메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Evaluating bias-reducing protocols for RNA sequencing library preparation

Author keywords

Bias; CircLigase; Ion Torrent; Mth K97A; Next generation sequencing; Small RNA; Thermostable

Indexed keywords

COMPLEMENTARY DNA; RNA LIGASE; RNA;

EID: 84903685076     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-569     Document Type: Article
Times cited : (23)

References (13)
  • 1
    • 77956456653 scopus 로고    scopus 로고
    • Sequencing bias: comparison of different protocols of microRNA library construction
    • Tian G, Yin X, Luo H, Xu X, Bolund L, Zhang X, Gan SQ, Li N. Sequencing bias: comparison of different protocols of microRNA library construction. BMC Biotechnol 2010, 10:64.
    • (2010) BMC Biotechnol , vol.10 , pp. 64
    • Tian, G.1    Yin, X.2    Luo, H.3    Xu, X.4    Bolund, L.5    Zhang, X.6    Gan, S.Q.7    Li, N.8
  • 2
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324(5924):218-223.
    • (2009) Science , vol.324 , Issue.5924 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 4
    • 84861548193 scopus 로고    scopus 로고
    • Summarizing and correcting the GC content bias in high-throughput sequencing
    • Benjamini Y, Speed TP. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res 2012, 40(10):e72.
    • (2012) Nucleic Acids Res , vol.40 , Issue.10
    • Benjamini, Y.1    Speed, T.P.2
  • 6
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36(16):e105.
    • (2008) Nucleic Acids Res , vol.36 , Issue.16
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 8
    • 84868240119 scopus 로고    scopus 로고
    • Small RNA expression profiling by high-throughput sequencing: implications of enzymatic manipulation
    • Zhuang F, Fuchs RT, Robb GB. Small RNA expression profiling by high-throughput sequencing: implications of enzymatic manipulation. J Nucleic Acids 2012, 2012:360358.
    • (2012) J Nucleic Acids , vol.2012 , pp. 360358
    • Zhuang, F.1    Fuchs, R.T.2    Robb, G.B.3
  • 9
    • 79959757662 scopus 로고    scopus 로고
    • T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis
    • Viollet S, Fuchs RT, Munafo DB, Zhuang F, Robb GB. T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis. BMC Biotechnol 2011, 11:72.
    • (2011) BMC Biotechnol , vol.11 , pp. 72
    • Viollet, S.1    Fuchs, R.T.2    Munafo, D.B.3    Zhuang, F.4    Robb, G.B.5
  • 11
    • 84870483002 scopus 로고    scopus 로고
    • Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase - engineering a thermostable ATP independent enzyme
    • Zhelkovsky AM, McReynolds LA. Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase - engineering a thermostable ATP independent enzyme. BMC Mol Biol 2012, 13(1):24.
    • (2012) BMC Mol Biol , vol.13 , Issue.1 , pp. 24
    • Zhelkovsky, A.M.1    McReynolds, L.A.2
  • 12
    • 3843051369 scopus 로고    scopus 로고
    • RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2
    • Nandakumar J, Ho CK, Lima CD, Shuman S. RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2. J Biol Chem 2004, 279(30):31337-31347.
    • (2004) J Biol Chem , vol.279 , Issue.30 , pp. 31337-31347
    • Nandakumar, J.1    Ho, C.K.2    Lima, C.D.3    Shuman, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.