메뉴 건너뛰기




Volumn 6, Issue 4, 2014, Pages 988-999

Genome evolution by matrix algorithms: Cellular automata approach to population genetics

Author keywords

Fixation; Gene; Genomics; Linkage; Neutral theory; SNPs

Indexed keywords

ALGORITHM; BIOLOGICAL MODEL; COMPUTER PROGRAM; DNA SEQUENCE; GENETIC RECOMBINATION; GENETICS; HUMAN; HUMAN CHROMOSOME; HUMAN GENOME; MOLECULAR EVOLUTION; PHYSIOLOGY; PROCEDURES;

EID: 84902980489     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu075     Document Type: Article
Times cited : (9)

References (40)
  • 1
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • Abecasis GR, et al. 2012. An integrated map of genetic variation from 1,092 human genomes. Nature 491:56-65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Abecasis, G.R.1
  • 2
    • 46649115514 scopus 로고    scopus 로고
    • Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures
    • Bechtel JM, et al. 2008. Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures. BMC Genomics 9: 284.
    • (2008) BMC Genomics , vol.9 , pp. 284
    • Bechtel, J.M.1
  • 3
    • 34347222211 scopus 로고    scopus 로고
    • The neoselectionist theory of genome evolution
    • Bernardi G. 2007. The neoselectionist theory of genome evolution. Proc Natl Acad Sci U S A. 104:8385-8390.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 8385-8390
    • Bernardi, G.1
  • 4
    • 0014143244 scopus 로고
    • Linkage and selection: Theoretical analysis of the deterministic two locus random mating model
    • Bodmer WF, Felsenstein J. 1967. Linkage and selection: theoretical analysis of the deterministic two locus random mating model. Genetics 57: 237-265.
    • (1967) Genetics , vol.57 , pp. 237-265
    • Bodmer, W.F.1    Felsenstein, J.2
  • 5
    • 43849112140 scopus 로고    scopus 로고
    • GENOMEPOP: A program to simulate genomes in populations
    • Carvajal-Rodriguez A. 2008. GENOMEPOP: a program to simulate genomes in populations. BMC Bioinformatics 9:223.
    • (2008) BMC Bioinformatics , vol.9 , pp. 223
    • Carvajal-Rodriguez, A.1
  • 6
    • 77950631483 scopus 로고    scopus 로고
    • Simulation of genes and genomes forward in time
    • Carvajal-Rodriguez A. 2010. Simulation of genes and genomes forward in time. Curr Genomics. 11:58-61.
    • (2010) Curr Genomics , vol.11 , pp. 58-61
    • Carvajal-Rodriguez, A.1
  • 7
    • 52449110029 scopus 로고    scopus 로고
    • Fregene: Simulation of realistic sequencelevel data in populations and ascertained samples
    • Chadeau-Hyam M, et al. 2008. Fregene: simulation of realistic sequencelevel data in populations and ascertained samples. BMC Bioinformatics 9:364.
    • (2008) BMC Bioinformatics , vol.9 , pp. 364
    • Chadeau-Hyam, M.1
  • 9
    • 84884227685 scopus 로고    scopus 로고
    • An experimental test on the probability of extinction of new genetic variants
    • Chelo IM, Nedli J, Gordo I, Teotonio H. 2013. An experimental test on the probability of extinction of new genetic variants. Nat Commun. 4: 2417.
    • (2013) Nat Commun , vol.4 , pp. 2417
    • Chelo, I.M.1    Nedli, J.2    Gordo, I.3    Teotonio, H.4
  • 10
    • 36749058855 scopus 로고    scopus 로고
    • Effects of dominance ontheprobabilityoffixation ofamutantallele
    • Chen CT, Chi QS, Sawyer SA. 2008. Effects of dominance ontheprobabilityoffixation ofamutantallele. JMathBiol. 56:413-434.
    • (2008) JMathBiol , vol.56 , pp. 413-434
    • Chen, C.T.1    Chi, Q.S.2    Sawyer, S.A.3
  • 11
    • 79959725029 scopus 로고    scopus 로고
    • Variation in genome-wide mutation rates within and between human families
    • Conrad DF, et al. 2011. Variation in genome-wide mutation rates within and between human families. Nat Genet. 43:712-714.
    • (2011) Nat Genet , vol.43 , pp. 712-714
    • Conrad, D.F.1
  • 12
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • Consortium TIH. 2005. A haplotype map of the human genome. Nature 437:1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
    • Consortium, T.I.H.1
  • 14
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein J. 1974. The evolutionary advantage of recombination. Genetics 78:737-756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 16
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotypemap of over 3.1 million SNPs
    • Frazer KA, et al. 2007. A second generation human haplotypemap of over 3.1 million SNPs. Nature 449:851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1
  • 17
    • 0028145974 scopus 로고
    • Dynamics of genetic variability in two-locus models of stabilizing selection
    • Gavrilets S, Hastings A. 1994. Dynamics of genetic variability in two-locus models of stabilizing selection. Genetics 138:519-532.
    • (1994) Genetics , vol.138 , pp. 519-532
    • Gavrilets, S.1    Hastings, A.2
  • 18
    • 84955349191 scopus 로고
    • A mathematical theory of natural and artificial selection, part V: Selection and mutation
    • Haldane J. 1927. A mathematical theory of natural and artificial selection, part V: selection and mutation. Math Proc Camb Philos Soc. 23: 838-844.
    • (1927) Math Proc Camb Philos Soc , vol.23 , pp. 838-844
    • Haldane, J.1
  • 19
    • 0004226825 scopus 로고    scopus 로고
    • Principles of population genetics
    • 4th ed. Sunderland (MA) Sinauer Associates
    • Hartl D, Clark A. 2006. Principles of population genetics. 4th ed. Sunderland (MA): Sinauer Associates, Inc.
    • (2006) Inc
    • Hartl, D.1    Clark, A.2
  • 20
    • 56649111423 scopus 로고    scopus 로고
    • A flexible forward simulator for populations subject to selection and demography
    • Hernandez RD. 2008. A flexible forward simulator for populations subject to selection and demography. Bioinformatics 24:2786-2787.
    • (2008) Bioinformatics , vol.24 , pp. 2786-2787
    • Hernandez, R.D.1
  • 21
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill WG, Robertson A. 1966. The effect of linkage on limits to artificial selection. Genet Res. 8:269-294.
    • (1966) Genet Res , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 22
    • 0035132473 scopus 로고    scopus 로고
    • Great ape DNA sequences reveal a reduced diversity and an expansion in humans
    • Kaessmann H, Wiebe V, Weiss G, Paabo S. 2001. Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nat Genet. 27:155-156.
    • (2001) Nat Genet , vol.27 , pp. 155-156
    • Kaessmann, H.1    Wiebe, V.2    Weiss, G.3    Paabo, S.4
  • 23
    • 84874773677 scopus 로고    scopus 로고
    • Deleterious alleles in the human genome are on average younger than neutral alleles of the same frequency
    • Kiezun A, et al. 2013. Deleterious alleles in the human genome are on average younger than neutral alleles of the same frequency. PLoS Genet. 9:e1003301.
    • (2013) PLoS Genet , vol.9
    • Kiezun, A.1
  • 24
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • Kimura M. 1962. On the probability of fixation of mutant genes in a population. Genetics 47:713-719.
    • (1962) Genetics , vol.47 , pp. 713-719
    • Kimura, M.1
  • 26
    • 0037087561 scopus 로고    scopus 로고
    • Classification of common conserved sequences in mammalian intergenic regions
    • Kondrashov AS, Shabalina SA. 2002. Classification of common conserved sequences in mammalian intergenic regions. Hum Mol Genet. 11: 669-674.
    • (2002) Hum Mol Genet , vol.11 , pp. 669-674
    • Kondrashov, A.S.1    Shabalina, S.A.2
  • 27
    • 79960914105 scopus 로고    scopus 로고
    • Inference of human population history from individual whole-genome sequences
    • Li H, Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature 475:493-496.
    • (2011) Nature , vol.475 , pp. 493-496
    • Li, H.1    Durbin, R.2
  • 28
    • 77957959525 scopus 로고    scopus 로고
    • The neutral theory of molecular evolution in the genomic era
    • Nei M, Suzuki Y, Nozawa M. 2010. The neutral theory of molecular evolution in the genomic era. Annu Rev Genomics Hum Genet. 11: 265-289.
    • (2010) Annu Rev Genomics Hum Genet , vol.11 , pp. 265-289
    • Nei, M.1    Suzuki, Y.2    Nozawa, M.3
  • 29
    • 0001654122 scopus 로고    scopus 로고
    • Development of neutral and nearly neutral theories
    • Ohta T, Gillespie JH. 1996. Development of neutral and nearly neutral theories. Theor Popul Biol. 49:128-142.
    • (1996) Theor Popul Biol , vol.49 , pp. 128-142
    • Ohta, T.1    Gillespie, J.H.2
  • 30
    • 52749098548 scopus 로고    scopus 로고
    • The fixation probability of beneficial mutations
    • Patwa Z, Wahl LM. 2008. The fixation probability of beneficial mutations. J R Soc Interface. 5:1279-1289.
    • (2008) J R Soc Interface , vol.5 , pp. 1279-1289
    • Patwa, Z.1    Wahl, L.M.2
  • 31
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: The causes and consequences of codon bias
    • Plotkin JB, Kudla G. 2011. Synonymous but not the same: the causes and consequences of codon bias. Nat Rev Genet. 12:32-42.
    • (2011) Nat Rev Genet , vol.12 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 32
    • 70749131442 scopus 로고    scopus 로고
    • Evolution of genomic sequence inhomogeneity at mid-range scales
    • Prakash A, et al. 2009. Evolution of genomic sequence inhomogeneity at mid-range scales. BMC Genomics 10:513.
    • (2009) BMC Genomics , vol.10 , pp. 513
    • Prakash, A.1
  • 34
    • 54949149323 scopus 로고    scopus 로고
    • Mendel's Accountant: A biologically realistic forward-time population genetics program
    • Sanford J, Baumgardner J, Brewer W, Gibson P, Remine W. 2007. Mendel's Accountant: a biologically realistic forward-time population genetics program. SCPE 8:147-165.
    • (2007) SCPE , vol.8 , pp. 147-165
    • Sanford, J.1    Baumgardner, J.2    Brewer, W.3    Gibson, P.4    Remine, W.5
  • 36
    • 77951615674 scopus 로고    scopus 로고
    • Genetic hitchhiking versus background selection: The controversy and its implications
    • Stephan W. 2010. Genetic hitchhiking versus background selection: the controversy and its implications. Philos Trans R Soc Lond B Biol Sci. 365: 1245-1253.
    • (2010) Philos Trans R Soc Lond B Biol Sci , vol.365 , pp. 1245-1253
    • Stephan, W.1
  • 37
    • 56549087988 scopus 로고    scopus 로고
    • Neutralism and selectionism: A network-based reconciliation
    • Wagner A. 2008. Neutralism and selectionism: a network-based reconciliation. Nat Rev Genet. 9:965-974.
    • (2008) Nat Rev Genet , vol.9 , pp. 965-974
    • Wagner, A.1
  • 39
    • 0006407128 scopus 로고
    • Factor interaction and linkage in evolution
    • Wright S. 1965. Factor interaction and linkage in evolution. Proc R Soc Lond B Biol Sci. 162:80-104.
    • (1965) Proc R Soc Lond B Biol Sci , vol.162 , pp. 80-104
    • Wright, S.1
  • 40
    • 79955596565 scopus 로고    scopus 로고
    • Genomic diversity in pig (Sus scrofa) and its comparison with human and other livestock
    • Zhang C, Plastow G. 2011. Genomic diversity in pig (Sus scrofa) and its comparison with human and other livestock. Curr Genomics. 12: 138-146.
    • (2011) Curr Genomics , vol.12 , pp. 138-146
    • Zhang, C.1    Plastow, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.