On-plate enrichment of glycopeptides by using boronic acid functionalized gold-coated Si wafer

Proteomics

Volumn 10, Issue 5, 2010, Pages 1079-1086

  Xu, Yawei ^a   Zhang, Lijuan ^a   Lu, Haojie ^a   Yang, Pengyuan ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

Boronic acid; Enrichment; Glycopeptide; MALDI; On plate; Technology

Indexed keywords

BORONIC ACID DERIVATIVE; GLYCOPEPTIDE; GOLD; PHOSPHATE BUFFERED SALINE; SILICON;

AMINO ACID SEQUENCE; ARTICLE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN BINDING; SENSITIVITY ANALYSIS; SYNTHESIS;

BORONIC ACIDS; GLYCOPEPTIDES; GLYCOPROTEINS; GOLD; LIMIT OF DETECTION; SILICON; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRYPSIN;

EID: 77649160820     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200900097     Document Type: Article

References (27)

1. Hung, K. C., Rashidzadeh, H., Wang, Y., Guo, B., Use of Paraffin wax film in MALDI-TOF analysis of DNA. Anal. Chem. 1998, 70, 3088-3093.
2. Hung, K. C., Ding, H., Guo, B., Use of poly(tetra-fluoroethylene)s as a sample support for the MALDI-TOF analysis of DNA and proteins. Anal. Chem. 1999, 71, 518-521.
3. Burkhart, W. A., Moyer, M. B., Bailey, J. M., Miller, C. G., Electroblotting of proteins to Teflon tape acid membranes for N- and C-terminal sequence analysis. Anal. Biochem. 1996, 236, 364-367.
4. Jia, W., Wu, H., Lu, H., Li, N. et al., Rapid and automatic onplate desalting protocol for MALD-MS: using imprinted hydrophobic polymer template. Proteomics 2007, 7, 2497-2506.
5. Zhang, Y., Fang, J., Kuang, Y., Guo, X. et al., Wash-free insitu self-desalting and peptide enrichment by block copolymer analyzed with MALDI-TOFMS. Chem. Commun. 2007, 43, 4468-4470.
6. Wang, H., Tseng, K., Lebrilla, C. B., A general method for producing bioaffinity MALDI probes. Anal. Chem. 1999, 71, 2014-2020.
7. Lin, H. Y., Chen, C. T., Chen, Y. C., Detection of phosphopeptides by localized surface plasma resonance of titaniacoated gold nanoparticles immobilized on glass substrates. Anal. Chem. 2006, 78, 6873-6878.
8. Qiao, L., Roussel, C., Wan, J., Yang, P. et al., Specific on-plate enrichment of phosphorylated peptides for direct MALDI-TOF MS analysis. J. Proteome Res. 2007, 6, 4763-4769.
9. Dunn, J. D., Igrisan, E. A., Palumbo, A. M., Reid, G. E., Bruening, M. L., Phosphopeptide enrichment using MALDI plates modified with high-capacity polymer brushes. Anal. Chem. 2008, 80, 5727-5735.
10. Dwek, R. A., Glycobiology: toward understanding the function of sugars. Chem. Rev. 1996, 96, 683-720.
11. Rudd, P. M., Dwek, R. A., Glycosylation: heterogeneity and the 3D structure of proteins. Crit. Rev. Biochem. Mol. Biol. 1997, 32, 1-100.
12. Daniels, M. A., Hogquist, K. A., Jameson, S. C., Sweet 'n' sour: the impact of differential glycosylation on T cell responses. Nat. Immunol. 2002, 3, 903-910.
13. Dwek, M. V., Ross, H. A., Leathem, A. J. C., Proteome and glycosylation mapping identifies post-translational modifications associated with aggressive breast cancer. Proteomics 2001, 1, 756-762.
14. Freeze, H. H., Update and perspectives on congenital disorders of glycosylation. Glycobiology 2001, 11, 129-143.
15. Apweiler, R., Hermjakob, H., Sharon, N., On the frequency of protein glycosylation, as deduced fromanalysis of the SWISSPROT database. Biochim. Biophys. Acta 1999, 1473, 4-8.
16. Bunkenborg, J., Pilch, B. J., Podtelejnikov, A. V., Wisniewski, J. R., Screening for N-glycosylated proteins by liquid chromatography mass spectrometry. Proteomics 2004, 4, 454-465.
17. Wang, L., Li,F., Sun, W., Wu, S. et al., Concanavalin A-captured glycoproteins in healthy human urine. Mol. Cell. Proteomics 2006, 5, 560-562.
18. Cummings, R. D., Kornfeld, S., Fractionation of asparagine-lineked oligosaccharides by serial lectin-agarose affinity-chromatography - a rapid, sensity, and specific technique. J. Biol. Chem. 1982, 257, 1235-1240.
19. Alvarez-Manilla, G., Atwood, III., J., Guo, Y., Warren, L. et al., Tools for glycoproteomic analysis: Size exclusion chromatography facilitates identification of tryptic glycopeptides with N-linked glycosylation sites. J. Proteome Res. 2006, 5, 701-708.
20. Wada, Y., Tajiri, M., Yoshida, S., Hydrophilic affinity isolation and MALDI multiple-stage tandem mass spectrometry of glycopeptides for glycoproteomics. Anal. Chem. 2004, 76, 6560-6565.
21. Tian, Y., Zhou, Y., Elliott, S., Aebersold, R., Zhang, H., Solidphase extraction of N-linked glycopeptides. Nat. Protoc. 2007, 2, 334-339.
22. Sparbier, K., Koch, S., Kessler, I., Wenzel, T., Kostrzewa, M., Selective isolation of glycoproteins and glycopeptides for MALDI-TOF MS detection supported by magnetic particles. J. Biomol. Tech. 2005, 16, 407-413.
23. Rawn, J. D., Lienhard, G. E., Binding of boronic acids to chymotrypsin. Biochemistry 1974, 13, 3124-3130.
24. Xu, Y., Wu, Z., Zhang, L., Lu, H. et al., Highly specific enrichment of glycopeptides using boronic acid-functionalized mesoporous silica. Anal. Chem. 2009, 81, 503-508.
25. Bain, C. D., Troughton, E. B., Tao, Y.-T., Evall, J. et al., Formation of monolayer films by the spontaneous assembly of organic thiols from solution onto gold. J. Am. Chem. Soc. 1989, 111, 321-335.
26. Qian, W. J., Monroe, M. E., Liu, T., Jacobs, J. M . et al., Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using O-16/O-18 labeling and the accurate mass and time tag approach. Mol. Cell. Proteomics 2005, 4, 700-709.
27. Yao, X., Freas, A., Ramirez, J., Demirev, P. A., Fenselau, C., Proteolytic O-18 labeling for comparative proteomics: model studies with two serotypes of adenovirus. Anal. Chem. 2001, 73, 2836-2842.