-
1
-
-
84887978644
-
Surface water quality is improving due to declining atmospheric N deposition
-
Eshleman KN, Sabo RD, Kline KM. 2013. Surface water quality is improving due to declining atmospheric N deposition. Environ. Sci. Technol. 47:12193-12200. http://dx.doi.org/10.1021/es4028748.
-
(2013)
Environ. Sci. Technol.
, vol.47
, pp. 12193-12200
-
-
Eshleman, K.N.1
Sabo, R.D.2
Kline, K.M.3
-
2
-
-
84892646050
-
Nitrogen cycles: past, present, and future
-
Galloway JN, Dentener FJ, Capone DG, Boyer EW, Howarth RW, Seitzinger SP, Asner GP, Cleveland CC, Green PA, Holland EA, Karl DM, Michaels AF, Porter JH, Townsend AR, Vöosmarty CJ. 2004. Nitrogen cycles: past, present, and future. Biogeochemistry 70:153-226. http://dx.doi.org/10.1007/s10533-004-0370-0.
-
(2004)
Biogeochemistry
, vol.70
, pp. 153-226
-
-
Galloway, J.N.1
Dentener, F.J.2
Capone, D.G.3
Boyer, E.W.4
Howarth, R.W.5
Seitzinger, S.P.6
Asner, G.P.7
Cleveland, C.C.8
Green, P.A.9
Holland, E.A.10
Karl, D.M.11
Michaels, A.F.12
Porter, J.H.13
Townsend, A.R.14
Vöosmarty, C.J.15
-
3
-
-
84863206199
-
Introduction to the european monitoring and evaluation programme (emep) and observed atmospheric composition change during 1972-2009
-
Torseth K, Aas W, Breivik K, Fjaeraa AM, Fiebig M, Hjellbrekke AG, Myhre CL, Solberg S, Yttri KE. 2012. Introduction to the european monitoring and evaluation programme (emep) and observed atmospheric composition change during 1972-2009. Atmos. Chem. Phys. 12: 5447-5481. http://dx.doi.org/10.5194/acp-12-5447-2012.
-
(2012)
Atmos. Chem. Phys.
, vol.12
, pp. 5447-5481
-
-
Torseth, K.1
Aas, W.2
Breivik, K.3
Fjaeraa, A.M.4
Fiebig, M.5
Hjellbrekke, A.G.6
Myhre, C.L.7
Solberg, S.8
Yttri, K.E.9
-
4
-
-
77954636789
-
A global perspective on belowground carbon dynamics under nitrogen enrichment
-
Liu LL, Greaver TL. 2010. A global perspective on belowground carbon dynamics under nitrogen enrichment. Ecol. Lett. 13:819-828. http://dx.doi.org/10.1111/j.1461-0248.2010.01482.x.
-
(2010)
Ecol. Lett.
, vol.13
, pp. 819-828
-
-
Liu, L.L.1
Greaver, T.L.2
-
5
-
-
60349111840
-
Global nitrogen deposition and carbon sinks
-
Reay DS, Dentener F, Smith P, Grace J, Feely RA. 2008. Global nitrogen deposition and carbon sinks. Nat. Geosci. 1:430-437. http://dx.doi.org /10.1038/ngeo230.
-
(2008)
Nat. Geosci.
, vol.1
, pp. 430-437
-
-
Reay, D.S.1
Dentener, F.2
Smith, P.3
Grace, J.4
Feely, R.A.5
-
7
-
-
77954600237
-
Simulated atmospheric nitrogen deposition alters actinobacterial community composition in forest soils
-
Eisenlord SD, Zak DR. 2010. Simulated atmospheric nitrogen deposition alters actinobacterial community composition in forest soils. Soil Biol. Biochem. 74:1157-1166. http://dx.doi.org/10.2136/sssaj2009.0240.
-
(2010)
Soil Biol. Biochem.
, vol.74
, pp. 1157-1166
-
-
Eisenlord, S.D.1
Zak, D.R.2
-
9
-
-
36849002455
-
Simulated chronic nitrogen deposition increases carbon storage in northern temperate forests
-
Pregitzer KS, Burton AJ, Zak DR, Talhelm AF. 2008. Simulated chronic nitrogen deposition increases carbon storage in northern temperate forests. Glob. Chang. Biol. 14:142-153. http://dx.doi.org/10.1111/j.1365-2486.2007.01465.x.
-
(2008)
Glob. Chang. Biol.
, vol.14
, pp. 142-153
-
-
Pregitzer, K.S.1
Burton, A.J.2
Zak, D.R.3
Talhelm, A.F.4
-
10
-
-
3242741384
-
Chronic nitrate additions dramatically increase the export of carbon and nitrogen from northern hardwood ecosystems
-
Pregitzer KS, Zak DR, Burton AJ, Ashby JA, MacDonald NW. 2004. Chronic nitrate additions dramatically increase the export of carbon and nitrogen from northern hardwood ecosystems. Biogeochemistry 68:179-197. http://dx.doi.org/10.1023/B:BIOG.0000025737.29546.fd.
-
(2004)
Biogeochemistry
, vol.68
, pp. 179-197
-
-
Pregitzer, K.S.1
Zak, D.R.2
Burton, A.J.3
Ashby, J.A.4
MacDonald, N.W.5
-
13
-
-
84858867071
-
Anthropogenic N deposition increases soil C storage by decreasing the extent of litter decay: analysis of field observations with an ecosystem model
-
Whittinghill KA, Currie WS, Zak DR, Burton AJ, Pregitzer KS. 2012. Anthropogenic N deposition increases soil C storage by decreasing the extent of litter decay: analysis of field observations with an ecosystem model. Ecosystems 15:450-461. http://dx.doi.org/10.1007/s10021-012-9521-7.
-
(2012)
Ecosystems
, vol.15
, pp. 450-461
-
-
Whittinghill, K.A.1
Currie, W.S.2
Zak, D.R.3
Burton, A.J.4
Pregitzer, K.S.5
-
15
-
-
77952368547
-
Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders
-
Ahmad M, Taylor CR, Pink D, Burton K, Eastwood D, Bending GD, Bugg TDH. 2010. Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders. Mol. Biosyst. 6:815-821. http://dx.doi.org/10.1039/b908966g.
-
(2010)
Mol. Biosyst.
, vol.6
, pp. 815-821
-
-
Ahmad, M.1
Taylor, C.R.2
Pink, D.3
Burton, K.4
Eastwood, D.5
Bending, G.D.6
Bugg, T.D.H.7
-
16
-
-
0037632906
-
Enzymological characterization of EpoA, a laccase-like phenol oxidase produced by Streptomyces griseus
-
Endo K, Hayashi Y, Hibi T, Hosono K, Beppu T, Ueda K. 2003. Enzymological characterization of EpoA, a laccase-like phenol oxidase produced by Streptomyces griseus. J. Biochem. 133:671-677. http://dx.doi.org/10.1093/jb/mvg086.
-
(2003)
J. Biochem.
, vol.133
, pp. 671-677
-
-
Endo, K.1
Hayashi, Y.2
Hibi, T.3
Hosono, K.4
Beppu, T.5
Ueda, K.6
-
17
-
-
29244488552
-
A hyperthermophilic laccase from Thermus thermophilus HB27
-
Miyazaki K. 2005. A hyperthermophilic laccase from Thermus thermophilus HB27. Extremophiles 9:415-425. http://dx.doi.org/10.1007/s00792-005-0458-z.
-
(2005)
Extremophiles
, vol.9
, pp. 415-425
-
-
Miyazaki, K.1
-
18
-
-
42549099032
-
Cloning and characterization of a new laccase from Bacillus licheniformis catalyzing dimerization of phenolic acids
-
Koschorreck K, Richter SM, Ene AB, Roduner E, Schmid RD, Urlacher VB. 2008. Cloning and characterization of a new laccase from Bacillus licheniformis catalyzing dimerization of phenolic acids. Appl. Microbiol. Biotechnol. 79:217-224. http://dx.doi.org/10.1007/s00253-008-1417-2.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.79
, pp. 217-224
-
-
Koschorreck, K.1
Richter, S.M.2
Ene, A.B.3
Roduner, E.4
Schmid, R.D.5
Urlacher, V.B.6
-
19
-
-
0037166265
-
Molecular and biochemical characterization of a highly stable bacterial laccase that occurs as a structural component of the Bacillus subtilis endospore coat
-
Martins LO, Soares CM, Pereira MM, Teixeira M, Costa T, Jones GH, Henriques AO. 2002. Molecular and biochemical characterization of a highly stable bacterial laccase that occurs as a structural component of the Bacillus subtilis endospore coat. J. Biol. Chem. 277:18849-18859. http: //dx.doi.org/10.1074/jbc.M200827200.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 18849-18859
-
-
Martins, L.O.1
Soares, C.M.2
Pereira, M.M.3
Teixeira, M.4
Costa, T.5
Jones, G.H.6
Henriques, A.O.7
-
20
-
-
0041856135
-
A labile regulatory copper ion lies near the T1 copper site in the multicopper oxidase CueO
-
Roberts SA, Wildner GF, Grass G, Weichsel A, Ambrus A, Rensing C, Montfort WR. 2003. A labile regulatory copper ion lies near the T1 copper site in the multicopper oxidase CueO. J. Biol. Chem. 278:31958-31963. http://dx.doi.org/10.1074/jbc.M302963200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 31958-31963
-
-
Roberts, S.A.1
Wildner, G.F.2
Grass, G.3
Weichsel, A.4
Ambrus, A.5
Rensing, C.6
Montfort, W.R.7
-
21
-
-
0035810685
-
Molecular cloning and functional characterization of a unique multipotent polyphenol oxidase from Marinomonas mediterranea
-
Sanchez-Amat A, Lucas-Elío P, Fernández E, García-Borrón JC, Solano F. 2001. Molecular cloning and functional characterization of a unique multipotent polyphenol oxidase from Marinomonas mediterranea. Biochim. Biophys. Acta 1547:104-116. http://dx.doi.org/10.1016/S0167-4838(01)00174-1.
-
(2001)
Biochim. Biophys. Acta
, vol.1547
, pp. 104-116
-
-
Sanchez-Amat, A.1
Lucas-Elío, P.2
Fernández, E.3
García-Borrón, J.C.4
Solano, F.5
-
22
-
-
37449035008
-
Diversity of bacterial laccase-like multicopper oxidase genes in forest and grassland cambisol soil samples
-
Kellner H, Luis P, Zimdars B, Kiesel B, Busco F. 2008. Diversity of bacterial laccase-like multicopper oxidase genes in forest and grassland cambisol soil samples. Soil Biol. Biochem. 40:638-648. http://dx.doi.org /10.1016/j.soilbio.2007.09.013.
-
(2008)
Soil Biol. Biochem.
, vol.40
, pp. 638-648
-
-
Kellner, H.1
Luis, P.2
Zimdars, B.3
Kiesel, B.4
Busco, F.5
-
23
-
-
79952446040
-
Two-and three-domain bacterial laccase-like genes are present in drained peat soils
-
Ausec L, van Elsas JD, Mandic-Mulec I. 2011. Two-and three-domain bacterial laccase-like genes are present in drained peat soils. Soil Biol. Biochem. 43:975-983. http://dx.doi.org/10.1016/j.soilbio.2011.01.013.
-
(2011)
Soil Biol. Biochem.
, vol.43
, pp. 975-983
-
-
Ausec, L.1
van Elsas, J.D.2
Mandic-Mulec, I.3
-
24
-
-
0033669606
-
Interactions between litter lignin and soil nitrogen availability during leaf litter decomposition in a Hawaiian montane forest
-
Hobbie SE. 2000. Interactions between litter lignin and soil nitrogen availability during leaf litter decomposition in a Hawaiian montane forest. Ecosystems 3:484-494. http://dx.doi.org/10.1007/s100210000042.
-
(2000)
Ecosystems
, vol.3
, pp. 484-494
-
-
Hobbie, S.E.1
-
25
-
-
84860236345
-
Interactions among lignin, cellulose, and nitrogen drive litter chemistry-decay relationships
-
Talbot JM, Treseder KK. 2012. Interactions among lignin, cellulose, and nitrogen drive litter chemistry-decay relationships. Ecology 93:345-354. http://dx.doi.org/10.1890/11-0843.1.
-
(2012)
Ecology
, vol.93
, pp. 345-354
-
-
Talbot, J.M.1
Treseder, K.K.2
-
26
-
-
0032731666
-
Lignin-modifying enzymes of the white rot basidiomycete Ganoderma lucidum
-
D'Souza TM, Merritt CS, Reddy CA. 1999. Lignin-modifying enzymes of the white rot basidiomycete Ganoderma lucidum. Appl. Environ. Microbiol. 65:5307-5313.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5307-5313
-
-
D'Souza, T.M.1
Merritt, C.S.2
Reddy, C.A.3
-
27
-
-
77956207198
-
Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil
-
e10971
-
Kellner H, Zak DR, Vandenbol M. 2010. Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil. PLoS One 5:e10971. http://dx.doi.org/10.1371/journal.pone.0010971.
-
(2010)
PLoS One
, vol.5
-
-
Kellner, H.1
Zak, D.R.2
Vandenbol, M.3
-
28
-
-
0023478845
-
Enzymatic "combustion": the microbial degradation of lignin
-
Kirk TK, Farrell RL. 1987. Enzymatic "combustion": the microbial degradation of lignin. Annu. Rev. Microbiol. 41:465-505. http://dx.doi.org /10.1146/annurev.mi.41.100187.002341.
-
(1987)
Annu. Rev. Microbiol.
, vol.41
, pp. 465-505
-
-
Kirk, T.K.1
Farrell, R.L.2
-
29
-
-
84892329353
-
-
Springer, Dordrecht, The Netherlands
-
Polaina J, MacCabe AP. 2007. Industrial enzymes: structure, function, and applications. Springer, Dordrecht, The Netherlands.
-
(2007)
Industrial enzymes: structure, function, and applications
-
-
Polaina, J.1
MacCabe, A.P.2
-
30
-
-
81355123362
-
Pathways for degradation of lignin in bacteria and fungi
-
Bugg TDH, Ahmad M, Hardiman EM, Rahmanpour R. 2011. Pathways for degradation of lignin in bacteria and fungi. Nat. Prod. Rep. 28:1883-1896. http://dx.doi.org/10.1039/c1np00042j.
-
(2011)
Nat. Prod. Rep.
, vol.28
, pp. 1883-1896
-
-
Bugg, T.D.H.1
Ahmad, M.2
Hardiman, E.M.3
Rahmanpour, R.4
-
31
-
-
0026483373
-
Towards elucidation of the lignin degradation pathway in actinomycetes
-
Godden B, Ball AS, Helvenstein P, Mccarthy AJ, Penninckx MJ. 1992. Towards elucidation of the lignin degradation pathway in actinomycetes. J. Gen. Microbiol. 138:2441-2448. http://dx.doi.org/10.1099/00221287-138-11-2441.
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 2441-2448
-
-
Godden, B.1
Ball, A.S.2
Helvenstein, P.3
Mccarthy, A.J.4
Penninckx, M.J.5
-
32
-
-
79959305327
-
Simulated atmospheric N deposition alters fungal community composition and suppresses ligninolytic gene expression in a northern hardwood forest
-
e20421
-
Edwards IP, Zak DR, Kellner H, Eisenlord SD, Pregitzer KS. 2011. Simulated atmospheric N deposition alters fungal community composition and suppresses ligninolytic gene expression in a northern hardwood forest. PLoS One 6:e20421. http://dx.doi.org/10.1371/journal.pone.0020421.
-
(2011)
PLoS One
, vol.6
-
-
Edwards, I.P.1
Zak, D.R.2
Kellner, H.3
Eisenlord, S.D.4
Pregitzer, K.S.5
-
33
-
-
84874748579
-
Microbial mechanisms mediating increased soil C storage under elevated atmosphericNdeposition
-
Eisenlord SD, Freedman Z, Zak DR, Xue K, He ZL, Zhou JZ. 2013. Microbial mechanisms mediating increased soil C storage under elevated atmosphericNdeposition. Appl. Environ. Microbiol. 79:1191-1199. http: //dx.doi.org/10.1128/AEM.03156-12.
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 1191-1199
-
-
Eisenlord, S.D.1
Freedman, Z.2
Zak, D.R.3
Xue, K.4
He, Z.L.5
Zhou, J.Z.6
-
34
-
-
0001857117
-
16s/23s rRNA sequencing
-
Stackebrandt E, Goodfellow M (ed). John Wiley & Sons, Chichester, United Kingdom.
-
Lane DJ. 1991. 16s/23s rRNA sequencing, p 115-175. In Stackebrandt E, GoodfellowM(ed), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-175
-
-
Lane, D.J.1
-
35
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
36
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
-
Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol. Ecol. 2:113-118. http://dx.doi.org/10.1111/j.1365-294X.1993.tb00005.x.
-
(1993)
Mol. Ecol.
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
37
-
-
0025374564
-
Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species
-
Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J. Bacteriol. 172:4238-4246.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 4238-4246
-
-
Vilgalys, R.1
Hester, M.2
-
38
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, deWinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, et al. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323:133-138. http: //dx.doi.org/10.1126/science.1162986.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
Rank, D.8
Baybayan, P.9
Bettman, B.10
Bibillo, A.11
Bjornson, K.12
Chaudhuri, B.13
Christians, F.14
Cicero, R.15
Clark, S.16
Dalal, R.17
deWinter, A.18
Dixon, J.19
Foquet, M.20
Gaertner, A.21
Hardenbol, P.22
Heiner, C.23
Hester, K.24
Holden, D.25
Kearns, G.26
Kong, X.27
Kuse, R.28
Lacroix, Y.29
Lin, S.30
Lundquist, P.31
Ma, C.32
Marks, P.33
Maxham, M.34
Murphy, D.35
Park, I.36
Pham, T.37
Phillips, M.38
Roy, J.39
Sebra, R.40
Shen, G.41
Sorenson, J.42
Tomaney, A.43
Travers, K.44
Trulson, M.45
Vieceli, J.46
Wegener, J.47
Wu, D.48
Yang, A.49
Zaccarin, D.50
more..
-
39
-
-
77956125365
-
A flexible and efficient template format for circular consensus sequencing and SNP detection
-
22 June
-
Travers KJ, Chin CS, Rank DR, Eid JS, Turner SW. 22 June 2010. A flexible and efficient template format for circular consensus sequencing and SNP detection. Nucleic Acids Res. http://dx.doi.org/10.1093/nar /gkq543.
-
(2010)
Nucleic Acids Res
-
-
Travers, K.J.1
Chin, C.S.2
Rank, D.R.3
Eid, J.S.4
Turner, S.W.5
-
40
-
-
84878631963
-
Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform
-
Fichot EB, Norman RS. 2013. Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform. Microbiome 1:10. http://dx.doi.org/10.1186/2049-2618-1-10.
-
(2013)
Microbiome
, vol.1
, pp. 10
-
-
Fichot, E.B.1
Norman, R.S.2
-
41
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541. http://dx.doi.org/10.1128/AEM.01541-09.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
42
-
-
84870769198
-
Electrosynthesis of commodity chemicals by an autotrophic microbial community
-
Marshall CW, Ross DE, Fichot EB, Norman RS, May HD. 2012. Electrosynthesis of commodity chemicals by an autotrophic microbial community. Appl. Environ. Microbiol. 78:8412-8420. http://dx.doi.org /10.1128/AEM.02401-12.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 8412-8420
-
-
Marshall, C.W.1
Ross, D.E.2
Fichot, E.B.3
Norman, R.S.4
May, H.D.5
-
43
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41: D590-D596. http://dx.doi.org/10.1093/nar/gks1219.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glockner, F.O.8
-
44
-
-
0014757386
-
A general method applicable to search for similarities in amino acid sequence of two proteins
-
Needleman SB, Wunsch CD. 1970. A general method applicable to search for similarities in amino acid sequence of two proteins. J. Mol. Biol. 48: 443-453. http://dx.doi.org/10.1016/0022-2836(70)90057-4.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
45
-
-
79961181125
-
Uchime improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. Uchime improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200. http://dx.doi.org/10.1093/bioinformatics/btr381.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
46
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
11 October
-
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li WZ, Lopez R, McWilliam H, Remmert M, Soding J, Thompson JD, Higgins DG. 11 October 2011. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. http://dx.doi.org/10.1038/msb.2011.75.
-
(2011)
Mol. Syst. Biol
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.Z.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Soding, J.10
Thompson, J.D.11
Higgins, D.G.12
-
47
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267. http://dx.doi.org/10.1128/AEM.00062-07.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
49
-
-
0001463548
-
Nonparametric-estimation of the number of classes in a population
-
Chao A. 1984. Nonparametric-estimation of the number of classes in a population. Scand. J. Stat. 11:265-270.
-
(1984)
Scand. J. Stat.
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
51
-
-
29144464937
-
Unifrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R. 2005. Unifrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71:8228-8235. http://dx.doi.org/10.1128/AEM.71.12.8228-8235.2005.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
52
-
-
0027806622
-
A method of linking multivariate community structure to environmental variables
-
Clarke KR, Warwick RM, Brown BE. 1993. A method of linking multivariate community structure to environmental variables. Mar. Ecol. Prog. Ser. 92:205-219. http://dx.doi.org/10.3354/meps092205.
-
(1993)
Mar. Ecol. Prog. Ser.
, vol.92
, pp. 205-219
-
-
Clarke, K.R.1
Warwick, R.M.2
Brown, B.E.3
-
53
-
-
67649327176
-
Fasttree: computing large minimum evolution trees with profiles instead of a distance matrix
-
Price MN, Dehal PS, Arkin AP. 2009. Fasttree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26:1641-1650. http://dx.doi.org/10.1093/molbev/msp077.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
54
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson MJ. 2001. A new method for non-parametric multivariate analysis of variance. Aust. Ecol. 26:32-46.
-
(2001)
Aust. Ecol.
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
55
-
-
0033863379
-
Microbial enzyme shifts explain litter decay responses to simulated nitrogen deposition
-
Carreiro MM, Sinsabaugh RL, Repert DA, Parkhurst DF. 2000. Microbial enzyme shifts explain litter decay responses to simulated nitrogen deposition. Ecology 81:2359-2365. http://dx.doi.org/10.1890/0012-9658 (2000)081[2359:MESELD]2.0.CO;2.
-
(2000)
Ecology
, vol.81
, pp. 2359-2365
-
-
Carreiro, M.M.1
Sinsabaugh, R.L.2
Repert, D.A.3
Parkhurst, D.F.4
-
56
-
-
77954083488
-
Bacteria and lignin degradation
-
Li J, Yuan H, Yang J. 2009. Bacteria and lignin degradation. Front. Biol. 4:29-38. http://dx.doi.org/10.1007/s11515-008-0097-8.
-
(2009)
Front. Biol.
, vol.4
, pp. 29-38
-
-
Li, J.1
Yuan, H.2
Yang, J.3
-
57
-
-
36148980100
-
Ecology of ligninolytic fungi associated with leaf litter decomposition
-
Osono T. 2007. Ecology of ligninolytic fungi associated with leaf litter decomposition. Ecol. Res. 22:955-974. http://dx.doi.org/10.1007/s11284-007-0390-z.
-
(2007)
Ecol. Res.
, vol.22
, pp. 955-974
-
-
Osono, T.1
-
58
-
-
22744458423
-
Atmospheric nitrate deposition and enhanced dissolved organic carbon leaching: test of a potential mechanism
-
DeForest JL, Zak DR, Pregitzer KS, Burton AJ. 2005. Atmospheric nitrate deposition and enhanced dissolved organic carbon leaching: test of a potential mechanism. Soil Sci. Soc. Am. J. 69:1233-1237. http://dx.doi.org/10.2136/sssaj2004.0283.
-
(2005)
Soil Sci. Soc. Am. J.
, vol.69
, pp. 1233-1237
-
-
DeForest, J.L.1
Zak, D.R.2
Pregitzer, K.S.3
Burton, A.J.4
-
59
-
-
0347300713
-
Atmospheric nitrate deposition, microbial community composition, and enzyme activity in northern hardwood forests
-
DeForest JL, Zak DR, Pregitzer KS, Burton AJ. 2004. Atmospheric nitrate deposition, microbial community composition, and enzyme activity in northern hardwood forests. Soil Sci. Soc. Am. J. 68:132-138. http: //dx.doi.org/10.2136/sssaj2004.1320.
-
(2004)
Soil Sci. Soc. Am. J.
, vol.68
, pp. 132-138
-
-
DeForest, J.L.1
Zak, D.R.2
Pregitzer, K.S.3
Burton, A.J.4
-
60
-
-
3242811946
-
Nitrogen deposition modifies soil carbon storage through changes in microbial enzymatic activity
-
Waldrop MP, Zak DR, Sinsabaugh RL, Gallo M, Lauber C. 2004. Nitrogen deposition modifies soil carbon storage through changes in microbial enzymatic activity. Ecol. Appl. 14:1172-1177. http://dx.doi.org/10.1890/03-5120.
-
(2004)
Ecol. Appl.
, vol.14
, pp. 1172-1177
-
-
Waldrop, M.P.1
Zak, D.R.2
Sinsabaugh, R.L.3
Gallo, M.4
Lauber, C.5
-
61
-
-
3042728579
-
Chronic nitrogen enrichment affects the structure and function of the soil microbial community in temperate hardwood and pine forests
-
Frey SD, Knorr M, Parrent JL, Simpson RT. 2004. Chronic nitrogen enrichment affects the structure and function of the soil microbial community in temperate hardwood and pine forests. For. Ecol. Manage. 196: 159-171. http://dx.doi.org/10.1016/j.foreco.2004.03.018.
-
(2004)
For. Ecol. Manage.
, vol.196
, pp. 159-171
-
-
Frey, S.D.1
Knorr, M.2
Parrent, J.L.3
Simpson, R.T.4
-
63
-
-
78049437553
-
The effect of nutrient deposition on bacterial communities in Arctic tundra soil
-
Campbell BJ, Polson SW, Hanson TE, Mack MC, Schuur EA. 2010. The effect of nutrient deposition on bacterial communities in Arctic tundra soil. Environ. Microbiol. 12:1842-1854. http://dx.doi.org/10.1111/j.1462-2920.2010.02189.x.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1842-1854
-
-
Campbell, B.J.1
Polson, S.W.2
Hanson, T.E.3
Mack, M.C.4
Schuur, E.A.5
-
64
-
-
84859911168
-
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
-
Fierer N, Lauber CL, Ramirez KS, Zaneveld J, Bradford MA, Knight R. 2012. Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients. ISME J. 6:1007-1017. http://dx.doi.org/10.1038/ismej.2011.159.
-
(2012)
ISME J.
, vol.6
, pp. 1007-1017
-
-
Fierer, N.1
Lauber, C.L.2
Ramirez, K.S.3
Zaneveld, J.4
Bradford, M.A.5
Knight, R.6
-
65
-
-
52949144888
-
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling
-
Nemergut DR, Townsend AR, Sattin SR, Freeman KR, Fierer N, Neff JC, Bowman WD, Schadt CW, Weintraub MN, Schmidt SK. 2008. The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environ. Microbiol. 10:3093-3105. http://dx.doi.org/10.1111/j.1462-2920.2008.01735.x.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 3093-3105
-
-
Nemergut, D.R.1
Townsend, A.R.2
Sattin, S.R.3
Freeman, K.R.4
Fierer, N.5
Neff, J.C.6
Bowman, W.D.7
Schadt, C.W.8
Weintraub, M.N.9
Schmidt, S.K.10
-
66
-
-
78650358038
-
Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems
-
Ramirez KS, Lauber CL, Knight R, Bradford MA, Fierer N. 2010. Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems. Ecology 91:3463-3470. http://dx.doi.org/10.1890/10-0426.1.
-
(2010)
Ecology
, vol.91
, pp. 3463-3470
-
-
Ramirez, K.S.1
Lauber, C.L.2
Knight, R.3
Bradford, M.A.4
Fierer, N.5
-
67
-
-
84860676038
-
Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes
-
Ramirez KS, Craine JM, Fierer N. 2012. Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes. Glob. Chang. Biol. 18:1918-1927. http://dx.doi.org/10.1111/j.1365-2486.2012.02639.x.
-
(2012)
Glob. Chang. Biol.
, vol.18
, pp. 1918-1927
-
-
Ramirez, K.S.1
Craine, J.M.2
Fierer, N.3
-
68
-
-
84884868588
-
Long-term experimental nitrogen deposition alters the composition of the active fungal community in the forest floor
-
Entwistle EM, Zak DR, Edwards IP. 2013. Long-term experimental nitrogen deposition alters the composition of the active fungal community in the forest floor. Soil Sci. Soc. Am. J. 77:1648-1658. http://dx.doi.org/10.2136/sssaj2013.05.0179.
-
(2013)
Soil Sci. Soc. Am. J.
, vol.77
, pp. 1648-1658
-
-
Entwistle, E.M.1
Zak, D.R.2
Edwards, I.P.3
-
69
-
-
34248584679
-
Nitrogen fertilization reduces diversity and alters community structure of active fungi in boreal ecosystems
-
Allison SD, Hanson CA, Treseder KK. 2007. Nitrogen fertilization reduces diversity and alters community structure of active fungi in boreal ecosystems. Soil Biol. Biochem. 39:1878-1887. http://dx.doi.org/10.1016 /j.soilbio.2007.02.001.
-
(2007)
Soil Biol. Biochem.
, vol.39
, pp. 1878-1887
-
-
Allison, S.D.1
Hanson, C.A.2
Treseder, K.K.3
-
70
-
-
84876111557
-
Microbial abundance and composition influence litter decomposition response to environmental change
-
Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB. 2013. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology 94:714-725. http://dx.doi.org/10.1890/12-1243.1.
-
(2013)
Ecology
, vol.94
, pp. 714-725
-
-
Allison, S.D.1
Lu, Y.2
Weihe, C.3
Goulden, M.L.4
Martiny, A.C.5
Treseder, K.K.6
Martiny, J.B.7
-
71
-
-
77954007713
-
Assembly history dictates ecosystem functioning: evidence from wood decomposer communities
-
Fukami T, Dickie IA, Wilkie JP, Paulus BC, Park D, Roberts A, Buchanan PK, Allen RB. 2010. Assembly history dictates ecosystem functioning: evidence from wood decomposer communities. Ecol. Lett. 13: 675-684. http://dx.doi.org/10.1111/j.1461-0248.2010.01465.x.
-
(2010)
Ecol. Lett.
, vol.13
, pp. 675-684
-
-
Fukami, T.1
Dickie, I.A.2
Wilkie, J.P.3
Paulus, B.C.4
Park, D.5
Roberts, A.6
Buchanan, P.K.7
Allen, R.B.8
-
72
-
-
84874218240
-
Dispersal limitation and the assembly of soil actinobacteria communities in a long-term chronosequence
-
Eisenlord SD, Zak DR, Upchurch RA. 2012. Dispersal limitation and the assembly of soil actinobacteria communities in a long-term chronosequence. Ecol. Evol. 2:538-549. http://dx.doi.org/10.1002/ece3.210.
-
(2012)
Ecol. Evol.
, vol.2
, pp. 538-549
-
-
Eisenlord, S.D.1
Zak, D.R.2
Upchurch, R.A.3
-
73
-
-
77951954643
-
Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions
-
Di HJ, Cameron KC, Shen JP, Winefield CS, O'Callaghan M, Bowatte S, He JZ. 2010. Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions. FEMS Microbiol. Ecol. 72:386-394. http://dx.doi.org/10.1111/j.1574-6941.2010.00861.x.
-
(2010)
FEMS Microbiol. Ecol.
, vol.72
, pp. 386-394
-
-
Di, H.J.1
Cameron, K.C.2
Shen, J.P.3
Winefield, C.S.4
O'Callaghan, M.5
Bowatte, S.6
He, J.Z.7
-
74
-
-
84882636804
-
Towards a molecular understanding of N cycling in northern hardwood forests under future rates of N deposition
-
Freedman Z, Eisenlord SD, Zak DR, Xue K, He Z, Zhou J. 2013. Towards a molecular understanding of N cycling in northern hardwood forests under future rates of N deposition. Soil Biol. Biochem. 66:130-138. http://dx.doi.org/10.1016/j.soilbio.2013.07.010.
-
(2013)
Soil Biol. Biochem.
, vol.66
, pp. 130-138
-
-
Freedman, Z.1
Eisenlord, S.D.2
Zak, D.R.3
Xue, K.4
He, Z.5
Zhou, J.6
-
75
-
-
0242554587
-
Bacterial-degradation of kraft lignin: production and characterization of water-soluble intermediates derived from Streptomyces badius and Streptomyces viridosporus
-
Vidal PF, Bouchard J, Overend RP, Chornet E, Giroux H, Lamy F. 1989. Bacterial-degradation of kraft lignin: production and characterization of water-soluble intermediates derived from Streptomyces badius and Streptomyces viridosporus. Plant Cell Wall Polym. 399:529-543. http://dx.doi.org/10.1021/bk-1989-0399.ch038.
-
(1989)
Plant Cell Wall Polym.
, vol.399
, pp. 529-543
-
-
Vidal, P.F.1
Bouchard, J.2
Overend, R.P.3
Chornet, E.4
Giroux, H.5
Lamy, F.6
-
76
-
-
0006881942
-
Decomposition of lignin by microorganisms
-
Waksman SA, Hutchings IJ. 1936. Decomposition of lignin by microorganisms. Soil Sci. 42:119-130. http://dx.doi.org/10.1097/00010694-193608000-00004.
-
(1936)
Soil Sci.
, vol.42
, pp. 119-130
-
-
Waksman, S.A.1
Hutchings, I.J.2
-
77
-
-
80053957236
-
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
-
12 October
-
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I. 12 October 2011. Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS One http://dx.doi.org/10.1371 /journal.pone.0025724.
-
(2011)
PLoS One
-
-
Ausec, L.1
Zakrzewski, M.2
Goesmann, A.3
Schlüter, A.4
Mandic-Mulec, I.5
-
78
-
-
80053095402
-
Reactivity of bacterial and fungal laccases with lignin under alkaline conditions
-
Moya R, Saastamoinen P, Hernandez M, Suurnakki A, Arias E, Mattinen ML. 2011. Reactivity of bacterial and fungal laccases with lignin under alkaline conditions. Bioresour. Technol. 102:10006-10012. http://dx.doi.org/10.1016/j.biortech.2011.08.046.
-
(2011)
Bioresour. Technol.
, vol.102
, pp. 10006-10012
-
-
Moya, R.1
Saastamoinen, P.2
Hernandez, M.3
Suurnakki, A.4
Arias, E.5
Mattinen, M.L.6
-
79
-
-
84859817791
-
Laccase-catalysed oxidations of naturally occurring phenols: from in vivo biosynthetic pathways to green synthetic applications
-
Jeon JR, Baldrian P, Murugesan K, Chang YS. 2012. Laccase-catalysed oxidations of naturally occurring phenols: from in vivo biosynthetic pathways to green synthetic applications. Microb. Biotechnol. 5:318-332. http://dx.doi.org/10.1111/j.1751-7915.2011.00273.x.
-
(2012)
Microb. Biotechnol.
, vol.5
, pp. 318-332
-
-
Jeon, J.R.1
Baldrian, P.2
Murugesan, K.3
Chang, Y.S.4
-
80
-
-
0028013536
-
The structure and function of fungal laccases
-
Thurston CF. 1994. The structure and function of fungal laccases. Microbiology 140:19-26. http://dx.doi.org/10.1099/13500872-140-1-19.
-
(1994)
Microbiology
, vol.140
, pp. 19-26
-
-
Thurston, C.F.1
|