-
2
-
-
0030476302
-
Thermodynamic comparison of the salt dependence of natural RNA hairpins and RNA hairpins with non-nucleotide spacers
-
Williams, D. J. and Hall, K. B. (1996) Thermodynamic comparison of the salt dependence of natural RNA hairpins and RNA hairpins with non-nucleotide spacers Biochemistry 35, 14665-14670
-
(1996)
Biochemistry
, vol.35
, pp. 14665-14670
-
-
Williams, D.J.1
Hall, K.B.2
-
3
-
-
20144377893
-
Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction
-
Law, M. J., Chambers, E. J., Katsamba, P. S., Haworth, I. S., and Laird-Offringa, I. A. (2005) Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction Nucleic Acids Res. 33, 2917-2928
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2917-2928
-
-
Law, M.J.1
Chambers, E.J.2
Katsamba, P.S.3
Haworth, I.S.4
Laird-Offringa, I.A.5
-
4
-
-
33847178767
-
A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations
-
Kormos, B. L., Baranger, A. M., and Beveridge, D. L. (2007) A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations J. Struct. Biol. 157, 500-513
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 500-513
-
-
Kormos, B.L.1
Baranger, A.M.2
Beveridge, D.L.3
-
5
-
-
0026713783
-
Interaction of N-terminal domain of U1A protein with an RNA stem/loop
-
Hall, K. B. and Stump, W. T. (1992) Interaction of N-terminal domain of U1A protein with an RNA stem/loop Nucleic Acids Res. 20, 4283-4290
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 4283-4290
-
-
Hall, K.B.1
Stump, W.T.2
-
6
-
-
0024851833
-
Identification of the RNA binding segment of human U1 A protein and definition of its binding site on U1 snRNA
-
Scherly, D., Boelens, W., van Venrooij, W. J., Dathan, N. A., Hamm, J., and Mattaj, I. W. (1989) Identification of the RNA binding segment of human U1 A protein and definition of its binding site on U1 snRNA EMBO J. 8, 4163-4170
-
(1989)
EMBO J.
, vol.8
, pp. 4163-4170
-
-
Scherly, D.1
Boelens, W.2
Van Venrooij, W.J.3
Dathan, N.A.4
Hamm, J.5
Mattaj, I.W.6
-
7
-
-
0025139999
-
Analysis of the in vitro binding of A and B″ snRNP proteins to U1 and U2 snRNAs using mutated A and B″ proteins
-
Boelens, W. C., Scherly, D., Mattaj, I. W., and van Venrooij, W. J. (1990) Analysis of the in vitro binding of A and B″ snRNP proteins to U1 and U2 snRNAs using mutated A and B″ proteins Mol. Biol. Rep. 14, 159
-
(1990)
Mol. Biol. Rep.
, vol.14
, pp. 159
-
-
Boelens, W.C.1
Scherly, D.2
Mattaj, I.W.3
Van Venrooij, W.J.4
-
8
-
-
0025127420
-
Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA
-
Lutz-Freyermuth, C., Query, C. C., and Keene, J. D. (1990) Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA Proc. Natl. Acad. Sci. U.S.A. 87, 6393-6397
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 6393-6397
-
-
Lutz-Freyermuth, C.1
Query, C.C.2
Keene, J.D.3
-
9
-
-
0028965970
-
An RBD that does not bind RNA: NMR secondary structure determination and biochemical properties of the C-terminal RNA binding domain from the human U1A protein
-
Lu, J. and Hall, K. B. (1995) An RBD that does not bind RNA: NMR secondary structure determination and biochemical properties of the C-terminal RNA binding domain from the human U1A protein J. Mol. Biol. 247, 739-752
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 739-752
-
-
Lu, J.1
Hall, K.B.2
-
10
-
-
0024986753
-
Binding specificity determinants of U1A and U2B″ proteins
-
Scherly, D., Boelens, W., Dathan, N. A., Kambach, C., van Venrooij, W. J., and Mattaj, I. W. (1990) Binding specificity determinants of U1A and U2B″ proteins Mol. Biol. Rep. 14, 181-182
-
(1990)
Mol. Biol. Rep.
, vol.14
, pp. 181-182
-
-
Scherly, D.1
Boelens, W.2
Dathan, N.A.3
Kambach, C.4
Van Venrooij, W.J.5
Mattaj, I.W.6
-
11
-
-
80052305240
-
Human U2B″ protein binding to snRNA stemloops
-
Williams, S. G. and Hall, K. B. (2011) Human U2B″ protein binding to snRNA stemloops Biophys. Chem. 159, 82-89
-
(2011)
Biophys. Chem.
, vol.159
, pp. 82-89
-
-
Williams, S.G.1
Hall, K.B.2
-
12
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl, M. C., Will, C. L., and Lührmann, R. (2009) The spliceosome: Design principles of a dynamic RNP machine Cell 136, 701-718
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Lührmann, R.3
-
13
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztányi, Z., Csizmok, V., Tompa, P., and Simon, I. (2005) IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content Bioinformatics 21, 3433-3434
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
14
-
-
0032514483
-
Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA
-
Price, S. R., Evans, P. R., and Nagai, K. (1998) Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA Nature 394, 645-650
-
(1998)
Nature
, vol.394
, pp. 645-650
-
-
Price, S.R.1
Evans, P.R.2
Nagai, K.3
-
15
-
-
0025027552
-
The U2B″ RNP motif as a site of protein-protein interaction
-
Scherly, D., Dathan, N. A., Boelens, W., van Venrooij, W. J., and Mattaj, I. W. (1990) The U2B″ RNP motif as a site of protein-protein interaction EMBO J. 9, 3675-3681
-
(1990)
EMBO J.
, vol.9
, pp. 3675-3681
-
-
Scherly, D.1
Dathan, N.A.2
Boelens, W.3
Van Venrooij, W.J.4
Mattaj, I.W.5
-
16
-
-
0025971909
-
Leucine periodicity of U2 small nuclear ribonucleoprotein particle (snRNP) A′ protein is implicated in snRNP assembly via protein-protein interactions
-
Fresco, L. D., Harper, D. S., and Keene, J. D. (1991) Leucine periodicity of U2 small nuclear ribonucleoprotein particle (snRNP) A′ protein is implicated in snRNP assembly via protein-protein interactions Mol. Cell. Biol. 11, 1578-1589
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 1578-1589
-
-
Fresco, L.D.1
Harper, D.S.2
Keene, J.D.3
-
17
-
-
0026086816
-
Recognition of U1 and U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B″ protein and through interactions with U2 snRNP-A′ protein
-
Bentley, R. C. and Keene, J. D. (1991) Recognition of U1 and U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B″ protein and through interactions with U2 snRNP-A′ protein Mol. Cell. Biol. 11, 1829-1839
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 1829-1839
-
-
Bentley, R.C.1
Keene, J.D.2
-
18
-
-
0031788566
-
Target discrimination by RNA-binding proteins: Role of the ancillary protein U2A′ and a critical leucine residue in differentiating the RNA-binding specificity of spliceosomal proteins U1A and U2B″
-
Rimmele, M. E. and Belasco, J. G. (1998) Target discrimination by RNA-binding proteins: Role of the ancillary protein U2A′ and a critical leucine residue in differentiating the RNA-binding specificity of spliceosomal proteins U1A and U2B″ RNA 4, 1386-1396
-
(1998)
RNA
, vol.4
, pp. 1386-1396
-
-
Rimmele, M.E.1
Belasco, J.G.2
-
19
-
-
0028266440
-
The Drosophila sex determination gene snf encodes a nuclear protein with sequence and functional similarity to the mammalian U1A snRNP protein
-
Flickinger, T. W. and Salz, H. K. (1994) The Drosophila sex determination gene snf encodes a nuclear protein with sequence and functional similarity to the mammalian U1A snRNP protein Genes Dev. 8, 914-925
-
(1994)
Genes Dev.
, vol.8
, pp. 914-925
-
-
Flickinger, T.W.1
Salz, H.K.2
-
20
-
-
0024443874
-
Functional analysis of mutant Xenopus U2 snRNAs
-
Hamm, J., Dathan, N. A., and Mattaj, I. W. (1989) Functional analysis of mutant Xenopus U2 snRNAs Cell 59, 159-169
-
(1989)
Cell
, vol.59
, pp. 159-169
-
-
Hamm, J.1
Dathan, N.A.2
Mattaj, I.W.3
-
21
-
-
0024788786
-
U2 snRNA sequences that bind U2-specific proteins are dispensable for the function of U2 snRNP in splicing
-
Pan, Z. Q. and Prives, C. (1989) U2 snRNA sequences that bind U2-specific proteins are dispensable for the function of U2 snRNP in splicing Genes Dev. 3, 1887-1898
-
(1989)
Genes Dev.
, vol.3
, pp. 1887-1898
-
-
Pan, Z.Q.1
Prives, C.2
-
22
-
-
0035883150
-
The Drosophila U2 snRNP protein U2A′ has an essential function that is SNF/U2B″ independent
-
Nagengast, A. A. and Salz, H. K. (2001) The Drosophila U2 snRNP protein U2A′ has an essential function that is SNF/U2B″ independent Nucleic Acids Res. 29, 3841-3847
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3841-3847
-
-
Nagengast, A.A.1
Salz, H.K.2
-
23
-
-
0029847221
-
In vitro reconstitution of mammalian U1 snRNPs active in splicing: The U1-C protein enhances the formation of early (E) spliceosomal complexes
-
Will, C. L., Rümpler, S., Klein Gunnewiek, J., van Venrooij, W. J., and Lührmann, R. (1996) In vitro reconstitution of mammalian U1 snRNPs active in splicing: The U1-C protein enhances the formation of early (E) spliceosomal complexes Nucleic Acids Res. 24, 4614-4623
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4614-4623
-
-
Will, C.L.1
Rümpler, S.2
Klein Gunnewiek, J.3
Van Venrooij, W.J.4
Lührmann, R.5
-
24
-
-
0027956671
-
Interaction of RNA hairpins with the human U1A N-terminal RNA binding domain
-
Hall, K. B. (1994) Interaction of RNA hairpins with the human U1A N-terminal RNA binding domain Biochemistry 33, 10076-10088
-
(1994)
Biochemistry
, vol.33
, pp. 10076-10088
-
-
Hall, K.B.1
-
25
-
-
77953106274
-
Coevolution of Drosophila snf protein and its snRNA targets
-
Williams, S. G. and Hall, K. B. (2010) Coevolution of Drosophila snf protein and its snRNA targets Biochemistry 49, 4571-4582
-
(2010)
Biochemistry
, vol.49
, pp. 4571-4582
-
-
Williams, S.G.1
Hall, K.B.2
-
26
-
-
33745598322
-
The evergrowing world of small nuclear ribonucleoproteins
-
In, 3 rd ed. pp, Cold Spring Harbor Monograph Archive, Cold Spring Harbor Laboratory Press, Plainview, NY.
-
Tycowski, K. T., Kolev, N. G., Conrad, N. K., Fok, V., and Steitz, J. A. (2006) The evergrowing world of small nuclear ribonucleoproteins. In The RNA World, 3 rd ed., pp 327-368, Cold Spring Harbor Monograph Archive, Cold Spring Harbor Laboratory Press, Plainview, NY.
-
(2006)
The RNA World
, pp. 327-368
-
-
Tycowski, K.T.1
Kolev, N.G.2
Conrad, N.K.3
Fok, V.4
Steitz, J.A.5
-
27
-
-
0032311808
-
Prediction of binding energetics from structure using empirical parameterization
-
Baker, B. M. and Murphy, K. P. (1998) Prediction of binding energetics from structure using empirical parameterization Methods Enzymol. 295, 294-315
-
(1998)
Methods Enzymol.
, vol.295
, pp. 294-315
-
-
Baker, B.M.1
Murphy, K.P.2
-
28
-
-
33845937672
-
Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: Application to adaptor protein complexes in cell signaling
-
Houtman, J. C. D., Brown, P. H., Bowden, B., Yamaguchi, H., Appella, E., Samelson, L. E., and Schuck, P. (2007) Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: Application to adaptor protein complexes in cell signaling Protein Sci. 16, 30-42
-
(2007)
Protein Sci.
, vol.16
, pp. 30-42
-
-
Houtman, J.C.D.1
Brown, P.H.2
Bowden, B.3
Yamaguchi, H.4
Appella, E.5
Samelson, L.E.6
Schuck, P.7
-
29
-
-
82455179086
-
Studying the allosteric energy cycle by isothermal titration calorimetry
-
Martinez-Julvez, M., Abian, O., Vega, S., Medina, M., and Velazquez-Campoy, A. (2012) Studying the allosteric energy cycle by isothermal titration calorimetry Methods Mol. Biol. 796, 53-70
-
(2012)
Methods Mol. Biol.
, vol.796
, pp. 53-70
-
-
Martinez-Julvez, M.1
Abian, O.2
Vega, S.3
Medina, M.4
Velazquez-Campoy, A.5
-
30
-
-
0029911683
-
RNA hairpins with non-nucleotide spacers bind efficiently to the human U1A protein
-
Williams, D. J. and Hall, K. B. (1996) RNA hairpins with non-nucleotide spacers bind efficiently to the human U1A protein J. Mol. Biol. 257, 265-275
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 265-275
-
-
Williams, D.J.1
Hall, K.B.2
-
31
-
-
84902144722
-
Linkage and allostery in snRNP protein:RNA complexes
-
Williams, S. G. and Hall, K. B. (2014) Linkage and allostery in snRNP protein:RNA complexes Biochemistry 53, 3529-3539
-
(2014)
Biochemistry
, vol.53
, pp. 3529-3539
-
-
Williams, S.G.1
Hall, K.B.2
-
32
-
-
84885189866
-
Resurrection of an Urbilaterian U1A/U2B″/SNF protein
-
Williams, S. G., Harms, M. J., and Hall, K. B. (2013) Resurrection of an Urbilaterian U1A/U2B″/SNF protein J. Mol. Biol. 425, 3846-3862
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 3846-3862
-
-
Williams, S.G.1
Harms, M.J.2
Hall, K.B.3
-
33
-
-
84902582259
-
Climbing the vertebrate branch of U1A/U2B″ protein evolution
-
Delaney, K. J., Williams, S. G., Lawler, M., and Hall, K. B. (2014) Climbing the vertebrate branch of U1A/U2B″ protein evolution RNA 10.1261/rna.044255.114
-
(2014)
RNA
-
-
Delaney, K.J.1
Williams, S.G.2
Lawler, M.3
Hall, K.B.4
-
34
-
-
0029994421
-
Identification and characterization of a yeast gene encoding the U2 small nuclear ribonucleoprotein particle B″ protein
-
Tang, J., Abovich, N., and Rosbash, M. (1996) Identification and characterization of a yeast gene encoding the U2 small nuclear ribonucleoprotein particle B″ protein Mol. Cell. Biol. 16, 2787-2795
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 2787-2795
-
-
Tang, J.1
Abovich, N.2
Rosbash, M.3
-
35
-
-
0032476603
-
The yeast U2A′/U2B complex is required for pre-spliceosome formation
-
Caspary, F. and Séraphin, B. (1998) The yeast U2A′/U2B complex is required for pre-spliceosome formation EMBO J. 17, 6348-6358
-
(1998)
EMBO J.
, vol.17
, pp. 6348-6358
-
-
Caspary, F.1
Séraphin, B.2
-
36
-
-
0024788534
-
In vitro reconstitution of functional yeast U2 snRNPs
-
McPheeters, D. S., Fabrizio, P., and Abelson, J. (1989) In vitro reconstitution of functional yeast U2 snRNPs Genes Dev. 3, 2124-2136
-
(1989)
Genes Dev.
, vol.3
, pp. 2124-2136
-
-
McPheeters, D.S.1
Fabrizio, P.2
Abelson, J.3
-
37
-
-
0025268577
-
Human U2 snRNA can function in pre-mRNA splicing in yeast
-
Shuster, E. O. and Guthrie, C. (1990) Human U2 snRNA can function in pre-mRNA splicing in yeast Nature 345, 270-273
-
(1990)
Nature
, vol.345
, pp. 270-273
-
-
Shuster, E.O.1
Guthrie, C.2
-
38
-
-
0029878720
-
VMD: Visual Molecular Dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual Molecular Dynamics J. Mol. Graphics 14.1, 33-38
-
(1996)
J. Mol. Graphics
, vol.141
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
|