Upconversion nanoparticle-based ligase-assisted method for specific and sensitive detection of T790M mutation in epidermal growth factor receptor

Biosensors and Bioelectronics

Volumn 62, Issue , 2014, Pages 120-126

  Wang, Peng ^a   Joshi, Padmanabh ^a   Alazemi, Abdulrahman ^a   Zhang, Peng ^a  

^a UNIVERSITY OF CINCINNATI   (United States)

Author keywords

Epidermal growth factor receptor (EGFR); Ligation; T790M mutation; Upconversion nanoparticle

Indexed keywords

DNA; ENERGY TRANSFER; THERMAL CYCLING;

EPIDERMAL GROWTH FACTOR RECEPTORS; INTERCALATING DYE; LIGATION; NUMBER OF FACTORS; RESONANCE ENERGY TRANSFER; SENSITIVE DETECTION; T790M MUTATION; UPCONVERSION NANOPARTICLES;

NANOPARTICLES;

EPIDERMAL GROWTH FACTOR RECEPTOR; LIGASE; NANOPARTICLE; DNA; DNA PROBE; FLUORIDE; LUMINESCENT AGENT; ORGANIC COMPOUND; SODIUM YTTRIUMTETRAFLUORIDE; SYBR GREEN I; YTTRIUM;

AMINO ACID SEQUENCE; ARTICLE; BIOTRANSFORMATION; CONTROLLED STUDY; DNA PROBE; DNA STRAND; GENE AMPLIFICATION; GENE MUTATION; GENE TARGETING; PROCESS OPTIMIZATION; PROTEIN ANALYSIS; SENSITIVITY AND SPECIFICITY; SYNTHESIS; TEMPERATURE; THERMAL ANALYSIS; BASE MISPAIRING; CHEMISTRY; GENETICS; LUMINESCENCE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POINT MUTATION;

BASE PAIR MISMATCH; BASE SEQUENCE; DNA; DNA PROBES; FLUORIDES; LUMINESCENT AGENTS; LUMINESCENT MEASUREMENTS; MOLECULAR SEQUENCE DATA; NANOPARTICLES; ORGANIC CHEMICALS; POINT MUTATION; RECEPTOR, EPIDERMAL GROWTH FACTOR; YTTRIUM;

EID: 84903597230     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2014.06.037     Document Type: Article

References (30)

1. Asano H., Toyooka S., Tokumo M., Ichimura K., Aoe K., Ito S., Tsukuda K., Ouchida M., Aoe M., Katayama H., Hiraki A., Sugi K., Kiura K., Date H., Shimizu N. Clin. Cancer Res. 2006, 12:43-48.
2. Balak M.N., Gong Y., Riely G.J., Somwar R., Li A.R., Zakowski M.F., Chiang A., Yang G., Ouerfelli O., Kris M.G., Ladanyi M., Miller V.A., Pao W. Clin. Cancer Res. 2006, 12:6494-6501.
3. Barany F. Proc. Natl. Acad. Sci. USA 1991, 88:189-193.
4. Cao W.G. Clin. Appl. Immunol. Rev. 2001, 2:33-43.
5. Gazdar A.F., Shigematsu H., Herz J., Minna J.D. Trends Mol. Med. 2004, 10:481-486.
6. Guo Y., Kumar M., Zhang P. Chem. Mater. 2007, 19(25):6071-6072.
7. Hoshi K., Takakura H., Mitani Y., Tatsumi K., Momiyama N., Ichikawa Y., Togo S., Miyag T., Kawai Y., Kogo Y., Kikuchi T., Kato C., Arakawa T., Uno S., Cizdziel P.E., Lezhava A., Ogawa N., Hayashizaki Y., Shimada H. Clin. Cancer Res. 2007, 13:4974-4983.
8. Inukai M., Toyooka S., Ito S., Asano H., Ichihara S., Soh J., Suehisa H., Ouchida M., Aoe K., Aoe M., Kiura K., Shimizu N., Date H. Cancer Res. 2006, 66:7854-7858.
9. Johnson B.E., Janne P.A. Cancer Res. 2005, 65:7525-7529.
10. Kobayashi S., Boggon T.J., Dayaram T., Jänne P.A., Kocher O., Meyerson M., Johnson B.E., Eck M.J., Tenen D.G., Halmos B. N. Engl. J. Med. 2005, 352:786-792.
11. Kosaka T., Yatabe Y., Endoh H., Yoshida K., Hida T., Tsuboi M., Tada H., Kuwano H., Mitsudomi T. Clin. Cancer Res. 2006, 12:5764-5769.
12. Kumar M., Guo Y., Zhang P. Biosens. Bioelectron. 2009, 24:1522-1526.
13. Kumar M., Zhang P. Biosens. Bioelectron. 2010, 25:2431-2435.
14. Kwak E.L., Sordella R., Bell D.W., Godin-Heymann N., Okimoto R.A., Brannigan B.W., Harris P.L., Driscoll D.R., Fidias P., Lynch T.J., Rabindran S.K., McGinnis J.P., Wissner A., Sharma S.V., Isselbacher K.J., Settleman J., Haber D.A. Proc. Natl. Acad. Sci. USA 2005, 102:7665-7670.
15. Li J., Wang L., Jänne P.A., Makrigiorgos G.M. Clin. Chem. 2009, 55:748-756.
16. Lynch T.J., Bell D.W., Sordella R., Gurubhagavatula S., Okimoto R.A., Brannigan B.W., Harris P.L., Haserlat S.M., Supko J.G., Haluska F.G., Louis D.N., Christiani D.C., Settleman J., Haber D.A. N. Eng. J. Med. 2004, 350:2129-2139.
17. Miyazawa H., Tanaka T., Nagai Y., Matsuoka M., Huqun, Sutani A., Udagawa K., Zhang J., Hirama T., Murayama Y., Koyama N., Ikebuchi K., Nagata M., Kanazawa M., Nukiwa T., Takenoshita S., Kobayashi K., Hagiwara K. Cancer Sci. 2008, 99:595-600.
18. Paez J.G., Janne P.A., Lee J.C., Tracy S., Greulich H., Gabriel S., Herman P., Kaye F.J., Lindeman N., Boggon T.J., Naoki K., Sasaki H., Fujii Y., Eck M.J., Sellers W.R., Johnson B.E., Meyerson M. Science 2004, 304:1497-1500.
19. Palmer R.J., Butenhoff J.L., Stevens J.B. Environ. Res. 1987, 43:142-156.
20. Pao W., Miller V., Zakowski M., Doherty J., Politi K., Sarkaria I., Singh B., Heelan R., Rusch V., Fulton L., Mardis E., Kupfer D., Wilson R., Kris M., Varmus H. Proc. Natl. Acad. Sci. USA 2004, 101:13306-13311.
21. Pao W., Miller V.A., Politi K.A., Riely G.J., Somwar R., Zakowski M.F., Kris M.G., Varmus H. PLoS Med 2005, 2:e73.
22. Shi L., Perkins R.G., Fang H., Tong W. Curr. Opin. Biotechnol. 2008, 19(1):10-18.
23. Shih J.Y., Gow C.H., Yang P.C. N. Engl. J. Med. 2005, 353:207-208.
24. Thomas R.K., Greulich H., Yuza Y., Lee J.C., Tengs T., Feng W., Chen T.H., Nickerson E., Simons J., Egholm M., Rothberg J.M., Sellers W.R., Meyerson M.L. Cold Spring Harb. Symp. Quant. Biol. 2005, 70:73-81.
25. Tong J., Cao W.G., Barany F. Nucleic Acids Res. 1999, 27:788-794.
26. Wang F., Liu X. Chem. Soc. Rev. 2009, 38:976-989.
27. Wang P., Ahmadov T.O., Lee C., Zhang P. RSC Adv 2013, 3:16326-16329.
28. Yatabe Y., Hida T., Horio Y., Kosaka T., Takahashi T., Mitsudomi T. J. Mol. Diagn. 2006, 8:335-341.
29. Zhang P., Rogelj S., Nguyen K., Wheeler D. J. Am. Chem. Soc. 2006, 128:12401-12411.
30. Zhang P., Steelant W., Kumar M., Scholfield M. J. Am. Chem. Soc. 2007, 129:4526-4527.