메뉴 건너뛰기




Volumn 98, Issue 7, 2014, Pages 909-915

Development of a genomics-based LAMP (loop-mediated isothermal amplification) assay for detection of Pseudomonas fuscovaginae from rice

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84902957271     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-09-13-0957-RE     Document Type: Article
Times cited : (32)

References (48)
  • 1
    • 84878945190 scopus 로고    scopus 로고
    • Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages
    • Adorada, D. L., Stodart, B. J., Cruz, C. V., Gregorio, G., Pangga, I., and Ash, G. J. 2013. Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages. Euphytica 192:1-16.
    • (2013) Euphytica , vol.192 , pp. 1-16
    • Adorada, D.L.1    Stodart, B.J.2    Cruz, C.V.3    Gregorio, G.4    Pangga, I.5    Ash, G.J.6
  • 2
    • 84893380370 scopus 로고    scopus 로고
    • Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia's biosecurity
    • Notes
    • Adorada, D. L., Stodart, B. J., Tpoi, R. P., Costa, S. S., and Ash, G. J. Bacteria associated with sheath browning and grain discoloration of rice in East Timor and implications for Australia's biosecurity. Australas. Plant Dis. Notes 8:43-47.
    • Australas. Plant Dis. , vol.8 , pp. 43-47
    • Adorada, D.L.1    Stodart, B.J.2    Tpoi, R.P.3    Costa, S.S.4    Ash, G.J.5
  • 3
    • 0033207021 scopus 로고    scopus 로고
    • Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin
    • Alonso, A., Rojo, F., and Martinez, J. L. 1999. Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin. Environ. Microbiol. 1:421-430.
    • (1999) Environ. Microbiol. , vol.1 , pp. 421-430
    • Alonso, A.1    Rojo, F.2    Martinez, J.L.3
  • 7
    • 84873702133 scopus 로고    scopus 로고
    • Erwinia amylovora loopmediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight
    • Bühlmann, A., Pothier, J. F., Rezzonico, F., Smits, T. H. M., Andreou, M., Boonham, N., Duffy, B., and Frey, J. E. 2013. Erwinia amylovora loopmediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight. J. Microbiol. Methods 92:332-339.
    • (2013) J. Microbiol. Methods , vol.92 , pp. 332-339
    • Bühlmann, A.1    Pothier, J.F.2    Rezzonico, F.3    Smits, T.H.M.4    Andreou, M.5    Boonham, N.6    Duffy, B.7    Frey, J.E.8
  • 8
    • 84873712110 scopus 로고    scopus 로고
    • Genomics-informed design of loopmediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level
    • Bühlmann, A., Pothier, J. F., Tomlinson, J. A., Frey, J. E., Boonham, N., Smits, T. H. M., and Duffy, B. 2013. Genomics-informed design of loopmediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level. Plant Pathol. 62:475-484.
    • (2013) Plant Pathol. , vol.62 , pp. 475-484
    • Bühlmann, A.1    Pothier, J.F.2    Tomlinson, J.A.3    Frey, J.E.4    Boonham, N.5    Smits, T.H.M.6    Duffy, B.7
  • 9
    • 77956292632 scopus 로고    scopus 로고
    • Bacterial pathogens of rice in the Kingdom of Cambodia and description of a new pathogen causing a serious sheath rot disease
    • Cother, E. J., Noble, D. H., van de Ven, R. J., Lanoiselet, V., Ash, G., Vuthy, N., Visarto, P., and Stodart, B. 2010. Bacterial pathogens of rice in the Kingdom of Cambodia and description of a new pathogen causing a serious sheath rot disease. Plant Pathol. 59:944-953.
    • (2010) Plant Pathol. , vol.59 , pp. 944-953
    • Cother, E.J.1    Noble, D.H.2    van de Ven, R.J.3    Lanoiselet, V.4    Ash, G.5    Vuthy, N.6    Visarto, P.7    Stodart, B.8
  • 10
    • 67649414370 scopus 로고    scopus 로고
    • Polyphasic identification of Pseudomonas fuscovaginae causing sheath and glume lesions on rice in Australia
    • Cother, E. J., Stodart, B., Noble, D. H., Reinke, R., and van de Ven, R. J. 2009. Polyphasic identification of Pseudomonas fuscovaginae causing sheath and glume lesions on rice in Australia. Australas. Plant Pathol. 38:247-261.
    • (2009) Australas. Plant Pathol. , vol.38 , pp. 247-261
    • Cother, E.J.1    Stodart, B.2    Noble, D.H.3    Reinke, R.4    van de Ven, R.J.5
  • 11
    • 0008091276 scopus 로고    scopus 로고
    • Bacterial diseases of rice.1. Pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines
    • Cottyn, B., Cerez, M. T., VanOutryve, M. F., Barroga, J., Swings, J., and Mew, T. W. 1996. Bacterial diseases of rice.1. Pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines. Plant Dis. 80:429-437.
    • (1996) Plant Dis. , vol.80 , pp. 429-437
    • Cottyn, B.1    Cerez, M.T.2    VanOutryve, M.F.3    Barroga, J.4    Swings, J.5    Mew, T.W.6
  • 13
    • 0011726504 scopus 로고
    • Bacterial sheath rot of wheat caused by Pseudomonas fuscovaginae in the highlands of Mexico
    • Duveiller, E., and Maraite, H. 1990. Bacterial sheath rot of wheat caused by Pseudomonas fuscovaginae in the highlands of Mexico. Plant Dis. 74:932-935.
    • (1990) Plant Dis. , vol.74 , pp. 932-935
    • Duveiller, E.1    Maraite, H.2
  • 14
    • 0011732073 scopus 로고
    • 1st detection of Pseudomonas fuscovaginae on maize and sorghum in Burundi
    • Duveiller, E., Snacken, F., Maraite, H., and Autrique, A. 1989. 1st detection of Pseudomonas fuscovaginae on maize and sorghum in Burundi. Plant Dis. 73:514-517.
    • (1989) Plant Dis. , vol.73 , pp. 514-517
    • Duveiller, E.1    Snacken, F.2    Maraite, H.3    Autrique, A.4
  • 15
    • 84869046080 scopus 로고    scopus 로고
    • A reverse transcription loopmediated isothermal amplification method for rapid detection of bovine viral diarrhea virus
    • Fan, Q., Xie, Z. X., Xie, L. J., Liu, J. B., Pang, Y. S., Deng, X. W., Xie, Z. Q., Peng, Y., and Wang, X. Q. 2012. A reverse transcription loopmediated isothermal amplification method for rapid detection of bovine viral diarrhea virus. J. Virol. Methods 186:43-48.
    • (2012) J. Virol. Methods , vol.186 , pp. 43-48
    • Fan, Q.1    Xie, Z.X.2    Xie, L.J.3    Liu, J.B.4    Pang, Y.S.5    Deng, X.W.6    Xie, Z.Q.7    Peng, Y.8    Wang, X.Q.9
  • 16
    • 84874067842 scopus 로고    scopus 로고
    • Evaluation of loop-mediated isothermal amplification suitable for molecular monitoring of schistosome-infected snails in field laboratories
    • Hamburger, J., Abbasi, I., Kariuki, C., Wanjala, A., Mzungu, E., Mungai, P., Muchiri, E., and King, C. H. 2013. Evaluation of loop-mediated isothermal amplification suitable for molecular monitoring of schistosome-infected snails in field laboratories. Am. J. Trop. Med. Hyg. 88:344-351.
    • (2013) Am. J. Trop. Med. Hyg. , vol.88 , pp. 344-351
    • Hamburger, J.1    Abbasi, I.2    Kariuki, C.3    Wanjala, A.4    Mzungu, E.5    Mungai, P.6    Muchiri, E.7    King, C.H.8
  • 17
    • 36448980309 scopus 로고    scopus 로고
    • The epidemiology and management of bacterial blight (Pseudomonas syringae pv. pisi) of field pea (Pisum sativum) in Australia: A review
    • Hollaway, G. J., Bretag, T. W., and Price, T. V. 2007. The epidemiology and management of bacterial blight (Pseudomonas syringae pv. pisi) of field pea (Pisum sativum) in Australia: a review. Aust. J. Agric. Res. 58:1086-1099.
    • (2007) Aust. J. Agric. Res. , vol.58 , pp. 1086-1099
    • Hollaway, G.J.1    Bretag, T.W.2    Price, T.V.3
  • 18
    • 84856462788 scopus 로고    scopus 로고
    • A modified visual loop-mediated isothermal amplification method for diagnosis and differentiation of main pathogens from Mycobacterium tuberculosis complex
    • Hong, M., Zha, L., Fu, W. L., Zou, M. J., Li, W. J., and Xu, D. G. 2012. A modified visual loop-mediated isothermal amplification method for diagnosis and differentiation of main pathogens from Mycobacterium tuberculosis complex. World. J. Microbiol. Biotechnol. 28:523-531.
    • (2012) World. J. Microbiol. Biotechnol. , vol.28 , pp. 523-531
    • Hong, M.1    Zha, L.2    Fu, W.L.3    Zou, M.J.4    Li, W.J.5    Xu, D.G.6
  • 19
    • 0029186540 scopus 로고
    • Diversity of Pseudomonas fuscovaginae and other fluorescent pseudomonads isolated from diseased rice
    • Jaunet, T., Laguerre, G., Lemanceau, P., Frutos, R., and Notteghem, J. L. 1995. Diversity of Pseudomonas fuscovaginae and other fluorescent pseudomonads isolated from diseased rice. Phytopathology 85:1534-1541.
    • (1995) Phytopathology , vol.85 , pp. 1534-1541
    • Jaunet, T.1    Laguerre, G.2    Lemanceau, P.3    Frutos, R.4    Notteghem, J.L.5
  • 20
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., Taylor, W. R., and Thornton, J. M. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 21
    • 33847621663 scopus 로고    scopus 로고
    • Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances
    • Kaneko, H., Kawana, T., Fukushima, E., and Suzutani, T. 2007. Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. J. Biochem. Biophys. Methods 70:499-501.
    • (2007) J. Biochem. Biophys. Methods , vol.70 , pp. 499-501
    • Kaneko, H.1    Kawana, T.2    Fukushima, E.3    Suzutani, T.4
  • 24
    • 68849125198 scopus 로고    scopus 로고
    • Comparative genomics-guided loop-mediated isothermal amplification for characterization of Pseudomonas syringae pv. phaseolicola
    • Li, X., Nie, J., Ward, L., Madani, M., Hsiang, T., Zhao, Y., and De Boer, S. H. 2009. Comparative genomics-guided loop-mediated isothermal amplification for characterization of Pseudomonas syringae pv. phaseolicola. J. Appl. Microbiol. 107:717-726.
    • (2009) J. Appl. Microbiol. , vol.107 , pp. 717-726
    • Li, X.1    Nie, J.2    Ward, L.3    Madani, M.4    Hsiang, T.5    Zhao, Y.6    De Boer, S.H.7
  • 25
    • 84863181598 scopus 로고    scopus 로고
    • Development and evaluation of a loop-mediated isothermal amplification assay for rapid detection and identification of Pectobacterium atrosepticum
    • Li, X., Nie, J. B., Ward, L. J., Nickerson, J., and De Boer, S. H. 2011. Development and evaluation of a loop-mediated isothermal amplification assay for rapid detection and identification of Pectobacterium atrosepticum. Can. J. Plant Pathol.-Rev. Can. Phytopathol. 33:447-457.
    • (2011) Can. J. Plant Pathol.-Rev. Can. Phytopathol. , vol.33 , pp. 447-457
    • Li, X.1    Nie, J.B.2    Ward, L.J.3    Nickerson, J.4    De Boer, S.H.5
  • 28
    • 84879247091 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP): Recent progress in research and development
    • Mori, Y., Kanda, H., and Notomi, T. 2013. Loop-mediated isothermal amplification (LAMP): recent progress in research and development. J. Infect. Chemother. 19:404-411.
    • (2013) J. Infect. Chemother. , vol.19 , pp. 404-411
    • Mori, Y.1    Kanda, H.2    Notomi, T.3
  • 29
    • 77955516907 scopus 로고    scopus 로고
    • DNA sequence-based analysis of the Pseudomonas species
    • Mulet, M., Lalucat, J., and Garcia-Valdes, E. 2010. DNA sequence-based analysis of the Pseudomonas species. Environ. Microbiol. 12:1513-1530.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1513-1530
    • Mulet, M.1    Lalucat, J.2    Garcia-Valdes, E.3
  • 30
    • 84878623183 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification-based detection of Fusarium graminearum
    • Niessen, L. 2013. Loop-mediated isothermal amplification-based detection of Fusarium graminearum. Methods Mol. Biol. 968:177-193.
    • (2013) Methods Mol. Biol. , vol.968 , pp. 177-193
    • Niessen, L.1
  • 34
    • 2842611121 scopus 로고
    • Identification and characterization of Pseudomonas fuscovaginae, the causal agent of bacterial sheath brown rot of rice, from Madagascar and other countries
    • Rott, P., Notteghem, J. L., and Frossard, P. 1989. Identification and characterization of Pseudomonas fuscovaginae, the causal agent of bacterial sheath brown rot of rice, from Madagascar and other countries. Plant Dis. 73:133-137.
    • (1989) Plant Dis. , vol.73 , pp. 133-137
    • Rott, P.1    Notteghem, J.L.2    Frossard, P.3
  • 35
    • 3042826875 scopus 로고    scopus 로고
    • Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
    • Santos, S. R., and Ochman, H. 2004. Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environ. Microbiol. 6:754-759.
    • (2004) Environ. Microbiol. , vol.6 , pp. 754-759
    • Santos, S.R.1    Ochman, H.2
  • 36
    • 76149101176 scopus 로고    scopus 로고
    • Bacterial sheath brown rot of rice caused by Pseudomonas fuscovaginae in Nepal
    • in: C. Poisson and J. Rakotoarisoa, eds. Proc. CIRAD Conf Antananarivo, Madagascar
    • Sharma, S., Sthapit, B. R., Pradhanang, P. M., and Joshi, K. D. 1997. Bacterial sheath brown rot of rice caused by Pseudomonas fuscovaginae in Nepal. Pages 107-112 in: Conference Rice for Highlands. C. Poisson and J. Rakotoarisoa, eds. Proc. CIRAD Conf Antananarivo, Madagascar.
    • (1997) Conference Rice for Highlands , pp. 107-112
    • Sharma, S.1    Sthapit, B.R.2    Pradhanang, P.M.3    Joshi, K.D.4
  • 37
    • 84873084456 scopus 로고    scopus 로고
    • Control of Phytophthora nicotianae disease, induction of defense responses and genes expression of papaya fruits treated with Pseudomonas putida MGP1
    • Shi, J. Y., Liu, A. Y., Li, X. P., and Chen, W. X. 2013. Control of Phytophthora nicotianae disease, induction of defense responses and genes expression of papaya fruits treated with Pseudomonas putida MGP1. J. Sci. Food Agric. 93:568-574.
    • (2013) J. Sci. Food Agric. , vol.93 , pp. 568-574
    • Shi, J.Y.1    Liu, A.Y.2    Li, X.P.3    Chen, W.X.4
  • 39
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K., and Nei, M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 40
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 41
    • 0011753705 scopus 로고
    • The sheath brown rot disease of rice plant and its causal bacterium, Pseudomonas fuscovaginae A. Tanii, K. Miyajima & T. Akita sp. nov
    • Tanii, A., Miyajima, K., and Akita, T. 1976. The sheath brown rot disease of rice plant and its causal bacterium, Pseudomonas fuscovaginae A. Tanii, K. Miyajima & T. Akita sp. nov. Ann. Phytopathol. Soc. Jpn. 42:540-548.
    • (1976) Ann. Phytopathol. Soc. Jpn. , vol.42 , pp. 540-548
    • Tanii, A.1    Miyajima, K.2    Akita, T.3
  • 43
    • 0031827993 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, ropD and 16S rRNA genes
    • Yamamoto, S., and Harayama, S. 1998. Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, ropD and 16S rRNA genes. Int. J. Syst. Bacteriol. 48:813-819.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 813-819
    • Yamamoto, S.1    Harayama, S.2
  • 44
    • 84870544152 scopus 로고    scopus 로고
    • Sensitive and rapid detection of Campylobacter jejuni and Campylobacter coli using loop-mediated isothermal amplification
    • Yamazaki, W. 2013. Sensitive and rapid detection of Campylobacter jejuni and Campylobacter coli using loop-mediated isothermal amplification. Methods Mol. Biol. 943:267-77.
    • (2013) Methods Mol. Biol. , vol.943 , pp. 267-277
    • Yamazaki, W.1
  • 45
    • 84871564966 scopus 로고    scopus 로고
    • Development and evaluation of a loop-mediated isothermal amplification assay for the rapid detection of porcine cytomegalovirus under field conditions
    • 321-321
    • Yang, J. L., Zhang, S. H., Liu, Z. H., Yang, R., Huang, Y., and Wen, M. 2012. Development and evaluation of a loop-mediated isothermal amplification assay for the rapid detection of porcine cytomegalovirus under field conditions. Virol. J. 9:321-321.
    • (2012) Virol. J. , vol.9
    • Yang, J.L.1    Zhang, S.H.2    Liu, Z.H.3    Yang, R.4    Huang, Y.5    Wen, M.6
  • 46
    • 84890913924 scopus 로고    scopus 로고
    • Loop-mediated amplification of the Clavibacter michiganensis subsp. michiganensis micA gene is highly specific
    • Yasuhara-Bell, J., Kubota, R., Jenkins, D. M., and Alvarez, A. M. 2013. Loop-mediated amplification of the Clavibacter michiganensis subsp. michiganensis micA gene is highly specific. Phytopathology 103:1220-1226.
    • (2013) Phytopathology , vol.103 , pp. 1220-1226
    • Yasuhara-Bell, J.1    Kubota, R.2    Jenkins, D.M.3    Alvarez, A.M.4
  • 47
    • 0011791938 scopus 로고
    • Bacterial sheath brown rot of rice caused by Pseudomonas fuscovaginae in Latin America
    • Zeigler, R. S., and Alvarez, E. 1987. Bacterial sheath brown rot of rice caused by Pseudomonas fuscovaginae in Latin America. Plant Dis. 71:592-597.
    • (1987) Plant Dis. , vol.71 , pp. 592-597
    • Zeigler, R.S.1    Alvarez, E.2
  • 48
    • 0005972550 scopus 로고
    • Characteristics of Pseudomonas spp. causing grain discoloration and sheath rot of rice, and associated Pseudomonad epiphytes
    • Zeigler, R. S., and Alvarez, E. 1990. Characteristics of Pseudomonas spp. causing grain discoloration and sheath rot of rice, and associated Pseudomonad epiphytes. Plant Dis. 74:917-922.
    • (1990) Plant Dis. , vol.74 , pp. 917-922
    • Zeigler, R.S.1    Alvarez, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.