메뉴 건너뛰기




Volumn 26, Issue , 2014, Pages 185-193

Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States

Author keywords

Influenza in birds; Phylogeography; Southwestern United States

Indexed keywords

INFLUENZA VIRUS HEMAGGLUTININ;

EID: 84902952780     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.05.029     Document Type: Article
Times cited : (12)

References (52)
  • 3
    • 84874534890 scopus 로고    scopus 로고
    • Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution
    • Baele G., Lemey P., Vansteelandt S. Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution. BMC Bioinformatics 2013, 14:85.
    • (2013) BMC Bioinformatics , vol.14 , pp. 85
    • Baele, G.1    Lemey, P.2    Vansteelandt, S.3
  • 7
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
    • Bielejec F., Rambaut A., Suchard M.A., Lemey P. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 2011, 27:2910-2912.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 8
    • 84902961673 scopus 로고    scopus 로고
    • Central Flyway, 2013a. U.S. fish and wildlife service.
    • Central Flyway, 2013a. U.S. fish and wildlife service. http://www.central.flyways.us.
  • 9
    • 57049130912 scopus 로고    scopus 로고
    • Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds
    • Chen R., Holmes E.C. Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds. Virology 2009, 383:156-161.
    • (2009) Virology , vol.383 , pp. 156-161
    • Chen, R.1    Holmes, E.C.2
  • 10
    • 84887106169 scopus 로고    scopus 로고
    • Prevalence of avian paramyxovirus 1 and avian influenza virus in double-crested cormorants (Phalacrocorax auritus) in eastern North America
    • Cross T.A., Arsnoe D.M., Minnis R.B., King D.T., Swafford S., Pedersen K., Owen J.C. Prevalence of avian paramyxovirus 1 and avian influenza virus in double-crested cormorants (Phalacrocorax auritus) in eastern North America. J. Wildl. Dis. 2013, 49:965-977.
    • (2013) J. Wildl. Dis. , vol.49 , pp. 965-977
    • Cross, T.A.1    Arsnoe, D.M.2    Minnis, R.B.3    King, D.T.4    Swafford, S.5    Pedersen, K.6    Owen, J.C.7
  • 13
    • 84863719404 scopus 로고    scopus 로고
    • Genetic structure of Pacific Flyway avian influenza viruses is shaped by geographic location, host species, and sampling period
    • Girard Y.A., Runstadler J.A., Aldehoff F., Boyce W. Genetic structure of Pacific Flyway avian influenza viruses is shaped by geographic location, host species, and sampling period. Virus Genes 2012, 44:415-428.
    • (2012) Virus Genes , vol.44 , pp. 415-428
    • Girard, Y.A.1    Runstadler, J.A.2    Aldehoff, F.3    Boyce, W.4
  • 15
    • 84871958581 scopus 로고    scopus 로고
    • Where do avian influenza viruses meet in the Americas?
    • Gonzalez-Reicheabc A.S., Perez D.R. Where do avian influenza viruses meet in the Americas?. Avian Dis. 2012, 56:1025-1033.
    • (2012) Avian Dis. , vol.56 , pp. 1025-1033
    • Gonzalez-Reicheabc, A.S.1    Perez, D.R.2
  • 16
    • 33745200047 scopus 로고    scopus 로고
    • European flyway permeability and abmigration in Teal Anas crecca, an analysis based on ringing recoveries
    • Guillemain M., Sadoul N., Simon G. European flyway permeability and abmigration in Teal Anas crecca, an analysis based on ringing recoveries. Ibis 2005, 147:688-696.
    • (2005) Ibis , vol.147 , pp. 688-696
    • Guillemain, M.1    Sadoul, N.2    Simon, G.3
  • 17
    • 84856631939 scopus 로고    scopus 로고
    • Presence of avian influenza viruses in waterfowl and wetlands during summer 2010 in California: are resident birds a potential reservoir?
    • Henaux V., Samuel M.D., Dusek R.J., Fleskes J.P., Ip H.S. Presence of avian influenza viruses in waterfowl and wetlands during summer 2010 in California: are resident birds a potential reservoir?. PLoS ONE 2012, 7:e31471.
    • (2012) PLoS ONE , vol.7
    • Henaux, V.1    Samuel, M.D.2    Dusek, R.J.3    Fleskes, J.P.4    Ip, H.S.5
  • 20
    • 0035559445 scopus 로고    scopus 로고
    • Universal primer set for the full-length amplification of all influenza A viruses
    • Hoffmann E., Stech J., Guan Y., Webster R.G., Perez D.R. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 2001, 146:2275-2289.
    • (2001) Arch. Virol. , vol.146 , pp. 2275-2289
    • Hoffmann, E.1    Stech, J.2    Guan, Y.3    Webster, R.G.4    Perez, D.R.5
  • 21
    • 1642362771 scopus 로고    scopus 로고
    • The phylogeography of human viruses
    • Holmes E.C. The phylogeography of human viruses. Mol. Ecol. 2004, 13:745-756.
    • (2004) Mol. Ecol. , vol.13 , pp. 745-756
    • Holmes, E.C.1
  • 24
    • 34247645132 scopus 로고    scopus 로고
    • Molecular epidemiologic studies on North American H9 avian influenza virus isolates from waterfowl and shorebirds
    • Jackwood M.W., Stallknecht D.E. Molecular epidemiologic studies on North American H9 avian influenza virus isolates from waterfowl and shorebirds. Avian Dis. 2007, 51:448-450.
    • (2007) Avian Dis. , vol.51 , pp. 448-450
    • Jackwood, M.W.1    Stallknecht, D.E.2
  • 25
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 26
    • 54849419690 scopus 로고    scopus 로고
    • Genetic evidence of intercontinental movement of avian influenza in a migratory bird: the northern pintail (Anas acuta)
    • Koehler A.V., Pearce J.M., Flint P.L., Franson J.C., Ip H.S. Genetic evidence of intercontinental movement of avian influenza in a migratory bird: the northern pintail (Anas acuta). Mol. Ecol. 2008, 17:4754-4762.
    • (2008) Mol. Ecol. , vol.17 , pp. 4754-4762
    • Koehler, A.V.1    Pearce, J.M.2    Flint, P.L.3    Franson, J.C.4    Ip, H.S.5
  • 35
    • 84862908923 scopus 로고    scopus 로고
    • Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics
    • Li W.L., Drummond A.J. Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics. Mol. Biol. Evol. 2012, 29:751-761.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 751-761
    • Li, W.L.1    Drummond, A.J.2
  • 36
    • 84902995435 scopus 로고    scopus 로고
    • Pacific Flyway, Audubon society.
    • Pacific Flyway, 2013b. Audubon society. http://www.conservation.audubon.org/pacific-flyway.
    • (2013)
  • 37
    • 42649136257 scopus 로고    scopus 로고
    • Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
    • Parker J., Rambaut A., Pybus O.G. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect. Genet. Evol. 2008, 8:239-246.
    • (2008) Infect. Genet. Evol. , vol.8 , pp. 239-246
    • Parker, J.1    Rambaut, A.2    Pybus, O.G.3
  • 38
    • 75149194303 scopus 로고    scopus 로고
    • Limited evidence of trans-hemispheric movement of avian influenza viruses among contemporary North American shorebird isolates
    • Pearce J.M., Ramey A.M., Ip H.S., Gill R.E. Limited evidence of trans-hemispheric movement of avian influenza viruses among contemporary North American shorebird isolates. Virus Res. 2010, 148:44-50.
    • (2010) Virus Res. , vol.148 , pp. 44-50
    • Pearce, J.M.1    Ramey, A.M.2    Ip, H.S.3    Gill, R.E.4
  • 39
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 41
    • 84902963248 scopus 로고    scopus 로고
    • FigTree.
    • Rambaut, A., 2013. FigTree. http://www.tree.bio.ed.ac.uk/software/figtree/.
    • (2013)
    • Rambaut, A.1
  • 43
    • 80053189961 scopus 로고    scopus 로고
    • Evidence for limited exchange of avian influenza viruses between seaducks and dabbling ducks at Alaska Peninsula coastal lagoons
    • Ramey A.M., Pearce J.M., Reeves A.B., Franson J.C., Petersen M.R., Ip H.S. Evidence for limited exchange of avian influenza viruses between seaducks and dabbling ducks at Alaska Peninsula coastal lagoons. Arch. Virol. 2011, 156:1813-1821.
    • (2011) Arch. Virol. , vol.156 , pp. 1813-1821
    • Ramey, A.M.1    Pearce, J.M.2    Reeves, A.B.3    Franson, J.C.4    Petersen, M.R.5    Ip, H.S.6
  • 44
    • 77958481161 scopus 로고    scopus 로고
    • At the intersection of public-health informatics and bioinformatics: using advanced web technologies for phylogeography
    • Scotch M., Mei C., Brandt C., Sarkar I.N., Cheung K. At the intersection of public-health informatics and bioinformatics: using advanced web technologies for phylogeography. Epidemiology 2010, 21:764-768.
    • (2010) Epidemiology , vol.21 , pp. 764-768
    • Scotch, M.1    Mei, C.2    Brandt, C.3    Sarkar, I.N.4    Cheung, K.5
  • 45
    • 84902985780 scopus 로고    scopus 로고
    • Looking for birds in the Southwest? Follow the Water. Desert USA.
    • Sharp, J.W., 2012. Looking for birds in the Southwest? Follow the Water. Desert USA. http://www.desertusa.com/mag08/jun08/birds-in-the-southwest.html.
    • (2012)
    • Sharp, J.W.1
  • 46
    • 27744502707 scopus 로고    scopus 로고
    • Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation
    • Spackman E., Stallknecht D.E., Slemons R.D., Winker K., Suarez D.L., Scott M., Swayne D.E. Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation. Virus Res. 2005, 114:89-100.
    • (2005) Virus Res. , vol.114 , pp. 89-100
    • Spackman, E.1    Stallknecht, D.E.2    Slemons, R.D.3    Winker, K.4    Suarez, D.L.5    Scott, M.6    Swayne, D.E.7
  • 48
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A., Ludwig T., Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 2005, 21:456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 49
    • 0032922718 scopus 로고    scopus 로고
    • Phylogenetic analysis of H7 avian influenza viruses isolated from the live bird markets of the Northeast United States
    • Suarez D.L., Garcia M., Latimer J., Senne D., Perdue M. Phylogenetic analysis of H7 avian influenza viruses isolated from the live bird markets of the Northeast United States. J. Virol. 1999, 73:3567-3573.
    • (1999) J. Virol. , vol.73 , pp. 3567-3573
    • Suarez, D.L.1    Garcia, M.2    Latimer, J.3    Senne, D.4    Perdue, M.5
  • 50
    • 84902988629 scopus 로고
    • Factors influencing bird populations in southwestern riparian forests. Management of western forests and grasslands for non-game birds USDA. Forest Service Gen Tech Report
    • Szaro, R.C., 1980. Factors influencing bird populations in southwestern riparian forests. Management of western forests and grasslands for non-game birds USDA. Forest Service Gen Tech Report, pp. 403-418.
    • (1980) , pp. 403-418
    • Szaro, R.C.1
  • 51
    • 3543116592 scopus 로고    scopus 로고
    • Matrix gene of influenza a viruses isolated from wild aquatic birds: ecology and emergence of influenza a viruses
    • Widjaja L., Krauss S.L., Webby R.J., Xie T., Webster R.G. Matrix gene of influenza a viruses isolated from wild aquatic birds: ecology and emergence of influenza a viruses. J. Virol. 2004, 78:8771-8779.
    • (2004) J. Virol. , vol.78 , pp. 8771-8779
    • Widjaja, L.1    Krauss, S.L.2    Webby, R.J.3    Xie, T.4    Webster, R.G.5
  • 52
    • 79958842076 scopus 로고    scopus 로고
    • Extensive geographic mosaicism in avian influenza viruses from gulls in the northern hemisphere
    • Wille M., Robertson G.J., Whitney H., Bishop M.A., Runstadler J.A., Lang A.S. Extensive geographic mosaicism in avian influenza viruses from gulls in the northern hemisphere. PLoS ONE 2011, 6:e20664.
    • (2011) PLoS ONE , vol.6
    • Wille, M.1    Robertson, G.J.2    Whitney, H.3    Bishop, M.A.4    Runstadler, J.A.5    Lang, A.S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.