Nonconvergence in Bayesian estimation of migration rates

Molecular Ecology Resources

Volumn 14, Issue 4, 2014, Pages 726-733

  Meirmans, Patrick G ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

Assignment tests; bayesass; Convergence; Markov chain Monte Carlo; Microsatellites; Migration

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; BIOSTATISTICS; POPULATION GENETICS; POPULATION MIGRATION; PROCEDURES; RAT;

ANIMAL MIGRATION; ANIMALS; BIOSTATISTICS; GENETICS, POPULATION; MICROSATELLITE REPEATS; RATS;

EID: 84902343049     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12216     Document Type: Article

References (20)

1. Abdo Z, Crandall K, Joyce P (2004) Evaluating the performance of likelihood methods for detecting population structure and migration. Molecular Ecology, 13, 837-851.
2. Balloux F (2001) EASYPOP (Version 1.7): a computer program for population genetics simulations. Journal of Heredity, 92, 301-302.
3. Beerli P, Felsenstein J (1999) Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics, 152, 763-773.
4. Faubet P, Waples R, Gaggiotti OE (2007) Evaluating the performance of a multilocus Bayesian method for the estimation of migration rates. Molecular Ecology, 16, 1149-1166.
5. Gilbert KJ, Andrew RL, Bock DG et al. (2012) Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program structure. Molecular Ecology, 21, 4925-4930.
6. Hastings A (1993) Complex interactions between dispersal and dynamics - lessons from coupled logistic equations. Ecology, 74, 1362-1372.
7. Hereward JP, Walter GH, DeBarro PJ, Lowe AJ, Riginos C (2013) Gene flow in the green mirid, Creontiades dilutus (Hemiptera: Miridae), across arid and agricultural environments with different host plant species. Ecology and Evolution, 3, 807-821.
8. Lack JB, Hamilton MJ, Braun JK, Mares MA, Den Bussche RA (2012) Comparative phylogeography of invasive Rattus rattus and Rattus norvegicus in the U.S. reveals distinct colonization histories and dispersal. Biological Invasions, 15, 1067-1087.
9. Manel S, Gaggiotti OE, Waples R (2005) Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology & Evolution, 20, 136-142.
10. Manel S, Joost S, Epperson BK et al. (2010) Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field. Molecular Ecology, 19, 3760-3772.
11. Mardulyn P, Vaesen M-A, Milinkovitch MC (2008) Controlling population evolution in the laboratory to evaluate methods of historical inference. PLoS One, 3, e2960.
12. Marko PB, Hart MW (2011) The complex analytical landscape of gene flow inference. Trends in Ecology & Evolution, 26, 448-456.
13. ST and related measures. Molecular Ecology Resources, 11, 5-18.
14. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4, 347-357.
15. Pritchard J, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
16. Rong J, Xu S, Meirmans PG, Vrieling K (2013) Dissimilarity of contemporary and historical gene flow in a wild carrot (Daucus carota) metapopulation under contrasting levels of human disturbance: implications for risk assessment and management of transgene introgression. Annals of Botany 112, 1361-1370.
17. Spiegelhalter DJ, Best NG, Carlin BP, van der Linde A (2002) Bayesian measures of model complexity and fit. Journal of the Royal Statistical Society Series B (Statistical Methodology), 64, 583-639.
18. ST != 1/(4Nm+1). Heredity, 82, 117-125.
19. Wilson G, Rannala B (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics, 163, 1177-1191.
20. Wright S (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.