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Volumn 22, Issue 7, 2014, Pages 907-915

Exome sequencing in developmental eye disease leads to identification of causal variants in GJA8, CRYGC, PAX6 and CYP1B1

Author keywords

Cataract microcornea; Coloboma; Exome sequencing; Microphthalmia; Peters anomaly

Indexed keywords

CRYGC PROTEIN; CYTOCHROME P450 1B1; GJA8 PROTEIN; STRUCTURAL PROTEIN; TRANSCRIPTION FACTOR PAX6; UNCLASSIFIED DRUG; ABC TRANSPORTER; ABCB6 PROTEIN, HUMAN; CONNEXIN 50; CRYGC PROTEIN, HUMAN; CYP1B1 PROTEIN, HUMAN; EYE PROTEIN; GAMMA CRYSTALLIN; GAP JUNCTION PROTEIN; GDF3 PROTEIN, HUMAN; GROWTH DIFFERENTIATION FACTOR 3; HOMEODOMAIN PROTEIN; PAIRED BOX TRANSCRIPTION FACTOR; REPRESSOR PROTEIN;

EID: 84902340799     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2013.268     Document Type: Article
Times cited : (58)

References (44)
  • 5
    • 0028308664 scopus 로고
    • Mutations at the PAX6 locus are found in heterogeneous anterior segment malformations including Peters' anomaly
    • Hanson IM, Fletcher JM, Jordan T et al: Mutations at the PAX6 locus are found in heterogeneous anterior segment malformations including Peters' anomaly. Nat Genet 1994; 6: 168-173
    • (1994) Nat Genet , vol.6 , pp. 168-173
    • Hanson, I.M.1    Fletcher, J.M.2    Jordan, T.3
  • 7
    • 56149116122 scopus 로고    scopus 로고
    • Anterior segment mesenchymal dysgenesis in a large Australian family is associated with the recurrent 17 bp duplication in PITX3
    • Summers KM, Withers SJ, Gole GA, Piras S, Taylor PJ: Anterior segment mesenchymal dysgenesis in a large Australian family is associated with the recurrent 17 bp duplication in PITX3. Mol Vis 2008; 14: 2010-2015
    • (2008) Mol Vis , vol.14 , pp. 2010-2015
    • Summers, K.M.1    Withers, S.J.2    Gole, G.A.3    Piras, S.4    Taylor, P.J.5
  • 8
    • 77649219694 scopus 로고    scopus 로고
    • FOXE3 plays a significant role in autosomal recessive microphthalmia
    • Reis LM, Tyler RC, Schneider A et al: FOXE3 plays a significant role in autosomal recessive microphthalmia. Am J Med Genet A 2010; 152A: 582-590
    • (2010) Am J Med Genet A. , vol.152 A , pp. 582-590
    • Reis, L.M.1    Tyler, R.C.2    Schneider, A.3
  • 9
    • 79951811386 scopus 로고    scopus 로고
    • A novel, non-stop mutation in FOXE3 causes an autosomal dominant form of variable anterior segment dysgenesis including Peters anomaly
    • Doucette L, Green J, Fernandez B, Johnson GJ, Parfrey P, Young TL: A novel, non-stop mutation in FOXE3 causes an autosomal dominant form of variable anterior segment dysgenesis including Peters anomaly. Eur J Hum Genet 2011; 19: 293-299
    • (2011) Eur J Hum Genet , vol.19 , pp. 293-299
    • Doucette, L.1    Green, J.2    Fernandez, B.3    Johnson, G.J.4    Parfrey, P.5    Young, T.L.6
  • 10
    • 77956969736 scopus 로고    scopus 로고
    • Identification of dominant FOXE3 and PAX6 mutations in patients with congenital cataract and aniridia
    • Bremond-Gignac D, Bitoun P, Reis LM, Copin H, Murray JC, Semina EV: Identification of dominant FOXE3 and PAX6 mutations in patients with congenital cataract and aniridia. Mol Vis 2010; 16: 1705-1711
    • (2010) Mol Vis , vol.16 , pp. 1705-1711
    • Bremond-Gignac, D.1    Bitoun, P.2    Reis, L.M.3    Copin, H.4    Murray, J.C.5    Semina, E.V.6
  • 13
    • 40749090053 scopus 로고    scopus 로고
    • Mutations in BMP4 cause eye, brain, and digit developmental anomalies: Overlap between the BMP4 and hedgehog signaling pathways
    • Bakrania P, Efthymiou M, Klein JC et al: Mutations in BMP4 cause eye, brain, and digit developmental anomalies: Overlap between the BMP4 and hedgehog signaling pathways. Am J Hum Genet 2008; 82: 304-319
    • (2008) Am J Hum Genet , vol.82 , pp. 304-319
    • Bakrania, P.1    Efthymiou, M.2    Klein, J.C.3
  • 14
    • 70350354987 scopus 로고    scopus 로고
    • Novel SOX2 partner-factor domain mutation in a four-generation family
    • Mihelec M, Abraham P, Gibson K et al: Novel SOX2 partner-factor domain mutation in a four-generation family. Eur J Hum Genet 2009; 17: 1417-1422
    • (2009) Eur J Hum Genet , vol.17 , pp. 1417-1422
    • Mihelec, M.1    Abraham, P.2    Gibson, K.3
  • 15
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009; 25: 1754-1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 16
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A et al: The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009; 25: 2078-2079
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 17
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E et al: The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 2010; 20: 1297-1303
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 18
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-Throughput sequencing data
    • Wang K, Li M, Hakonarson H: ANNOVAR: Functional annotation of genetic variants from high-Throughput sequencing data. Nucleic Acids Res 2010; 38: E164
    • (2010) Nucleic Acids Res , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 19
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • DOI 10.1101/gr.176601
    • Ng PC, Henikoff S: Predicting deleterious amino acid substitutions. Genome Res 2001; 11: 863-874. (Pubitemid 32447869
    • (2001) Genome Research , vol.11 , Issue.5 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 20
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, Schmidt S, Peshkin L et al: A method and server for predicting damaging missense mutations. Nat Methods 2010; 7: 248-249
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1    Schmidt, S.2    Peshkin, L.3
  • 21
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates disease-causing potential of sequence alterations
    • Schwarz JM, Rodelsperger C, Schuelke M, Seelow D: MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods 2010; 7: 575-576
    • (2010) Nat Methods , vol.7 , pp. 575-576
    • Schwarz, J.M.1    Rodelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 22
    • 79960763462 scopus 로고    scopus 로고
    • Dbnsfp: A lightweight database of human nonsynonymous SNPs and their functional predictions
    • Liu X, Jian X, Boerwinkle E: DbNSFP: A lightweight database of human nonsynonymous SNPs and their functional predictions. Hum Mutat 2011; 32: 894-899
    • (2011) Hum Mutat , vol.32 , pp. 894-899
    • Liu, X.1    Jian, X.2    Boerwinkle, E.3
  • 23
    • 84868686559 scopus 로고    scopus 로고
    • Diagnostic exome sequencing in persons with severe intellectual disability
    • de Ligt J, Willemsen MH, van Bon BW et al: Diagnostic exome sequencing in persons with severe intellectual disability. N Engl J Med 2012; 367: 1921-1929
    • (2012) N Engl J Med , vol.367 , pp. 1921-1929
    • De Ligt, J.1    Willemsen, M.H.2    Van Bon, B.W.3
  • 24
    • 84865170123 scopus 로고    scopus 로고
    • Next-generation genetic testing for retinitis pigmentosa
    • Neveling K, Collin RW, Gilissen C et al: Next-generation genetic testing for retinitis pigmentosa. Hum Mutat 2012; 33: 963-972
    • (2012) Hum Mutat , vol.33 , pp. 963-972
    • Neveling, K.1    Collin, R.W.2    Gilissen, C.3
  • 25
    • 0032539587 scopus 로고    scopus 로고
    • Congenital eye malformations: Clinical-epidemiological analysis of 1 ,124,654 consecutive births in Spain
    • Bermejo E, Martinez-Frias ML: Congenital eye malformations: Clinical-epidemiological analysis of 1,124,654 consecutive births in Spain. Am J Med Genet 1998; 75: 497-504
    • (1998) Am J Med Genet , vol.75 , pp. 497-504
    • Bermejo, E.1    Martinez-Frias, M.L.2
  • 26
    • 33645115350 scopus 로고    scopus 로고
    • Novel mutations in GJA8 associated with autosomal dominant congenital cataract and microcornea
    • Devi RR, Vijayalakshmi P: Novel mutations in GJA8 associated with autosomal dominant congenital cataract and microcornea. Mol Vis 2006; 12: 190-195
    • (2006) Mol Vis , vol.12 , pp. 190-195
    • Devi, R.R.1    Vijayalakshmi, P.2
  • 28
    • 0037443454 scopus 로고    scopus 로고
    • The molecular genetics of the human i locus and molecular background explain the partial association of the adult i phenotype with congenital cataracts
    • Yu LC, Twu YC, Chou ML et al: The molecular genetics of the human I locus and molecular background explain the partial association of the adult i phenotype with congenital cataracts. Blood 2003; 101: 2081-2088
    • (2003) Blood , vol.101 , pp. 2081-2088
    • Yu, L.C.1    Twu, Y.C.2    Chou, M.L.3
  • 29
    • 70350532910 scopus 로고    scopus 로고
    • Effects of alpha-crystallin on lens cell function and cataract pathology
    • Andley UP: Effects of alpha-crystallin on lens cell function and cataract pathology. Curr Mol Med 2009; 9: 887-892
    • (2009) Curr Mol Med , vol.9 , pp. 887-892
    • Andley, U.P.1
  • 30
    • 77949479057 scopus 로고    scopus 로고
    • Mutation of the bone morphogenetic protein GDF3 causes ocular and skeletal anomalies
    • Ye M, Berry-Wynne KM, Asai-Coakwell M et al: Mutation of the bone morphogenetic protein GDF3 causes ocular and skeletal anomalies. Hum Mol Genet 2010; 19: 287-298
    • (2010) Hum Mol Genet , vol.19 , pp. 287-298
    • Ye, M.1    Berry-Wynne, K.M.2    Asai-Coakwell, M.3
  • 31
    • 84855844763 scopus 로고    scopus 로고
    • ABCB6 mutations cause ocular coloboma
    • Wang L, He F, Bu J et al: ABCB6 mutations cause ocular coloboma. Am J Hum Genet 2012; 90: 40-48
    • (2012) Am J Hum Genet , vol.90 , pp. 40-48
    • Wang, L.1    He, F.2    Bu, J.3
  • 32
    • 84862777314 scopus 로고    scopus 로고
    • ABCB6 is dispensable for erythropoiesis and specifies the new blood group system Langereis
    • Helias V, Saison C, Ballif BA et al: ABCB6 is dispensable for erythropoiesis and specifies the new blood group system Langereis. Nat Genet 2012; 44: 170-173
    • (2012) Nat Genet , vol.44 , pp. 170-173
    • Helias, V.1    Saison, C.2    Ballif, B.A.3
  • 33
    • 51549085464 scopus 로고    scopus 로고
    • Mutations in CYP1B1 cause primary congenital glaucoma by reduction of either activity or abundance of the enzyme
    • Chavarria-Soley G, Sticht H, Aklillu E et al: Mutations in CYP1B1 cause primary congenital glaucoma by reduction of either activity or abundance of the enzyme. Hum Mutat 2008; 29: 1147-1153
    • (2008) Hum Mutat , vol.29 , pp. 1147-1153
    • Chavarria-Soley, G.1    Sticht, H.2    Aklillu, E.3
  • 34
    • 75749114183 scopus 로고    scopus 로고
    • Heterozygous loss-of-function variants in CYP1B1 predispose to primary open-Angle glaucoma
    • Pasutto F, Chavarria-Soley G, Mardin CY et al: Heterozygous loss-of-function variants in CYP1B1 predispose to primary open-Angle glaucoma. Invest Ophthalmol Vis Sci 2010; 51: 249-254
    • (2010) Invest Ophthalmol Vis Sci , vol.51 , pp. 249-254
    • Pasutto, F.1    Chavarria-Soley, G.2    Mardin, C.Y.3
  • 35
    • 34248137450 scopus 로고    scopus 로고
    • RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1
    • Chambers D, Wilson L, Maden M, Lumsden A: RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development 2007; 134: 1369-1383
    • (2007) Development , vol.134 , pp. 1369-1383
    • Chambers, D.1    Wilson, L.2    Maden, M.3    Lumsden, A.4
  • 36
    • 79957693516 scopus 로고    scopus 로고
    • Retinoic acid receptor signaling regulates choroid fissure closure through independent mechanisms in the ventral optic cup and periocular mesenchyme
    • Lupo G, Gestri G, O'Brien M et al: Retinoic acid receptor signaling regulates choroid fissure closure through independent mechanisms in the ventral optic cup and periocular mesenchyme. Proc Natl Acad Sci 2011; 108: 8698-8703
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 8698-8703
    • Lupo, G.1    Gestri, G.2    O'Brien, M.3
  • 37
    • 41149175217 scopus 로고    scopus 로고
    • Mutation of solute carrier SLC16A12 associates with a syndrome combining juvenile cataract with microcornea and renal glucosuria
    • Kloeckener-Gruissem B, Vandekerckhove K, Nurnberg G et al: Mutation of solute carrier SLC16A12 associates with a syndrome combining juvenile cataract with microcornea and renal glucosuria. Am J Hum Genet 2008; 82: 772-779
    • (2008) Am J Hum Genet , vol.82 , pp. 772-779
    • Kloeckener-Gruissem, B.1    Vandekerckhove, K.2    Nurnberg, G.3
  • 38
    • 34548826683 scopus 로고    scopus 로고
    • Mutation of the gap junction protein alpha 8 (GJA8) gene causes autosomal recessive cataract
    • Ponnam SP, Ramesha K, Tejwani S, Ramamurthy B, Kannabiran C: Mutation of the gap junction protein alpha 8 (GJA8) gene causes autosomal recessive cataract. J Med Genet 2007; 44: E85
    • (2007) J Med Genet , vol.44
    • Ponnam, S.P.1    Ramesha, K.2    Tejwani, S.3    Ramamurthy, B.4    Kannabiran, C.5
  • 40
    • 0021174166 scopus 로고
    • Classification of corneal endothelial disorders based on neural crest origin
    • Bahn CF, Falls HF, Varley GA, Meyer RF, Edelhauser HF, Bourne WM: Classification of corneal endothelial disorders based on neural crest origin. Ophthalmology 1984; 91: 558-563. (Pubitemid 14120060
    • (1984) Ophthalmology , vol.91 , Issue.6 , pp. 558-563
    • Bahn, C.F.1    Falls, H.F.2    Varley, G.A.3
  • 44
    • 84855995760 scopus 로고    scopus 로고
    • Targeted 'next-generation' sequencing in anophthalmia and microphthalmia patients confirms SOX2, OTX2 and FOXE3 mutations
    • Jimenez NL, Flannick J, Yahyavi M et al: Targeted 'next-generation' sequencing in anophthalmia and microphthalmia patients confirms SOX2, OTX2 and FOXE3 mutations. BMC Med Genet 2011; 12: 172.
    • (2011) BMC Med Genet , vol.12 , pp. 172
    • Jimenez, N.L.1    Flannick, J.2    Yahyavi, M.3


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