-
2
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura K. (2009) Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 79 321-349.
-
(2009)
Annu. Rev. Biochem.
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
3
-
-
84855255195
-
ADARs: Allies or enemies the importance of A-to-I RNA editing in human disease: From cancer to HIV-1
-
Gallo A. and Locatelli F. (2012) ADARs: allies or enemies The importance of A-to-I RNA editing in human disease: from cancer to HIV-1. Biol. Rev. Camb. Philos. Soc. 87 95-110.
-
(2012)
Biol. Rev. Camb. Philos. Soc.
, vol.87
, pp. 95-110
-
-
Gallo, A.1
Locatelli, F.2
-
4
-
-
84886865162
-
Deciphering the functions and regulation of brain-enriched A-to-I RNA editing
-
Li J.B. and Church G.M. (2013) Deciphering the functions and regulation of brain-enriched A-to-I RNA editing. Nat. Neurosci. 16 1518-1522.
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 1518-1522
-
-
Li, J.B.1
Church, G.M.2
-
6
-
-
84863229628
-
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
-
Peng Z. Cheng Y. Tan B.C.-M. Kang L. Tian Z. Zhu Y. Zhang W. Liang Y. Hu X. Tan X. et al. (2012) Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome. Nat. Biotechnol. 30 253-260.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 253-260
-
-
Peng, Z.1
Cheng, Y.2
Tan, B.C.-M.3
Kang, L.4
Tian, Z.5
Zhu, Y.6
Zhang, W.7
Liang, Y.8
Hu, X.9
Tan, X.10
-
8
-
-
80055076214
-
Identification of widespread ultra-edited human RNAs
-
Carmi S. Borukhov I. and Levanon E.Y. (2011) Identification of widespread ultra-edited human RNAs. PLoS Genet. 7 e1002317.
-
(2011)
PLoS Genet.
, vol.7
-
-
Carmi, S.1
Borukhov, I.2
Levanon, E.Y.3
-
9
-
-
84895535383
-
A-to-I RNA editing occurs at over a hundred million genomic sites located in a majority of human genes
-
Bazak L. Haviv A. Barak M. Jacob-Hirsch J. Deng P. Zhang R. Isaacs F.J. Rechavi G. Li J.B. Eisenberg E. et al. (2013) A-to-I RNA editing occurs at over a hundred million genomic sites located in a majority of human genes. Genome Res. 24 365-376.
-
(2013)
Genome Res.
, vol.24
, pp. 365-376
-
-
Bazak, L.1
Haviv, A.2
Barak, M.3
Jacob-Hirsch, J.4
Deng, P.5
Zhang, R.6
Isaacs, F.J.7
Rechavi, G.8
Li, J.B.9
Eisenberg, E.10
-
10
-
-
3543004084
-
Systematic identification of abundant A-to-I editing sites in the human transcriptome
-
Levanon E.Y. Eisenberg E. Yelin R. Nemzer S. Hallegger M. Shemesh R. Fligelman Z.Y. Shoshan A. Pollock S.R. Sztybel D. et al. (2004) Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat. Biotechnol. 22 1001-1005.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1001-1005
-
-
Levanon, E.Y.1
Eisenberg, E.2
Yelin, R.3
Nemzer, S.4
Hallegger, M.5
Shemesh, R.6
Fligelman, Z.Y.7
Shoshan, A.8
Pollock, S.R.9
Sztybel, D.10
-
13
-
-
12344300804
-
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
-
Athanasiadis A. Rich A. and Maas S. (2004) Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol. 2 e391.
-
(2004)
PLoS Biol.
, vol.2
-
-
Athanasiadis, A.1
Rich, A.2
Maas, S.3
-
14
-
-
0036250811
-
Alu repeats and human genomic diversity
-
Batzer M.A. and Deininger P.L. (2002) Alu repeats and human genomic diversity. Nature 3 370-379 .
-
(2002)
Nature
, vol.3
, pp. 370-379
-
-
Batzer, M.A.1
Deininger, P.L.2
-
15
-
-
34748869000
-
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
-
Sela N. Mersch B. Gal-Mark N. Lev-Maor G. Hotz-Wagenblatt A. and Ast G. (2007) Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. Genome Biol. 8 R127.1-R127.19.
-
(2007)
Genome Biol.
, vol.8
-
-
Sela, N.1
Mersch, B.2
Gal-Mark, N.3
Lev-Maor, G.4
Hotz-Wagenblatt, A.5
Ast, G.6
-
16
-
-
84855199454
-
Alu elements: Know the SINEs
-
Deininger P. (2011) Alu elements: know the SINEs. Genome Biol. 12 236-247.
-
(2011)
Genome Biol.
, vol.12
, pp. 236-247
-
-
Deininger, P.1
-
17
-
-
77954313452
-
ADAR editing in double-stranded UTRs and other noncoding RNA sequences
-
Hundley H.A. and Bass B.L. (2010) ADAR editing in double-stranded UTRs and other noncoding RNA sequences. Trends Biochem. Sci. 35 377-383.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 377-383
-
-
Hundley, H.A.1
Bass, B.L.2
-
19
-
-
79952073022
-
Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
-
Greenberger S. Levanon E.Y. Paz-Yaacov N. Barzilai A. Safran M. Osenberg S. Amariglio N. Rechavi G. and Eisenberg E. (2010) Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats. BMC Genom. 11 608-613.
-
(2010)
BMC Genom.
, vol.11
, pp. 608-613
-
-
Greenberger, S.1
Levanon, E.Y.2
Paz-Yaacov, N.3
Barzilai, A.4
Safran, M.5
Osenberg, S.6
Amariglio, N.7
Rechavi, G.8
Eisenberg, E.9
-
20
-
-
79956271523
-
Predicting sites of ADAR editing in double-stranded RNA
-
Eggington J.M. Greene T. and Bass B.L. (2011) Predicting sites of ADAR editing in double-stranded RNA. Nat. Commun. 2 319-327.
-
(2011)
Nat. Commun.
, vol.2
, pp. 319-327
-
-
Eggington, J.M.1
Greene, T.2
Bass, B.L.3
-
21
-
-
77955937378
-
Large-scale analysis of structural sequence and thermodynamic characteristics of A-to-I RNA editing sites in human Alu repeats
-
Kleinberger Y. and Eisenberg E. (2010) Large-scale analysis of structural sequence and thermodynamic characteristics of A-to-I RNA editing sites in human Alu repeats. BMC Genom. 11 453-469.
-
(2010)
BMC Genom.
, vol.11
, pp. 453-469
-
-
Kleinberger, Y.1
Eisenberg, E.2
-
22
-
-
0034711082
-
Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities
-
Lehmann K.A. and Bass B.L. (2000) Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities.. Biochemistry 39 12875-12884.
-
(2000)
Biochemistry
, vol.39
, pp. 12875-12884
-
-
Lehmann, K.A.1
Bass, B.L.2
-
24
-
-
0024233053
-
An unwinding activity that covalently modifies its double-stranded RNA substrate
-
Bass B.L. and Weintraub H. (1988) An unwinding activity that covalently modifies its double-stranded RNA substrate. Cell 55 1089-1098.
-
(1988)
Cell
, vol.55
, pp. 1089-1098
-
-
Bass, B.L.1
Weintraub, H.2
-
25
-
-
84855320189
-
Accurate Identification of A-to-I RNA editing in human by transcriptome sequencing
-
Bahn J.H. Lee J.H. Li G. Greer C. Peng G. and Xiao X. (2012) Accurate Identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 22 142-150.
-
(2012)
Genome Res.
, vol.22
, pp. 142-150
-
-
Bahn, J.H.1
Lee, J.H.2
Li, G.3
Greer, C.4
Peng, G.5
Xiao, X.6
-
26
-
-
66349122954
-
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing
-
Li J.B. Levanon E.Y. Yoon J.-K. Aach J. Xie B. Leproust E. Zhang K. Gao Y. and Church G.M. (2009) Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science 324 1210-1213.
-
(2009)
Science
, vol.324
, pp. 1210-1213
-
-
Li, J.B.1
Levanon, E.Y.2
Yoon, J.-K.3
Aach, J.4
Xie, B.5
Leproust, E.6
Zhang, K.7
Gao, Y.8
Church, G.M.9
-
27
-
-
0037062438
-
RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
-
Morse D.P. Aruscavage P.J. and Bass B.L. (2002) RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. Proc. Natl. Acad. Sci. U. S. A. 99 7906-7911.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 7906-7911
-
-
Morse, D.P.1
Aruscavage, P.J.2
Bass, B.L.3
-
28
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
Yelin R. Dahary D. Sorek R. Levanon E.Y. Goldstein O. Shoshan A. Diber A. Biton S. Tamir Y. Khosravi R. et al. (2003) Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol. 21 379-386.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
Levanon, E.Y.4
Goldstein, O.5
Shoshan, A.6
Diber, A.7
Biton, S.8
Tamir, Y.9
Khosravi, R.10
-
29
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S. Tomaru Y. Kasukawa T. Waki K. Nakanishi M. Nakamura M. Nishida H. Yap C.C. Suzuki M. Kawai J. et al. (2005) Antisense transcription in the mammalian transcriptome. Science 309 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
-
30
-
-
30944450668
-
Letter from the editor: Adenosine-to-inosine RNA editing in Alu repeats in the human genome
-
Levanon K. Eisenberg E. Rechavi G. and Levanon E.Y. (2005) Letter from the editor: adenosine-to-inosine RNA editing in Alu repeats in the human genome. EMBO Rep. 6 831-835.
-
(2005)
EMBO Rep.
, vol.6
, pp. 831-835
-
-
Levanon, K.1
Eisenberg, E.2
Rechavi, G.3
Levanon, E.Y.4
-
31
-
-
33749256772
-
RNA editing level in the mouse is determined by the genomic repeat repertoire
-
Neeman Y. Levanon E.Y. Jantsch M.F. and Eisenberg E. (2006) RNA editing level in the mouse is determined by the genomic repeat repertoire. RNA 12 1802-1809.
-
(2006)
RNA
, vol.12
, pp. 1802-1809
-
-
Neeman, Y.1
Levanon, E.Y.2
Jantsch, M.F.3
Eisenberg, E.4
-
32
-
-
84860376054
-
The intricate relationship between RNA structure editing and splicing
-
Rieder L.E. and Reenan R.A. (2012) The intricate relationship between RNA structure editing and splicing. Semin. Cell Dev. Biol. 23 281-288.
-
(2012)
Semin. Cell Dev. Biol.
, vol.23
, pp. 281-288
-
-
Rieder, L.E.1
Reenan, R.A.2
-
35
-
-
33646000325
-
Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation
-
Kawahara Y. and Nishikura K. (2006) Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation. FEBS Lett. 580 2301-2305.
-
(2006)
FEBS Lett.
, vol.580
, pp. 2301-2305
-
-
Kawahara, Y.1
Nishikura, K.2
-
36
-
-
84896707317
-
Alu elements shape the primate transcriptome by cis-regulation of RNA editing
-
Daniel C. Silberberg G. Behm M. and Ö hman M. (2014) Alu elements shape the primate transcriptome by cis-regulation of RNA editing. Genome Biol. 15 R28.1-R28.17.
-
(2014)
Genome Biol.
, vol.15
-
-
Daniel, C.1
Silberberg, G.2
Behm, M.3
Öhman, M.4
-
37
-
-
0032481315
-
Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA
-
Paul M.S. and Bass B.L. (1998) Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J. 17 1120-1127.
-
(1998)
EMBO J.
, vol.17
, pp. 1120-1127
-
-
Paul, M.S.1
Bass, B.L.2
-
38
-
-
84874618556
-
A high throughput screen to identify enhancers of ADAR-mediated RNA-editing
-
Garrncarz W. Tariq A. Handl C. Pusch O. and Jantsch M.F. (2013) A high throughput screen to identify enhancers of ADAR-mediated RNA-editing. RNA Biol. 10 1-13.
-
(2013)
RNA Biol.
, vol.10
, pp. 1-13
-
-
Garrncarz, W.1
Tariq, A.2
Handl, C.3
Pusch, O.4
Jantsch, M.F.5
|