-
1
-
-
84868516062
-
Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia
-
Zaki AM, van Boheemen S, Bestebroer TM, Osterhaus AD, Fouchier RA. 2012. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N. Engl. J. Med. 367:1814-1820. http://dx.doi.org/10.1056/ NEJMoa1211721.
-
(2012)
N. Engl. J. Med.
, vol.367
, pp. 1814-1820
-
-
Zaki, A.M.1
van Boheemen, S.2
Bestebroer, T.M.3
Osterhaus, A.D.4
Fouchier, R.A.5
-
2
-
-
84871415482
-
Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans
-
van Boheemen S, de Graaf M, Lauber C, Bestebroer TM, Raj VS, Zaki AM, Osterhaus AD, Haagmans BL, Gorbalenya AE, Snijder EJ, Fouchier RA. 2012. Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans. mBio 3(6):e00473-12. http://dx.doi.org/10.1128/mBio.00473-12.
-
(2012)
mBio
, vol.3
, Issue.6
-
-
van Boheemen, S.1
de Graaf, M.2
Lauber, C.3
Bestebroer, T.M.4
Raj, V.S.5
Zaki, A.M.6
Osterhaus, A.D.7
Haagmans, B.L.8
Gorbalenya, A.E.9
Snijder, E.J.10
Fouchier, R.A.11
-
4
-
-
84879055980
-
Family cluster of Middle East respiratory syndrome coronavirus infections
-
Memish ZA, Zumla AI, Al-Hakeem RF, Al-Rabeeah AA, Stephens GM. 2013. Family cluster of Middle East respiratory syndrome coronavirus infections. N. Engl. J. Med. 368:2487-2494. http://dx.doi.org/10.1056/ NEJMoa1303729.
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 2487-2494
-
-
Memish, Z.A.1
Zumla, A.I.2
Al-Hakeem, R.F.3
Al-Rabeeah, A.A.4
Stephens, G.M.5
-
5
-
-
84893692769
-
-
WHO. Accessed 27 January. World Health Organization, Geneva, Switzerland
-
WHO. Accessed 27 January 2014. Middle East respiratory syndrome coronavirus (MERS-CoV). World Health Organization, Geneva, Switzerland. http://www.who.int/csr/don/2014_01_27mers/en/index.html.
-
(2014)
Middle East respiratory syndrome coronavirus (MERS-CoV).
-
-
-
6
-
-
0141889936
-
Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China
-
Guan Y, Zheng BJ, He YQ, Liu XL, Zhuang ZX, Cheung CL, Luo SW, Li PH, Zhang LJ, Guan YJ, Butt KM, Wong KL, Chan KW, Lim W, Shortridge KF, Yuen KY, Peiris JS, Poon LL. 2003. Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 302:276-278. http://dx.doi.org/10.1126/ science.1087139.
-
(2003)
Science
, vol.302
, pp. 276-278
-
-
Guan, Y.1
Zheng, B.J.2
He, Y.Q.3
Liu, X.L.4
Zhuang, Z.X.5
Cheung, C.L.6
Luo, S.W.7
Li, P.H.8
Zhang, L.J.9
Guan, Y.J.10
Butt, K.M.11
Wong, K.L.12
Chan, K.W.13
Lim, W.14
Shortridge, K.F.15
Yuen, K.Y.16
Peiris, J.S.17
Poon, L.L.18
-
7
-
-
84884377173
-
Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: A comparative serological study
-
Reusken CB, Haagmans BL, Müller MA, Gutierrez C, Godeke GJ, Meyer B, Muth D, Raj VS, Smits-Vries LS, Corman VM, Drexler JF, Smits SL, El Tahir YE, De Sousa R, van Beek J, Nowotny N, van Maanen K, Hidalgo-Hermoso E, Bosch BJ, Rottier P, Osterhaus A, Gortázar-Schmidt C, Drosten C, Koopmans MP. 2013. Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: a comparative serological study. Lancet Infect. Dis. 13:859-866. http://dx.doi.org/10.1016/S1473-3099(13)70164-6.
-
(2013)
Lancet Infect. Dis.
, vol.13
, pp. 859-866
-
-
Reusken, C.B.1
Haagmans, B.L.2
Müller, M.A.3
Gutierrez, C.4
Godeke, G.J.5
Meyer, B.6
Muth, D.7
Raj, V.S.8
Smits-Vries, L.S.9
Corman, V.M.10
Drexler, J.F.11
Smits, S.L.12
El Tahir, Y.E.13
De Sousa, R.14
van Beek, J.15
Nowotny, N.16
van Maanen, K.17
Hidalgo-Hermoso, E.18
Bosch, B.J.19
Rottier, P.20
Osterhaus, A.21
Gortázar-Schmidt, C.22
Drosten, C.23
Koopmans, M.P.24
more..
-
8
-
-
84884232066
-
Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt, June 2013
-
Perera RA, Wang P, Gomaa MR, El-Shesheny R, Kandeil A, Bagato O, Siu LY, Shehata MM, Kayed AS, Moatasim Y, Li M, Poon LL, Guan Y, Webby RJ, Ali MA, Peiris JS, Kayali G. 2013. Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt, June 2013. Euro Surveill. 18:20574.
-
(2013)
Euro Surveill.
, vol.18
, pp. 20574
-
-
Perera, R.A.1
Wang, P.2
Gomaa, M.R.3
El-Shesheny, R.4
Kandeil, A.5
Bagato, O.6
Siu, L.Y.7
Shehata, M.M.8
Kayed, A.S.9
Moatasim, Y.10
Li, M.11
Poon, L.L.12
Guan, Y.13
Webby, R.J.14
Ali, M.A.15
Peiris, J.S.16
Kayali, G.17
-
9
-
-
84884233679
-
Middle East respiratory syndrome coronavirus in bats, Saudi Arabia
-
Memish ZA, Mishra N, Olival KJ, Fagbo SF, Kapoor V, Epstein JH, Alhakeem R, Durosinloun A, Al Asmari M, Islam A, Kapoor A, Briese T, Daszak P, Rabeeah AA, Lipkin WI. 2013. Middle East respiratory syndrome coronavirus in bats, Saudi Arabia. Emerg. Infect. Dis. 19: 1819-1823. http://dx.doi.org/10.3201/eid1911.131172.
-
(2013)
Emerg. Infect. Dis.
, vol.19
, pp. 1819-1823
-
-
Memish, Z.A.1
Mishra, N.2
Olival, K.J.3
Fagbo, S.F.4
Kapoor, V.5
Epstein, J.H.6
Alhakeem, R.7
Durosinloun, A.8
Al Asmari, M.9
Islam, A.10
Kapoor, A.11
Briese, T.12
Daszak, P.13
Rabeeah, A.A.14
Lipkin, W.I.15
-
10
-
-
84892538696
-
Middle East respiratory syndrome coronavirus in dromedary camels: An outbreak investigation
-
Haagmans BL, Al Dhahiry SH, Reusken CB, Raj VS, Galiano M, Myers R, Godeke GJ, Jonges M, Farag E, Diab A, Ghobashy H, Alhajri F, Al-Thani M, Al-Marri SA, Al Romaihi HE, Al Khal A, Bermingham A, Osterhaus AD, Alhajri MM, Koopmans MP. 2014. Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation. Lancet Infect. Dis. 14:140-145. http://dx.doi.org/10.1016/S1473-3099(13)70690-X.
-
(2014)
Lancet Infect. Dis.
, vol.14
, pp. 140-145
-
-
Haagmans, B.L.1
Al Dhahiry, S.H.2
Reusken, C.B.3
Raj, V.S.4
Galiano, M.5
Myers, R.6
Godeke, G.J.7
Jonges, M.8
Farag, E.9
Diab, A.10
Ghobashy, H.11
Alhajri, F.12
Al-Thani, M.13
Al-Marri, S.A.14
Al Romaihi, H.E.15
Al Khal, A.16
Bermingham, A.17
Osterhaus, A.D.18
Alhajri, M.M.19
Koopmans, M.P.20
more..
-
11
-
-
84882918127
-
Interhuman transmissibility of Middle East respiratory syndrome coronavirus: Estimation of pandemic risk
-
Breban R, Riou J, Fontanet A. 2013. Interhuman transmissibility of Middle East respiratory syndrome coronavirus: estimation of pandemic risk. Lancet 382:694-699. http://dx.doi.org/10.1016/S0140-6736(13)61492-0.
-
(2013)
Lancet
, vol.382
, pp. 694-699
-
-
Breban, R.1
Riou, J.2
Fontanet, A.3
-
12
-
-
84890433761
-
Middle East respiratory syndrome coronavirus: Quantification of the extent of the epidemic, surveillance biases, and transmissibility
-
Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM. 2014. Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility. Lancet Infect. Dis. 14: 50-56. http://dx.doi.org/10.1016/S1473-3099(13)70304-9.
-
(2014)
Lancet Infect. Dis.
, vol.14
, pp. 50-56
-
-
Cauchemez, S.1
Fraser, C.2
Van Kerkhove, M.D.3
Donnelly, C.A.4
Riley, S.5
Rambaut, A.6
Enouf, V.7
van der Werf, S.8
Ferguson, N.M.9
-
13
-
-
84891503386
-
Investigation of anti-MERS-coronavirus antibodies in blood donors and abbatoir workers in Jeddah and Makkah, Kingdom of Saudi Arabia, fall 2012
-
Aburizaiza AS, Mattes FM, Azhar EI, Hassan AM, Memish ZA, Muth D, Meyer B, Lattwein E, Muller M, Drosten C. 2014. Investigation of anti-MERS-coronavirus antibodies in blood donors and abbatoir workers in Jeddah and Makkah, Kingdom of Saudi Arabia, fall 2012. J. Infect. Dis. 209(2):243-246. http://dx.doi.org/10.1093/infdis/jit589.
-
(2014)
J. Infect. Dis.
, vol.209
, Issue.2
, pp. 243-246
-
-
Aburizaiza, A.S.1
Mattes, F.M.2
Azhar, E.I.3
Hassan, A.M.4
Memish, Z.A.5
Muth, D.6
Meyer, B.7
Lattwein, E.8
Muller, M.9
Drosten, C.10
-
14
-
-
84880088201
-
Hospital outbreak of Middle East respiratory syndrome coronavirus
-
KSA MERS-CoV Investigation Team
-
Assiri A, McGeer A, Perl TM, Price CS, Al Rabeeah AA, Cummings DA, Alabdullatif ZN, Assad M, Almulhim A, Makhdoom H, Madani H, Alhakeem R, Al-Tawfiq JA, Cotten M, Watson SJ, Kellam P, Zumla AI, Memish ZA, KSA MERS-CoV Investigation Team. 2013. Hospital outbreak of Middle East respiratory syndrome coronavirus. N. Engl. J. Med. 369:407-416. http://dx.doi.org/10.1056/NEJMoa1306742.
-
(2013)
N. Engl. J. Med.
, vol.369
, pp. 407-416
-
-
Assiri, A.1
McGeer, A.2
Perl, T.M.3
Price, C.S.4
Al Rabeeah, A.A.5
Cummings, D.A.6
Alabdullatif, Z.N.7
Assad, M.8
Almulhim, A.9
Makhdoom, H.10
Madani, H.11
Alhakeem, R.12
Al-Tawfiq, J.A.13
Cotten, M.14
Watson, S.J.15
Kellam, P.16
Zumla, A.I.17
Memish, Z.A.18
-
15
-
-
84876747164
-
Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus
-
Cotten M, Lam TT, Watson SJ, Palser AL, Petrova V, Grant P, Pybus OG, Rambaut A, Guan Y, Pillay D, Kellam P, Nastouli E. 2013. Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus. Emerg. Infect. Dis. 19:736B-742B. http://dx.doi.org/ 10.3201/eid1905.130057.
-
(2013)
Emerg. Infect. Dis.
, vol.19
-
-
Cotten, M.1
Lam, T.T.2
Watson, S.J.3
Palser, A.L.4
Petrova, V.5
Grant, P.6
Pybus, O.G.7
Rambaut, A.8
Guan, Y.9
Pillay, D.10
Kellam, P.11
Nastouli, E.12
-
16
-
-
84882614929
-
Clinical features and virological analysis of a case of Middle East respiratory syndrome coronavirus infection
-
Drosten C, Seilmaier M, Corman VM, Hartmann W, Scheible G, Sack S, Guggemos W, Kallies R, Muth D, Junglen S, Müller MA, Haas W, Guberina H, Röhnisch T, Schmid-Wendtner M, Aldabbagh S, Dittmer U, Gold H, Graf P, Bonin F, Rambaut A, Wendtner CM. 2013. Clinical features and virological analysis of a case of Middle East respiratory syndrome coronavirus infection. Lancet Infect. Dis. 13:745-751. http:// dx.doi.org/10.1016/S1473-3099(13)70154-3.
-
(2013)
Lancet Infect. Dis.
, vol.13
, pp. 745-751
-
-
Drosten, C.1
Seilmaier, M.2
Corman, V.M.3
Hartmann, W.4
Scheible, G.5
Sack, S.6
Guggemos, W.7
Kallies, R.8
Muth, D.9
Junglen, S.10
Müller, M.A.11
Haas, W.12
Guberina, H.13
Röhnisch, T.14
Schmid-Wendtner, M.15
Aldabbagh, S.16
Dittmer, U.17
Gold, H.18
Graf, P.19
Bonin, F.20
Rambaut, A.21
Wendtner, C.M.22
more..
-
17
-
-
84890160752
-
Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: A descriptive genomic study
-
Cotten M, Watson SJ, Kellam P, Al-Rabeeah AA, Makhdoom HQ, Assiri A, Al-Tawfiq JA, Alhakeem RF, Madani H, AlRabiah FA, Al Hajjar SA, Al-nassir WN, Albarrak A, Flemban H, Balkhy HH, Alsubaie S, Palser AL, Gall A, Bashford-Rogers R, Rambaut A, Zumla AI, Memish ZA,. 2013. Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study. Lancet 382:1993-2002. http://dx.doi.org/10.1016/S0140-6736(1013)61887-61885.
-
(2013)
Lancet
, vol.382
, pp. 1993-2002
-
-
Cotten, M.1
Watson, S.J.2
Kellam, P.3
Al-Rabeeah, A.A.4
Makhdoom, H.Q.5
Assiri, A.6
Al-Tawfiq, J.A.7
Alhakeem, R.F.8
Madani, H.9
AlRabiah, F.A.10
Al Hajjar, S.A.11
Al-nassir, W.N.12
Albarrak, A.13
Flemban, H.14
Balkhy, H.H.15
Alsubaie, S.16
Palser, A.L.17
Gall, A.18
Bashford-Rogers, R.19
Rambaut, A.20
Zumla, A.I.21
Memish, Z.A.22
more..
-
18
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
Minin VN, Bloomquist EW, Suchard MA. 2008. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol. Biol. Evol. 25:1459-1471. http://dx.doi.org/10.1093/ molbev/msn090.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
19
-
-
84880053841
-
Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: A report of nosocomial transmission
-
MERS-CoV study group
-
Guery B, Poissy J, el Mansouf L, Séjourné C, Ettahar N, Lemaire X, Vuotto F, Goffard A, Behillil S, Enouf V, Caro V, Mailles A, Che D, Manuguerra JC, Mathieu D, Fontanet A, van der Werf S, MERS-CoV study group. 2013. Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: a report of nosocomial transmission. Lancet 381:2265-2272. http://dx.doi.org/ 10.1016/S0140-6736(13)60982-4.
-
(2013)
Lancet
, vol.381
, pp. 2265-2272
-
-
Guery, B.1
Poissy, J.2
el Mansouf, L.3
Séjourné, C.4
Ettahar, N.5
Lemaire, X.6
Vuotto, F.7
Goffard, A.8
Behillil, S.9
Enouf, V.10
Caro, V.11
Mailles, A.12
Che, D.13
Manuguerra, J.C.14
Mathieu, D.15
Fontanet, A.16
van der Werf, S.17
-
20
-
-
84888052193
-
Structure of the fusion core and inhibition of fusion by a heptad-repeat peptide derived from the S protein of MERS-CoV
-
Gao J, Lu G, Qi J, Li Y, Wu Y, Deng Y, Geng H, Li H, Wang Q, Xiao H, Tan W, Yan J, Gao GF. 2013. Structure of the fusion core and inhibition of fusion by a heptad-repeat peptide derived from the S protein of MERS-CoV. J. Virol. 87:13134-13140. http://dx.doi.org/10.1128/ JVI.02433-13.
-
(2013)
J. Virol.
, vol.87
, pp. 13134-13140
-
-
Gao, J.1
Lu, G.2
Qi, J.3
Li, Y.4
Wu, Y.5
Deng, Y.6
Geng, H.7
Li, H.8
Wang, Q.9
Xiao, H.10
Tan, W.11
Yan, J.12
Gao, G.F.13
-
21
-
-
84881479703
-
Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26
-
Lu G, Hu Y, Wang Q, Qi J, Gao F, Li Y, Zhang Y, Zhang W, Yuan Y, Bao J, Zhang B, Shi Y, Yan J, Gao GF. 2013. Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26. Nature 500:227-231. http://dx.doi.org/10.1038/nature12328.
-
(2013)
Nature
, vol.500
, pp. 227-231
-
-
Lu, G.1
Hu, Y.2
Wang, Q.3
Qi, J.4
Gao, F.5
Li, Y.6
Zhang, Y.7
Zhang, W.8
Yuan, Y.9
Bao, J.10
Zhang, B.11
Shi, Y.12
Yan, J.13
Gao, G.F.14
-
22
-
-
38349089634
-
Amino acid substitutions in the S2 subunit of mouse hepatitis virus variant V51 encode determinants of host range expansion
-
McRoy WC, Baric RS. 2008. Amino acid substitutions in the S2 subunit of mouse hepatitis virus variant V51 encode determinants of host range expansion. J. Virol. 82:1414-1424. http://dx.doi.org/10.1128/JVI.01674-07.
-
(2008)
J. Virol.
, vol.82
, pp. 1414-1424
-
-
McRoy, W.C.1
Baric, R.S.2
-
23
-
-
20844452721
-
Receptor and viral determinants of SARS-coronavirus adaptation to human ACE2
-
Li W, Zhang C, Sui J, Kuhn JH, Moore MJ, Luo S, Wong SK, Huang IC, Xu K, Vasilieva N, Murakami A, He Y, Marasco WA, Guan Y, Choe H, Farzan M. 2005. Receptor and viral determinants of SARS-coronavirus adaptation to human ACE2. EMBO J. 24:1634-1643. http://dx.doi.org/ 10.1038/sj.emboj.7600640.
-
(2005)
EMBO J.
, vol.24
, pp. 1634-1643
-
-
Li, W.1
Zhang, C.2
Sui, J.3
Kuhn, J.H.4
Moore, M.J.5
Luo, S.6
Wong, S.K.7
Huang, I.C.8
Xu, K.9
Vasilieva, N.10
Murakami, A.11
He, Y.12
Marasco, W.A.13
Guan, Y.14
Choe, H.15
Farzan, M.16
-
24
-
-
39749177748
-
Mechanisms of zoonotic severe acute respiratory syndrome coronavirus host range expansion in human airway epithelium
-
Sheahan T, Rockx B, Donaldson E, Sims A, Pickles R, Corti D, Baric R. 2008. Mechanisms of zoonotic severe acute respiratory syndrome coronavirus host range expansion in human airway epithelium. J. Virol. 82: 2274-2285. http://dx.doi.org/10.1128/JVI.02041-07.
-
(2008)
J. Virol.
, vol.82
, pp. 2274-2285
-
-
Sheahan, T.1
Rockx, B.2
Donaldson, E.3
Sims, A.4
Pickles, R.5
Corti, D.6
Baric, R.7
-
25
-
-
77949405054
-
Recombination, reservoirs, and the modular spike: Mechanisms of coronavirus cross-species transmission
-
Graham RL, Baric RS. 2010. Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission. J. Virol. 84: 3134-3146. http://dx.doi.org/10.1128/JVI.01394-09.
-
(2010)
J. Virol.
, vol.84
, pp. 3134-3146
-
-
Graham, R.L.1
Baric, R.S.2
-
26
-
-
67449088510
-
Severe acute respiratory syndrome coronavirus papain-like protease ubiquitinlike domain and catalytic domain regulate antagonism of IRF3 and NFkappaB signaling
-
Frieman M, Ratia K, Johnston RE, Mesecar AD, Baric RS. 2009. Severe acute respiratory syndrome coronavirus papain-like protease ubiquitinlike domain and catalytic domain regulate antagonism of IRF3 and NFkappaB signaling. J. Virol. 83:6689-6705. http://dx.doi.org/10.1128/ JVI.02220-08.
-
(2009)
J. Virol.
, vol.83
, pp. 6689-6705
-
-
Frieman, M.1
Ratia, K.2
Johnston, R.E.3
Mesecar, A.D.4
Baric, R.S.5
-
27
-
-
36148979683
-
Regulation of IRF-3-dependent innate immunity by the papain-like protease domain of the severe acute respiratory syndrome coronavirus
-
Devaraj SG, Wang N, Chen Z, Tseng M, Barretto N, Lin R, Peters CJ, Tseng CT, Baker SC, Li K. 2007. Regulation of IRF-3-dependent innate immunity by the papain-like protease domain of the severe acute respiratory syndrome coronavirus. J. Biol. Chem. 282:32208-32221. http:// dx.doi.org/10.1074/jbc.M704870200.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 32208-32221
-
-
Devaraj, S.G.1
Wang, N.2
Chen, Z.3
Tseng, M.4
Barretto, N.5
Lin, R.6
Peters, C.J.7
Tseng, C.T.8
Baker, S.C.9
Li, K.10
-
28
-
-
84895433273
-
-
ProMED-Mail, archive no. 20131112.2051424. International Society for Infectious Diseases, Brookline, MA
-
Memish Z. 2013. MERS-COV-Eastern Mediterranean (85): animal reservoir, camel, suspected, official. ProMED-Mail, archive no. 20131112.2051424. International Society for Infectious Diseases, Brookline, MA. http://www.promedmail.org/direct.php?id_2051424.
-
(2013)
MERS-COV-Eastern Mediterranean (85): Animal reservoir, camel, suspected, official
-
-
Memish, Z.1
-
29
-
-
67349158649
-
Coronaviruses post-SARS: Update on replication and pathogenesis
-
Perlman S, Netland J. 2009. Coronaviruses post-SARS: update on replication and pathogenesis. Nat. Rev. Microbiol. 7:439-450. http:// dx.doi.org/10.1038/nrmicro2147.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 439-450
-
-
Perlman, S.1
Netland, J.2
-
30
-
-
84873456999
-
Viral population analysis and minority-variant detection using short read next-generation sequencing
-
Watson SJ, Welkers MR, Depledge DP, Coulter E, Breuer JM, de Jong MD, Kellam P. 2013. Viral population analysis and minority-variant detection using short read next-generation sequencing. Philos. Trans. R. Soc. Lond. B Biol. Sci. 368:20120205. http://dx.doi.org/10.1098/ rstb.2012.0205.
-
(2013)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.368
, pp. 20120205
-
-
Watson, S.J.1
Welkers, M.R.2
Depledge, D.P.3
Coulter, E.4
Breuer, J.M.5
de Jong, M.D.6
Kellam, P.7
-
31
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to singlecell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to singlecell sequencing. J. Comput. Biol. 19:455-477. http://dx.doi.org/10.1089/ cmb.2012.0021.
-
(2012)
J. Comput. Biol.
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
32
-
-
84903363686
-
-
Wellcome Trust Sanger Institute, Hinxton, United Kingdom. Current version-SMALT v0.7.5. Released 16th July 2013
-
Ponstingl H. 2013. SMALT efficiently aligns DNA sequencing reads with a reference genome. Wellcome Trust Sanger Institute, Hinxton, United Kingdom. Current version-SMALT v0.7.5. Released 16th July 2013. http: //www.sanger.ac.uk/resources/software/smalt/.
-
(2013)
SMALT efficiently aligns DNA sequencing reads with a reference genome
-
-
Ponstingl, H.1
-
33
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. http:// dx.doi.org/10.1186/1471-2105-5-113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
34
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
35
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755. http://dx.doi.org/10.1093/ bioinformatics/17.8.754.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
36
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29:-1969-1973. http://dx.doi.org/10.1093/molbev/mss075.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
37
-
-
84873403934
-
Reconstructing the initial global spread of a human influenza pandemic
-
Lemey P, Suchard M, Rambaut A. 2009. Reconstructing the initial global spread of a human influenza pandemic. PLoS Curr. Influenza 1:RRN1031. http://dx.doi.org/10.1371/currents.RRN1031.
-
(2009)
PLoS Curr. Influenza
, vol.1
-
-
Lemey, P.1
Suchard, M.2
Rambaut, A.3
-
38
-
-
84865475040
-
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
-
Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. 2012. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol. Biol. Evol. 29:2157-2167. http://dx.doi.org/10.1093/molbev/mss084.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 2157-2167
-
-
Baele, G.1
Lemey, P.2
Bedford, T.3
Rambaut, A.4
Suchard, M.A.5
Alekseyenko, A.V.6
-
39
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
Pond SL, Frost SD, Muse SV. 2005. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676-679. http://dx.doi.org/10.1093/ bioinformatics/bti079.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
40
-
-
84864605220
-
Detecting individual sites subject to episodic diversifying selection
-
Murrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL. 2012. Detecting individual sites subject to episodic diversifying selection. PLoS Genet. 8:e1002764. http://dx.doi.org/10.1371/ journal.pgen.1002764.
-
(2012)
PLoS Genet.
, vol.8
-
-
Murrell, B.1
Wertheim, J.O.2
Moola, S.3
Weighill, T.4
Scheffler, K.5
Kosakovsky Pond, S.L.6
-
41
-
-
84876522258
-
FUBAR: A fast, unconstrained Bayesian approximation for inferring selection
-
Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K. 2013. FUBAR: a fast, unconstrained Bayesian approximation for inferring selection. Mol. Biol. Evol. 30:1196-1205. http:// dx.doi.org/10.1093/molbev/mst030.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1196-1205
-
-
Murrell, B.1
Moola, S.2
Mabona, A.3
Weighill, T.4
Sheward, D.5
Kosakovsky Pond, S.L.6
Scheffler, K.7
-
42
-
-
0042208243
-
The coronavirus spike protein is a class I virus fusion protein: Structural and functional characterization of the fusion core complex
-
Bosch BJ, van der Zee R, de Haan CA, Rottier PJ. 2003. The coronavirus spike protein is a class I virus fusion protein: structural and functional characterization of the fusion core complex. J. Virol. 77:8801-8811. http://dx.doi.org/10.1128/JVI.77.16.8801-8811.2003.
-
(2003)
J. Virol.
, vol.77
, pp. 8801-8811
-
-
Bosch, B.J.1
van der Zee, R.2
de Haan, C.A.3
Rottier, P.J.4
-
43
-
-
84869853105
-
Ezrin interacts with the SARS coronavirus spike protein and restrains infection at the entry stage
-
Millet JK, Kien F, Cheung CY, Siu YL, Chan WL, Li H, Leung HL, Jaume M, Bruzzone R, Peiris JS, Altmeyer RM, Nal B. 2012. Ezrin interacts with the SARS coronavirus spike protein and restrains infection at the entry stage. PLoS One 7:e49566. http://dx.doi.org/10.1371/ journal.pone.0049566.
-
(2012)
PLoS One
, vol.7
-
-
Millet, J.K.1
Kien, F.2
Cheung, C.Y.3
Siu, Y.L.4
Chan, W.L.5
Li, H.6
Leung, H.L.7
Jaume, M.8
Bruzzone, R.9
Peiris, J.S.10
Altmeyer, R.M.11
Nal, B.12
-
44
-
-
84881190964
-
Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4
-
Wang N, Shi X, Jiang L, Zhang S, Wang D, Tong P, Guo D, Fu L, Cui Y, Liu X, Arledge KC, Chen YH, Zhang L, Wang X. 2013. Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4. Cell Res. 23:986-993. http://dx.doi.org/10.1038/ cr.2013.92.
-
(2013)
Cell Res.
, vol.23
, pp. 986-993
-
-
Wang, N.1
Shi, X.2
Jiang, L.3
Zhang, S.4
Wang, D.5
Tong, P.6
Guo, D.7
Fu, L.8
Cui, Y.9
Liu, X.10
Arledge, K.C.11
Chen, Y.H.12
Zhang, L.13
Wang, X.14
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