Sensitive colorimetric biosensing for methylation analysis of p16/CDKN2 promoter with hyperbranched rolling circle amplification

Biosensors and Bioelectronics

Volumn 61, Issue , 2014, Pages 593-597

  Geng, Yao ^a,b   Wu, Jie ^b   Shao, Lijia ^a   Yan, Feng ^a   Ju, Huangxian ^b  

^a JIANGSU CANCER HOSPITAL   (China)

^b NANJING UNIVERSITY   (China)

Author keywords

Biosensing; Breast cancer; Colorimetric detection; Hyperbranched rolling circle amplification; Methylation analysis; P16 CDKN2 promoter

Indexed keywords

ALKYLATION; COLOR; COLORIMETRY; DIAGNOSIS; DISEASES; DNA; METHYLATION;

BIOSENSING; BREAST CANCER; COLORIMETRIC DETECTION; METHYLATION ANALYSIS; P16/CDKN2 PROMOTER; ROLLING CIRCLE AMPLIFICATIONS;

COLORIMETRIC ANALYSIS;

CYCLIN DEPENDENT KINASE INHIBITOR; CYCLIN DEPENDENT KINASE INHIBITOR 2; DNA; PROTEIN P16; UNCLASSIFIED DRUG; CYCLIN DEPENDENT KINASE INHIBITOR 2A;

ACCURACY; ARTICLE; BREAST CANCER; CANCER PATIENT; COLORIMETRIC BIOSENSING METHOD; COLORIMETRY; CONTROLLED STUDY; DNA METHYLATION; GENE AMPLIFICATION; GENETIC PROCEDURES; HUMAN; HYPERBRANCHED ROLLING CYCLE AMPLIFICATION; MOLECULAR DYNAMICS; PROCESS DEVELOPMENT; PROCESS OPTIMIZATION; PROMOTER REGION; PROTEIN DETERMINATION; PROTEIN FUNCTION; QUANTITATIVE ANALYSIS; SENSITIVITY ANALYSIS; SEQUENCE ANALYSIS; BREAST; BREAST TUMOR; CHEMISTRY; DEVICES; EQUIPMENT DESIGN; EVALUATION STUDY; FEMALE; GENETICS; METABOLISM; MIDDLE AGED; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; SENSITIVITY AND SPECIFICITY;

BASE SEQUENCE; BIOSENSING TECHNIQUES; BREAST; BREAST NEOPLASMS; COLORIMETRY; CYCLIN-DEPENDENT KINASE INHIBITOR P16; DNA; DNA METHYLATION; EQUIPMENT DESIGN; FEMALE; HUMANS; MIDDLE AGED; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PROMOTER REGIONS, GENETIC; SENSITIVITY AND SPECIFICITY;

EID: 84902689428     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2014.06.010     Document Type: Article

References (33)

1. Alix-Panabieres C., Schwarzenbach H., Pantel K. Ann. Rev. Med. 2011, 63:199-215.
2. Bailey V.J., Easwaran H., Zhang Y., Griffiths E., Belinsky S.A., Herman J.G., Baylin S.B., Carraway H.E., Wang T.H. Genome Res. 2009, 19:1455-1461.
3. Cao A., Zhang C.Y. Anal. Chem. 2012, 84:6199-6205.
4. Chan K.C., Lai P.B., Mok T.S., Chan H.L., Ding C., Yeung S.W., Lo Y.M. Clin. Chem. 2008, 54:1528-1536.
5. Cheng W., Ding L., Chen Y., Yan F., Ju H., Yin Y. Chem. Commun. 2010, 46:6720-6722.
6. Cheng Y., Zhang X., Li Z., Jiao X., Wang Y., Zhang Y. Angew. Chem. Int. Ed. 2009, 48:3268-3272.
7. Eads C.A., Danenberg K.D., Kawakami K., Saltz L.B., Blake C., Shibata D., Danenberg P.V., Laird P.W. Nucleic Acids Res. 2000, 28:e32.
8. Frommer M., McDonald L.E., Millar D.S., Collis C.M., Watt F., Grigg G.W., Molloy P.L., Paul C.L. Proc. Natl. Acad. Sci. USA 1992, 89:1827-1831.
9. Gilbert H.F., O'Leary M.H. Clin. Microbiol. 2005, 43:2339-2344.
10. Gonzalez-Zulueta M., Bender C.M., Yang A.S., Nguyen T., Beart R.W., Van Tornout J.M., Jones P.A. Cancer Res. 1995, 55:4531-4535.
11. Herman J.G., Graff J.R., Myohanen S., Nelkin B.D., Baylin S.B. Proc. Natl. Acad. Sci. USA 1996, 93:9821-9826.
12. Holliday R., Grigg G.W. Mutat. Res. 1993, 285:61-67.
13. Hu J., Zhang C.Y. Biosens. Bioelectron. 2012, 3:451-457.
14. Jaenisch R., Bird A. Nat. Genet. 2003, 33:245-254.
15. Leakey T.I., Zielinski J., Siegfried R.N., Siegel E.R., Fan C.Y., Cooney C.A. Nucleic Acids Res. 2008, 36:e64.
16. Lim B., Jiang M.J., Camargo P.H.C., Cho E.C., Tao J., Lu X.M., Zhu Y.M., Xia Y.N. Science 2009, 324:1302-1305.
17. Lizardi P.M., Huang X., Zhu Z., Bray-Ward P., Thomas D.C., Ward D.C. Nat. Genet. 1998, 19:225-232.
18. Lorente A., Mueller W., Urdangarín E., Lázcoz P., von Deimling A., Castresana J.S. BMC Cancer 2008, 8:61.
19. Mao R., Chou L.S. Clin. Chem. 2010, 56:1050-1052.
20. Merlo A., Herman J.G., Mao L., Lee D.J., Gabrielson E., Burger P.C., Baylin S.B., Sidransky D. Nat. Med. 1995, 1:686-692.
21. Nakayama H., Hibi K., Taguchi M., Takase T., Yamazaki T., Kasai Y., Ito K., Akiyama S., Nakao A. Cancer Lett. 2002, 188:115-119.
22. Ostrow K.L., Hoque M.O., Loyo M., Brait M., Greenberg A., Siegfried J.M., Grandis J.R., Gaither D.A., Bigbee W.L., Rom W., Sidransky D. Clin. Cancer Res. 2010, 16:3463-3472.
23. Qi X., Bakht S., Devos K.M., Gale M.D., Osbourn A. Nucleic Acids Res. 2001, 29:e116.
24. Schatz P., Distler J., Berlin K., Schuster M. Nucleic Acids Res. 2006, 34:e59.
25. Schuebel K.E., Chen W., Cope L., Glöckner S.C., Suzuki H., Yi J.M., Chan T.A., Van N.L., Van C.W., van den Bosch S., van Engeland M., Ting A.H., Jair K., Yu W., Toyota M., Imai K., Ahuja N., Herman J.G., Baylin S.B. PLoS Genet. 2007, 3:1709-1723.
26. Schwarzenbach H., Hoon D.S., Pantel K. Nat. Rev. Cancer 2011, 11:426-437.
27. Serrano M., Hannon G.J., Beach D. Nature 1993, 366:704-707.
28. Shaw R.J., Liloglou T., Rogers S.N., Brown J.S., Vaughan E.D., Lowe D., Field J.K., Risk J.M. Br. J. Cancer 2006, 27:561-568.
29. Su J., Yan H., Wei Y., Liu H., Liu H., Wang F., Lv J., Wu Q., Zhang Y. Nucleic Acids Res. 2013, 7:e4.
30. van den Boom D., Ehrich M. Methods Mol. Biol. 2009, 507:207-227.
31. von Kanel T., Gerber D., Schaller A., Baumer A., Wey E., Jackson C.B., Gisler F.M., Heinimann K., Gallati S. Clin. Chem. 2010, 56:1098-1106.
32. Wu Z., Luo J., Ge Q., Lu Z. Biosens. Bioelectron. 2008, 23:1333-1339.
33. Zhang D.Y., Liu B. Expert Rev. Mol. Diagn. 2003, 3:237-248.