GlyQ-IQ: Glycomics quintavariate-informed quantification with high-performance computing and glycogrid 4D visualization

Analytical Chemistry

Volumn 86, Issue 13, 2014, Pages 6268-6276

  Kronewitter, Scott R ^a   Slysz, Gordon W ^a   Marginean, Ioan ^a   Hagler, Clay D ^a   Lamarche, Brian L ^a   Zhao, Rui ^a   Harris, Myanna Y ^a   Monroe, Matthew E ^a   Polyukh, Christina A ^a   Crowell, Kevin L ^a   Fillmore, Thomas L ^a   Carlson, Timothy S ^a   Camp, David G ^a   Moore, Ronald J ^a   Payne, Samuel H ^a   Anderson, Gordon A ^a   Smith, Richard D ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BODY FLUIDS; CHROMATOGRAPHIC ANALYSIS; DATA PROCESSING; ISOMERS; ISOTOPES; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY;

ANALYSIS APPROACH; CHROMATOGRAPHIC PEAKS; ELEMENTAL COMPOSITIONS; EXTRACTED ION CHROMATOGRAM; HIGH-PERFORMANCE COMPUTING; HIGH-RESOLUTION MASS SPECTRUM; LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY; STRUCTURAL ISOMERS;

POLYSACCHARIDES;

POLYSACCHARIDE;

BLOOD; COMPUTER PROGRAM; GLYCOBIOLOGY; HUMAN; LIQUID CHROMATOGRAPHY; PROCEDURES; TANDEM MASS SPECTROMETRY;

CHROMATOGRAPHY, LIQUID; GLYCOMICS; HUMANS; POLYSACCHARIDES; SOFTWARE; TANDEM MASS SPECTROMETRY;

EID: 84903735187     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac501492f     Document Type: Article

References (28)

1. An, H. J.; Froehlich, J. W.; Lebrilla, C. B. Curr. Opin. Chem. Biol. 2009, 13, 421-426
2. Strum, J. S.; Nwosu, C. C.; Hua, S.; Kronewitter, S. R.; Seipert, R. R.; Bachelor, R. J.; An, H. J.; Lebrilla, C. B. Anal. Chem. 2013, 85, 5666-5675
3. Goldberg, D.; Bern, M.; North, S. J.; Haslam, S. M.; Dell, A. Bioinformatics 2009, 25, 365-371
4. Kronewitter, S. R.; An, H. J.; de Leoz, M. L.; Lebrilla, C. B.; Miyamoto, S.; Leiserowitz, G. S. Proteomics 2009, 9, 2986-2994
5. Goldberg, D.; Sutton-Smith, M.; Paulson, J.; Dell, A. Proteomics 2005, 5, 865-875
6. Kronewitter, S. R.; De Leoz, M. L.; Strum, J. S.; An, H. J.; Dimapasoc, L. M.; Guerrero, A.; Miyamoto, S.; Lebrilla, C. B.; Leiserowitz, G. S. Proteomics 2012, 12, 2523-2538
7. Ceroni, A.; Maass, K.; Geyer, H.; Geyer, R.; Dell, A.; Haslam, S. M. J. Proteome Res. 2008, 7, 1650-1659
8. Maass, K.; Ranzinger, R.; Geyer, H.; von der Lieth, C. W.; Geyer, R. Proteomics 2007, 7, 4435-4444
9. Yu, C. Y.; Mayampurath, A.; Hu, Y.; Zhou, S.; Mechref, Y.; Tang, H. Bioinformatics 2013, 29, 1706-1707
10. Vakhrushev, S. Y.; Dadimov, D.; Peter-Katalinic, J. Anal. Chem. 2009, 81, 3252-3260
11. Maxwell, E.; Tan, Y.; Tan, Y.; Hu, H.; Benson, G.; Aizikov, K.; Conley, S.; Staples, G. O.; Slysz, G. W.; Smith, R. D.; Zaia, J. PLoS One 2012, 7, e45474
12. Renard, B. Y.; Kirchner, M.; Steen, H.; Steen, J. A. J.; Hamprecht, F. A. BMC Bioinf. 2008, 9, 355
13. Senko, M. W.; Beu, S. C.; McLaffertycor, F. W. J. Am. Soc. Mass Spectrom. 1995, 6, 229-233
14. An, H. J.; Tillinghast, J. S.; Woodruff, D. L.; Rocke, D. M.; Lebrilla, C. B. J. Proteome Res. 2006, 5, 2800-2808
15. Rost, H. L.; Rosenberger, G.; Navarro, P.; Gillet, L.; Miladinovic, S. M.; Schubert, O. T.; Wolski, W.; Collins, B. C.; Malmstrom, J.; Malmstrom, L.; Aebersold, R. Nat. Biotechnol. 2014, 32, 219-223
16. Marginean, I.; Kronewitter, S. R.; Moore, R. J.; Slysz, G. W.; Monroe, M. E.; Anderson, G.; Tang, K.; Smith, R. D. Anal. Chem. 2012, 84, 9208-9213
17. Maiolica, A.; Borsotti, D.; Rappsilber, J. Proteomics 2005, 5, 3847-3850
18. Jaitly, N.; Mayampurath, A.; Littlefield, K.; Adkins, J. N.; Anderson, G. A.; Smith, R. D. BMC Bioinf. 2009, 10, 87
19. Horn, D. M.; Zubarev, R. A.; McLafferty, F. W. J. Am. Soc. Mass Spectrom. 2000, 11, 320-332
20. Barkauskas, D. A.; An, H. J.; Kronewitter, S. R.; de Leoz, M. L.; Chew, H. K.; de Vere White, R. W.; Leiserowitz, G. S.; Miyamoto, S.; Lebrilla, C. B.; Rocke, D. M. Bioinformatics 2009, 25, 251-257
21. Bochkanov, S.; Bystritsky, V. ALGLIB; 2013, (www.alglib.net).
22. Goodman, K. J.; Brenna, J. T. Anal. Chem. 1994, 66, 1294-1301
23. Schulz-Trieglaff, O.; Pfeifer, N.; Gropl, C.; Kohlbacher, O.; Reinert, K. BMC Bioinf. 2008, 9, 423
24. Gabelica, V.; De Pauw, E. Mass Spectrom. Rev. 2005, 24, 566-587
25. Zaia, J. OMICS: J. Integr. Biol. 2010, 14, 401-418
26. Huddleston, M. J.; Bean, M. F.; Carr, S. A. Anal. Chem. 1993, 65, 877-884
27. Slysz, G. W.; Steinke, L.; Ward, D. M.; Klatt, C. G.; Clauss, T. R. W.; Purvine, S. O.; Payne, S. H.; Anderson, G. A.; Smith, R. D.; Lipton, M. S. J. Proteome Res. 2014, 13, 1200-1210
28. Kronewitter, S. R.; An, H. J.; de Leoz, M. L.; Lebrilla, C. B.; Miyamoto, S.; Leiserowitz, G. S. Proteomics 2009, 9, 2986-2994