Bacterial pathogens of rice in the Kingdom of Cambodia and description of a new pathogen causing a serious sheath rot disease

Plant Pathology

Volumn 59, Issue 5, 2010, Pages 944-953

  Cother, E J ^a,b   Noble, D H ^a   van de Ven, R J ^a   Lanoiselet, V ^b   Ash, G ^d   Vuthy, N ^c   Visarto, P ^c   Stodart, B ^d  

^a NSW DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^b DEPARTMENT OF AGRICULTURE AND FOOD WESTERN AUSTRALIA   (Australia)

^c Cambodian Agricultural Research and Development Institute   (Cambodia)

^d CHARLES STURT UNIVERSITY   (Australia)

Author keywords

Acidovorax; Burkholderia; Fatty acid analysis; Oryza sativa; Pantoea; Pseudomonas

Indexed keywords

BACTERIAL DISEASE; BACTERIUM; DATABASE; DISEASE INCIDENCE; DISEASE PREVALENCE; FATTY ACID; GENETIC ANALYSIS; NEW RECORD; PATHOGEN; RICE; SYMPTOM;

CAMBODIA;

ACIDOVORAX; ACIDOVORAX AVENAE SUBSP. AVENAE; BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA GLADIOLI; ORYZA SATIVA; PANTOEA; PANTOEA ANANATIS; PSEUDOMONAS; PSEUDOMONAS FULVA; PSEUDOMONAS FUSCOVAGINAE; PSEUDOMONAS PARAFULVA; PSEUDOMONAS PUTIDA;

EID: 77956292632     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2010.02310.x     Document Type: Article

References (23)

1. Altschul SF, Madden TL, Schaeffer AA. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997, 25:3389-402.
2. Azegami K. Burkholderia spp. associated with rice. Seed Health and Seed-Associated Microorganisms for Rice Disease Management 2001, Mew TWCottyn B. eds, Los Banos, Philippines, IRRI, Limited Proceedings No. 6
3. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank. Nucleic Acids Research 2008, 36:D25-30. Database issue
4. Chun J, Lee JH, Jung Y. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. International Journal of Systematic and Evolutionary Microbiology 2007, 57:2259-61.
5. Cother EJ, Stodart B, Noble DH, Reinke R, van de Ven RJ. Polyphasic identification of Pseudomonas fuscovaginae causing sheath and glume lesions on rice in Australia. Australasian Plant Pathology 2009, 38:247-61.
6. Cottyn B, Cerez MT, Van Outryve MF, Barroga J, Swings J, Mew TW. Bacterial diseases of rice. I. Pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines. Plant Disease 1996a, 80:429-37.
7. Cottyn B, Van Outryve MF, Cerez MT, De Cleene M, Swings J, Mew TW. Bacterial diseases of rice. II. Characterization of pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines. Plant Disease 1996b, 80:438-45.
8. Cottyn B, Regalado E, Mew TW, Swings J. Bacterial population associated with rice seed in the tropical environment. Phytopathology 2001, 91:282-92.
9. Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-80.
10. Kawaradani M, Okada K, Kusakari S. New selective medium for isolation of Burkholderia glumae from rice seeds. Journal of General Plant Pathology 2000, 66:234-7.
11. Pearson WR, Lipman DJ. Improved tools for biological sequence analysis. Proceedings of the National Academy of Sciences, USA 1988, 85:2444-8.
12. Rott P, Notteghem JL, Frossard P. Identification and characterization of Pseudomonas fuscovaginae, the causal agent of bacterial sheath brown rot, from Madagascar and other countries. Plant Disease 1989, 73:133-7.
13. Sacchi CT, Whitney AM, Mayer LW. Sequencing of 16S rRNA gene: a rapid tool for identification of Bacillus anthracis. Emerging Infectious Diseases 2002, 8:1117-23.
14. Samnang C. The Rice Industry in Cambodia 2004, Phnom Penh, Cambodia, Economic Institute of Cambodia, Special Report
15. Song WY, Kang MH, Kim HM. Current status of bacterial brown stripe of rice caused by Acidovorax avenae subsp. avenae. Plant Disease and Agriculture 1999, 5:69-76.
16. Song WY, Kim HM, Hwang CY, Schaad NW. Detection of Acidovorax avenae spp. avenae in rice seeds using BIO-PCR. Journal of Phytopathology 2004, 152:667-76.
17. Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 1993, 10:512-26.
18. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-9.
19. Tanii A, Miyajima K, Akita T. The sheath brown rot disease of rice plant and its causal bacterium, Pseudomonas fuscovaginae. Annals of the Phytopathological Society of Japan 1976, 42:540-8.
20. Uchino M, Shida O, Uchimura T, Komagata K. Recharacterisation of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pesudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp.nov. Journal of General and Applied Microbiology 2001, 47:247-61.
21. Xie G, Soad A, Swings J, Mew TW. Diversity of gram negative bacteria antagonistic against major pathogens of rice from rice seed in the tropic environment. Journal of Zhejiang University Science 2003, 4:463-8.
22. Zeigler RS, Alvarez E. Bacterial sheath brown rot of rice caused by Pseudomonas fuscovaginae in Latin America. Plant Disease 1987, 71:592-7.
23. Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 2000, 7:203-14.