로고    scopus 로고
    • Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually
    • Saleh, D., Xu, P., Shen, Y., Li, C., Adreit, H., Milazzo, J., etal. (2012) Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually. Mol Ecol 21: 1330-1344.
    • (2012) Mol Ecol , vol.21 , pp. 1330-1344
    • Saleh, D.1    Xu, P.2    Shen, Y.3    Li, C.4    Adreit, H.5    Milazzo, J.6
  • 44
    • 51849086869 scopus 로고    scopus 로고
    • The origins of plant pathogens in agro-ecosystems
    • Stuckenbrock, E.H., and McDonald, B.A. (2008) The origins of plant pathogens in agro-ecosystems. Annu Rev Phytopathol 46: 75-100.
    • (2008) Annu Rev Phytopathol , vol.46 , pp. 75-100
    • Stuckenbrock, E.H.1    McDonald, B.A.2
  • 45
    • 27844555472 scopus 로고    scopus 로고
    • Bridging the gap between molecular epidemiologists and evolutionists
    • Tibayrenc, M. (2005) Bridging the gap between molecular epidemiologists and evolutionists. Trends Microbiol 13: 575-580.
    • (2005) Trends Microbiol , vol.13 , pp. 575-580
    • Tibayrenc, M.1
  • 46
    • 84870362142 scopus 로고    scopus 로고
    • Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa
    • Tibayrenc, M., and Ayala, F.J. (2012) Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proc Natl Acad Sci U S A 109: E3305-E3313.
    • (2012) Proc Natl Acad Sci U S A , vol.109
    • Tibayrenc, M.1    Ayala, F.J.2
  • 48
    • 0036007449 scopus 로고    scopus 로고
    • Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size
    • Vekemans, X., Beauwens, T., Lemaire, M., and Roldan-Ruiz, I. (2002) Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Mol Ecol 11: 139-151.
    • (2002) Mol Ecol , vol.11 , pp. 139-151
    • Vekemans, X.1    Beauwens, T.2    Lemaire, M.3    Roldan-Ruiz, I.4
  • 49
    • 84860536276 scopus 로고    scopus 로고
    • Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach
    • Xhaard, C., Barrès, B., Andrieux, A., Bousset, L., Halkett, F., and Frey, P. (2012) Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach. Mol Ecol 21: 2383-2398.
    • (2012) Mol Ecol , vol.21 , pp. 2383-2398
    • Xhaard, C.1    Barrès, B.2    Andrieux, A.3    Bousset, L.4    Halkett, F.5    Frey, P.6


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