Nanotechnologies in glycoproteomics

Clinical Proteomics

Volumn 11, Issue 1, 2014, Pages

  Zhao, Hu ^a   Li, Yaojun ^a   Hu, Ye ^a,b  

^a HOUSTON METHODIST RESEARCH INSTITUTE   (United States)

^b WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

3 AMINOPROPYLTRIETHOXYSILANE; AMINOPHENYL BORONIC ACID FUNCTIONALIZED MAGNETIC NANOPARTICLE; CARBON NANOTUBE; GLYCOPROTEIN; GOLD NANOPARTICLE; GRAPHENE; MAGNETIC NANOPARTICLE; NANOMATERIAL; NANOPARTICLE; NANOSHEET; POLYSACCHARIDE; SILICON NANOPARTICLE; UNCLASSIFIED DRUG;

DEGLYCOSYLATION; HUMAN; MASS SPECTROMETRY; MESOPOROUS MATERIAL; NANOTECHNOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN GLYCOSYLATION; PROTEOMICS; REVIEW;

EID: 84903756544     PISSN: 15426416     EISSN: 15590275     Source Type: Journal    
DOI: 10.1186/1559-0275-11-21     Document Type: Review

References (47)

1. Tian Y, Zhang H: Glycoproteomics and clinical applications. Proteomics Clin Appl 2010, 4(2):124-132. doi: 10.1002/prca.200900161.
2. Tian Y, Zhang H: Characterization of disease-Associated N-linked glycoproteins. Proteomics 2013, 13(3-4):504-511. doi: 10.1002/pmic.201200333.
3. Bruckner K, Perez L, Clausen H, Cohen S: Glycosyltransferase activity of Fringe modulates Notch-Delta interactions. Nature 2000, 406(6794):411-414.
4. Isaji T, Gu J, Nishiuchi R, Zhao Y, Takahashi M, Miyoshi E, Honke K, Sekiguchi K, Taniguchi N: Introduction of bisecting GlcNAc into integrin α5β1 reduces ligand binding and down-regulates cell adhesion and cell migration. J Biol Chem 2004, 279(19):19747-19754. (Pubitemid 38623413)
5. Zheng M, Fang H, Hakomori S-i: Functional role of N-glycosylation in alpha 5 beta 1 integrin receptor. De-N-glycosylation induces dissociation or altered association of alpha 5 and beta 1 subunits and concomitant loss of fibronectin binding activity. J Biol Chem 1994, 269(16):12325-12331.
6. Drake PM, Cho W, Li B, Prakobphol A, Johansen E, Anderson NL, Regnier FE, Gibson BW, Fisher SJ: Sweetening the pot: Adding glycosylation to the biomarker discovery equation. Clin Chem 2010, 56(2):223-236.
7. Rademacher TW, Parekh RB, Dwek RA, Isenberg D, Rook G, Axford JS, Roitt I: The role of IgG glycoforms in the pathogenesis of rheumatoid arthritis. In Springer seminars in immunopathology. Springer; 1988:231-249.
8. Gebauer G, Müller-Ruchholtz W: Tumor marker concentrations in normal and malignant tissues of colorectal cancer patients and their prognostic relevance. Anticancer Res 1996, 17(4B):2939-2942. (Pubitemid 27434825)
9. Catalona WJ, Smith DS, Ratliff TL, Dodds KM, Coplen DE, Yuan JJ, Petros JA, Andriole GL: Measurement of prostate-specific antigen in serum as a screening test for prostate cancer. N Engl J Med 1991, 324(17):1156-1161.
10. Zhou L, Liu J, Luo F: Serum tumor markers for detection of hepatocellular carcinoma. World J Gastroenterol 2006, 12(8):1175.
11. Seregni E, Massimino M, Pallotti F, van der Hiel B, Cefalo G, Spreafico F, Fossati F, Bombardieri E: Serum and cerebrospinal fluid human chorionic gonadotropin (hCG) and alpha-fetoprotein (AFP) in intracranial germ cell tumors. Int J Biol Markers 2001, 17(2):112-118.
12. Simonds HM, Miles D: Adjuvant treatment of breast cancer: impact of monoclonal antibody therapy directed against the HER2 receptor. Expert Opin Biol Ther 2007, 7:487-491. (Pubitemid 46524673)
13. Alvarez-Manilla G, Warren NL, Atwood J III, Orlando R, Dalton S, Pierce M: Glycoproteomic analysis of embryonic stem cells: identification of potential glycobiomarkers using lectin affinity chromatography of glycopeptides†. J Proteome Res 2009, 9(5):2062-2075.
14. Debray H, Decout D, Strecker G, Spik G, Montreuil J: Specificity of twelve lectins towards oligosaccharides and glycopeptides related to N-glycosylproteins. Eur J Biochem 1981, 117(1):41-51.
15. Gerken TA, Revoredo L, Thome JJ, Tabak LA, Vester-Christensen MB, Clausen H, Gahlay GK, Jarvis DL, Johnson RW, Moniz HA: The lectin domain of the polypeptide GalNAc transferase family of glycosyltransferases (ppGalNAc T's) acts as a switch directing glycopeptide substrate glycosylation in an N-or C-Direction, further controlling mucin-Type O-glycosylation. J Biol Chem 2013, 288:19900-19914.
16. Tang J, Liu Y, Qi D, Yao G, Deng C, Zhang X: On-plate-selective enrichment of glycopeptides using boronic acid-modified gold nanoparticles for direct MALDI-QIT-TOF MS analysis. Proteomics 2009, 9(22):5046-5055.
17. Xu Y, Zhang L, Lu H, Yang P: On-plate enrichment of glycopeptides by using boronic acid functionalized gold-coated Si wafer. Proteomics 2010, 10(5):1079-1086.
18. Tian Y, Zhou Y, Elliott S, Aebersold R, Zhang H: Solid-phase extraction of N-linked glycopeptides. Nat Protoc 2007, 2(2):334-339. (Pubitemid 47040048)
19. Zhang H, Li X-j, Martin DB, Aebersold R: Identification and quantification of Nlinked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat Biotechnol 2003, 21(6):660-666. doi: 10.1038/nbt827. (Pubitemid 36638093)
20. Zhou Y, Aebersold R, Zhang H: Isolation of N-Linked Glycopeptides from Plasma. Anal Chem 2007, 79(15):5826-5837. doi: 10.1021/ac0623181. (Pubitemid 47229834)
21. Jensen PH, Mysling S, Højrup P, Jensen ON: Glycopeptide enrichment for MALDI-TOF mass spectrometry analysis by Hydrophilic Interaction Liquid Chromatography Solid Phase Extraction (HILIC SPE). Methods Mol Biol 2013, 951:131-144.
22. Liu L, Zhang Y, Zhang L, Yan G, Yao J, Yang P, Lu H: Highly specific revelation of rat serum glycopeptidome by boronic acid-functionalized mesoporous silica. Anal Chim Acta 2012, 753:64-72.
23. Hahm JI: Biomedical detection via macro- And nano-sensors fabricated with metallic and semiconducting oxides. J Biomed Nanotechnol 2013, 9(1):1-25.
24. Fan J, Huang Y, Finoulst I, Wu H-J, Deng Z, Xu R, Xia X, Ferrari M, Shen H, Hu Y: Serum peptidomic biomarkers for pulmonary metastatic melanoma identified by means of a nanopore-based assay. Cancer Lett 2013, 334(2):202-210. doi: 10.1016/j.canlet.2012.11.011. PubMed PMID: MEDLINE:23200677.
25. Bouamrani A, Hu Y, Tasciotti E, Li L, Chiappini C, Liu XW, Ferrari M: Mesoporous silica chips for selective enrichment and stabilization of low molecular weight proteome. Proteomics 2010, 10(3):496-505. doi: DOI 10.1002/pmic.200900346. PubMed PMID: ISI:000274707400012.
26. Hu Y, Bouamrani A, Tasciotti E, Li L, Liu XW, Ferrari M: Tailoring of the nanotexture of mesoporous silica films and their functionalized derivatives for selectively harvesting Low molecular weight protein. ACS Nano 2010, 4(1):439-451. doi: Doi 10.1021/Nn901322d. PubMed PMID: ISI:000273863400055.
27. Fan J, Deng XY, Gallagher JW, Huang HY, Huang Y, Wen JG, Ferrari M, Shen HF, Hu Y: Monitoring the progression of metastatic breast cancer on nanoporous silica chips. Philos Trans R Soc A Math Phys Eng Sci 2012, 370(1967):2433-2447. doi: 10.1098/rsta.2011.0444. PubMed PMID: WOS:000302936400008.
28. Li Y, Li Y, Chen T, Kuklina AS, Bernard P, Esteva FJ, Shen H, Ferrari M, Hu Y: Circulating proteolytic products of carboxypeptidase N for early detection of breast cancer. Clin Chem 2013, 60:233-242. Epub 2013/10/23. doi: clinchem.2013.211953. PubMed PMID: 24146311.
29. Zheng G, Patolsky F, Cui Y, Wang WU, Lieber CM: Multiplexed electrical detection of cancer markers with nanowire sensor arrays. Nat Biotechnol 2005, 23(10):1294-1301. doi: 10.1038/nbt1138. (Pubitemid 41486858)
30. Chen RJ, Bangsaruntip S, Drouvalakis KA, Kam NWS, Shim M, Li Y, Kim W, Utz PJ, Dai H: Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors. Proc Natl Acad Sci 2003, 100(9):4984-4989. (Pubitemid 36542645)
31. Dorfman A, Kumar N, Hahm J: Nanoscale ZnO-enhanced fluorescence detection of protein interactions. Adv Mater 2006, 18(20):2685-2690. doi: 10.1002/adma.200502616. (Pubitemid 44664102)
32. Ongay S, Boichenko A, Govorukhina N, Bischoff R: Glycopeptide enrichment and separation for protein glycosylation analysis. J Sep Sci 2012, 35(18):2341-2372. doi: 10.1002/jssc.201200434.
33. Zhou W, Yao N, Yao G, Deng C, Zhang X, Yang P: Facile synthesis of aminophenylboronic acid-functionalized magnetic nanoparticles for selective separation of glycopeptides and glycoproteins. Chem Commun 2008, 43:5577-5579. doi: 10.1039/b808800d.
34. Zhang Y, Kuang M, Zhang L, Yang P, Lu H: An accessible protocol for solid-phase extraction of N-linked glycopeptides through reductive amination by amine-functionalized magnetic nanoparticles. Anal Chem 2013, 85(11):5535-5541. doi: 10.1021/ac400733y.
35. Zhang L, Xu Y, Yao H, Xie L, Yao J, Lu H, Yang P: Boronic acid functionalized core-satellite composite nanoparticles for advanced enrichment of glycopeptides and glycoproteins. Chem A Eur J 2009, 15(39):10158-10166.
36. Xiong Z, Qin H, Wan H, Huang G, Zhang Z, Dong J, Zhang L, Zhang W, Zou H: Layer-by-layer assembly of multilayer polysaccharide coated magnetic nanoparticles for the selective enrichment of glycopeptides. Chem Commun 2013, 49(81):9284-9286. doi: 10.1039/c3cc45008b.
37. Tran TH, Park S, Lee H, Park S, Kim B, Kim O-H, Oh B-c, Lee D, Lee H: Ultrasmall gold nanoparticles for highly specific isolation/enrichment of N-linked glycosylated peptides. Analyst 2012, 137(4):991-998.
38. Tsutsumi H, Ohkusa H, Park H, Takahashi T, Yuasa H, Mihara H: Gold nanoparticles conjugated with monosaccharide-modified peptide for lectin detection. Bioorg Med Chem Lett 2012, 22(22):6825-6827. doi: 10.1016/j.bmcl.2012.09.051.
39. Ma W-F, Li L-L, Zhang Y, An Q, You L-J, Li J-M, Zhang Y-T, Xu S, Yu M, Guo J, Lu H-J, Wang C-C: Ligand-free strategy for ultrafast and highly selective enrichment of glycopeptides using Ag-coated magnetic nanoarchitectures. J Mater Chem 2012, 22(45):23981-23988. doi: 10.1039/c2jm35196j.
40. Rouquerol J, Avnir D, Fairbridge C, Everett D, Haynes J, Pernicone N, Ramsay J, Sing K, Unger K: Recommendations for the characterization of porous solids (Technical Report). Pure Appl Chem 1994, 66(8):1739-1758.
41. Xu Y, Wu Z, Zhang L, Lu H, Yang P, Webley PA, Zhao D: Highly specific enrichment of glycopeptides using Boronic acid-functionalized Mesoporous silica. Anal Chem 2008, 81(1):503-508. doi: 10.1021/ac801912t.
42. Zhang HY, Yao GP, Deng CH, Lu HJ, Yang PY: Facile synthesis of Boronic acid-functionalized magnetic Mesoporous silica nanocomposites for highly specific enrichment of glycopeptides. Chin J Chem 2011, 29(4):835-839. doi: 10.1002/cjoc.201190166. PubMed PMID: WOS:000289938000037.
43. Wan H, Yan J, Yu L, Sheng Q, Zhang X, Xue X, Li X, Liang X: Zirconia layer coated mesoporous silica microspheres as HILIC SPE materials for selective glycopeptide enrichment. Analyst 2011, 136(21):4422-4430. doi: 10.1039/c1an15554g.
44. Qin H, Zhao L, Li R, Wu RA, Zou H: Size-selective enrichment of N-linked glycans using highly ordered Mesoporous carbon material and detection by MALDI-TOF MS. Anal Chem 2011, 83(20):7721-7728. doi: 10.1021/ac201198q.
45. Novoselov KS, Geim AK, Morozov SV, Jiang D, Zhang Y, Dubonos SV, Grigorieva IV, Firsov AA: Electric field effect in atomically thin carbon films. Science 2004, 306(5696):666-669. doi: 10.1126/science.1102896. PubMed PMID: WOS:000224756700045. (Pubitemid 39440910)
46. Zhang W, Han H, Bai H, Tong W, Zhang Y, Ying W, Qin W, Qian X: A highly efficient and visualized method for glycan enrichment by selfassembling pyrene derivative functionalized free graphene oxide. Anal Chem 2013, 85(5):2703-2709. doi: 10.1021/ac303101t.
47. Zhang X, Teng Y, Fu Y, Zhang S, Wang T, Wang C, Jin L, Zhang W: Lectinbased electrochemical biosensor constructed by functionalized carbon nanotubes for the competitive assay of glycan expression on living cancer cells. Chem Sci 2011, 2(12):2353-2360. doi: 10.1039/c1sc00562f.