메뉴 건너뛰기




Volumn 14, Issue 4, 2014, Pages 778-788

PCR-based isolation of multigene families: Lessons from the avian MHC class IIB

Author keywords

Birds; Major histocompatibility complex; Multigene families; PCR bias

Indexed keywords

AVES;

EID: 84902304355     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12234     Document Type: Article
Times cited : (34)

References (33)
  • 1
    • 36149000117 scopus 로고    scopus 로고
    • Characterization, polymorphism, and evolution of MHC class IIB genes in birds of prey
    • Alcaide M, Edwards SV, Negro JJ (2007) Characterization, polymorphism, and evolution of MHC class IIB genes in birds of prey. Journal of Molecular Evolution, 65, 541-554.
    • (2007) Journal of Molecular Evolution , vol.65 , pp. 541-554
    • Alcaide, M.1    Edwards, S.V.2    Negro, J.J.3
  • 2
    • 84885109490 scopus 로고    scopus 로고
    • Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3
    • Alcaide M, Liu M, Edwards SV (2013) Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3. PeerJ, 1, e86.
    • (2013) PeerJ , vol.1
    • Alcaide, M.1    Liu, M.2    Edwards, S.V.3
  • 4
    • 77949340359 scopus 로고    scopus 로고
    • Methods for MHC genotyping in non-model vertebrates
    • Babik W (2010) Methods for MHC genotyping in non-model vertebrates. Molecular Ecology Resources, 10, 237-251.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 237-251
    • Babik, W.1
  • 5
    • 48149112298 scopus 로고    scopus 로고
    • Isolation and characterization of major histocompatibility complex (MHC) class II B genes in the Barn owl (Aves: Tyto alba)
    • Burri R, Niculita-Hirzel H, Roulin A, Fumagalli L (2008a) Isolation and characterization of major histocompatibility complex (MHC) class II B genes in the Barn owl (Aves: Tyto alba). Immunogenetics, 60, 543-550.
    • (2008) Immunogenetics , vol.60 , pp. 543-550
    • Burri, R.1    Niculita-Hirzel, H.2    Roulin, A.3    Fumagalli, L.4
  • 6
    • 44649104548 scopus 로고    scopus 로고
    • Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution
    • Burri R, Niculita-Hirzel H, Salamin N, Roulin A, Fumagalli L (2008b) Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution. Molecular Biology and Evolution, 25, 1180-1191.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1180-1191
    • Burri, R.1    Niculita-Hirzel, H.2    Salamin, N.3    Roulin, A.4    Fumagalli, L.5
  • 8
    • 77957033334 scopus 로고    scopus 로고
    • Towards the simplification of MHC typing protocols: targeting classical MHC class II genes in a passerine, the pied flycatcher Ficedula hypoleuca
    • Canal D, Alcaide M, Anmarkrud J, Potti J (2010) Towards the simplification of MHC typing protocols: targeting classical MHC class II genes in a passerine, the pied flycatcher Ficedula hypoleuca. BMC Research Notes, 3, 236.
    • (2010) BMC Research Notes , vol.3 , pp. 236
    • Canal, D.1    Alcaide, M.2    Anmarkrud, J.3    Potti, J.4
  • 9
    • 0029583058 scopus 로고
    • Dynamics of Mhc evolution in birds and crocodilians: amplification of class II genes with degenerate primers
    • Edwards SV, Grahn M, Potts WK (1995) Dynamics of Mhc evolution in birds and crocodilians: amplification of class II genes with degenerate primers. Molecular Ecology, 4, 719-729.
    • (1995) Molecular Ecology , vol.4 , pp. 719-729
    • Edwards, S.V.1    Grahn, M.2    Potts, W.K.3
  • 10
    • 0033851037 scopus 로고    scopus 로고
    • A 39-kb sequence around a blackbird Mhc class II gene: ghost of selection past and songbird genome architecture
    • Edwards SV, Gasper J, Garrigan D, Martindale D, Koop BF (2000) A 39-kb sequence around a blackbird Mhc class II gene: ghost of selection past and songbird genome architecture. Molecular Biology and Evolution, 17, 1384-1395.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 1384-1395
    • Edwards, S.V.1    Gasper, J.2    Garrigan, D.3    Martindale, D.4    Koop, B.F.5
  • 11
    • 0037272125 scopus 로고    scopus 로고
    • Patterns of polymorphism in the MHC class II of a non-passerine bird, the great snipe (Gallinago media)
    • Ekblom R, Grahn M, Hoglund J (2003) Patterns of polymorphism in the MHC class II of a non-passerine bird, the great snipe (Gallinago media). Immunogenetics, 54, 734-741.
    • (2003) Immunogenetics , vol.54 , pp. 734-741
    • Ekblom, R.1    Grahn, M.2    Hoglund, J.3
  • 12
    • 46449135061 scopus 로고    scopus 로고
    • A phylogenomic study of birds reveals their evolutionary history
    • Hackett SJ, Kimball RT, Reddy S et al. (2008) A phylogenomic study of birds reveals their evolutionary history. Science, 320, 1763-1768.
    • (2008) Science , vol.320 , pp. 1763-1768
    • Hackett, S.J.1    Kimball, R.T.2    Reddy, S.3
  • 13
    • 0036241218 scopus 로고    scopus 로고
    • The evolution of the major histocompatibility complex in birds
    • Hess CM, Edwards SV (2002) The evolution of the major histocompatibility complex in birds. BioScience, 52, 423-431.
    • (2002) BioScience , vol.52 , pp. 423-431
    • Hess, C.M.1    Edwards, S.V.2
  • 14
    • 43049126454 scopus 로고    scopus 로고
    • Support for the minimal essential MHC hypothesis: a parrot with a single, highly polymorphic MHC class II B gene
    • Hughes CR, Miles S, Walbroehl JM (2008) Support for the minimal essential MHC hypothesis: a parrot with a single, highly polymorphic MHC class II B gene. Immunogenetics, 60, 219-231.
    • (2008) Immunogenetics , vol.60 , pp. 219-231
    • Hughes, C.R.1    Miles, S.2    Walbroehl, J.M.3
  • 15
    • 0344629203 scopus 로고    scopus 로고
    • Bias and artifacts in multitemplate polymerase chain reactions (PCR)
    • Kanagawa T (2003) Bias and artifacts in multitemplate polymerase chain reactions (PCR). Journal of Bioscience and Bioengineering, 96, 317-323.
    • (2003) Journal of Bioscience and Bioengineering , vol.96 , pp. 317-323
    • Kanagawa, T.1
  • 16
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: improvements in performance and usability
    • Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30, 772-780.
    • (2013) Molecular Biology and Evolution , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 18
    • 55149119144 scopus 로고    scopus 로고
    • Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci - Implications for evolutionary analysis
    • Lenz TL, Becker S (2008) Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci - Implications for evolutionary analysis. Gene, 427, 117-123.
    • (2008) Gene , vol.427 , pp. 117-123
    • Lenz, T.L.1    Becker, S.2
  • 19
    • 79953831303 scopus 로고    scopus 로고
    • Characterisation of class II B MHC genes from a ratite bird, the little spotted kiwi (Apteryx owenii)
    • Miller H, Bowker-Wright G, Kharkrang M, Ramstad K (2011) Characterisation of class II B MHC genes from a ratite bird, the little spotted kiwi (Apteryx owenii). Immunogenetics, 63, 223-233.
    • (2011) Immunogenetics , vol.63 , pp. 223-233
    • Miller, H.1    Bowker-Wright, G.2    Kharkrang, M.3    Ramstad, K.4
  • 20
    • 0002973323 scopus 로고
    • Balanced polymorphism and evolution by the birth-and-death process in the MHC loci
    • 11th Histocompatibility Workshop and Conference (eds Tsuji K, Aizawa M & Sasazuki T) Oxford University Press, Oxford.
    • Nei M, Hughes AL (1992) Balanced polymorphism and evolution by the birth-and-death process in the MHC loci. In: 11th Histocompatibility Workshop and Conference (eds Tsuji K, Aizawa M & Sasazuki T), pp. 27-38. Oxford University Press, Oxford.
    • (1992) , pp. 27-38
    • Nei, M.1    Hughes, A.L.2
  • 21
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M, Rooney AP (2005) Concerted and birth-and-death evolution of multigene families. Annual Review of Genetics, 39, 121-152.
    • (2005) Annual Review of Genetics , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 22
    • 33644998297 scopus 로고    scopus 로고
    • The evolutionary ecology of the major histocompatibility complex
    • Piertney SB, Oliver MK (2006) The evolutionary ecology of the major histocompatibility complex. Heredity, 96, 7-21.
    • (2006) Heredity , vol.96 , pp. 7-21
    • Piertney, S.B.1    Oliver, M.K.2
  • 23
    • 84856736609 scopus 로고    scopus 로고
    • Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing
    • Promerová M, Babik W, Bryja J, Albrecht T, Stuglik M, Radwan J (2012) Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing. Molecular Ecology Resources, 12, 285-292.
    • (2012) Molecular Ecology Resources , vol.12 , pp. 285-292
    • Promerová, M.1    Babik, W.2    Bryja, J.3    Albrecht, T.4    Stuglik, M.5    Radwan, J.6
  • 24
    • 84880761025 scopus 로고    scopus 로고
    • MHC class IIB exon 2 polymorphism in the grey partridge (Perdix perdix) is shaped by selection, recombination and gene conversion
    • Promerová M, Králová T, Bryjová A, Albrecht T, Bryja J (2013) MHC class IIB exon 2 polymorphism in the grey partridge (Perdix perdix) is shaped by selection, recombination and gene conversion. PLoS One, 8, e69135.
    • (2013) PLoS One , vol.8
    • Promerová, M.1    Králová, T.2    Bryjová, A.3    Albrecht, T.4    Bryja, J.5
  • 26
    • 27744606052 scopus 로고    scopus 로고
    • The importance of immune gene variability (MHC) in evolutionary ecology and conservation
    • Sommer S (2005) The importance of immune gene variability (MHC) in evolutionary ecology and conservation. Frontiers in Zoology, 2, 1-18.
    • (2005) Frontiers in Zoology , vol.2 , pp. 1-18
    • Sommer, S.1
  • 27
    • 84876675587 scopus 로고    scopus 로고
    • Evolutionary history of black grouse major histocompatibility complex class IIB genes revealed through single locus sequence-based genotyping
    • Strand T, Wang B, Meyer-Lucht Y, Hoglund J (2013) Evolutionary history of black grouse major histocompatibility complex class IIB genes revealed through single locus sequence-based genotyping. BMC Genetics, 14, 29.
    • (2013) BMC Genetics , vol.14 , pp. 29
    • Strand, T.1    Wang, B.2    Meyer-Lucht, Y.3    Hoglund, J.4
  • 28
    • 80155164025 scopus 로고    scopus 로고
    • Characterization of MHC class I and II genes in a subantarctic seabird, the blue petrel, Halobaena caerulea (Procellariiformes)
    • Strandh M, Lannefors M, Bonadonna F, Westerdahl H (2011) Characterization of MHC class I and II genes in a subantarctic seabird, the blue petrel, Halobaena caerulea (Procellariiformes). Immunogenetics, 63, 653-666.
    • (2011) Immunogenetics , vol.63 , pp. 653-666
    • Strandh, M.1    Lannefors, M.2    Bonadonna, F.3    Westerdahl, H.4
  • 29
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 30
    • 12044254346 scopus 로고
    • Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift
    • Wagner A, Blackstone N, Cartwright P et al. (1994) Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift. Systematic Biology, 43, 250-261.
    • (1994) Systematic Biology , vol.43 , pp. 250-261
    • Wagner, A.1    Blackstone, N.2    Cartwright, P.3
  • 32
    • 43049145493 scopus 로고    scopus 로고
    • Single locus typing of MHC class I and class II B loci in a population of red jungle fowl
    • Worley K, Gillingham M, Jensen P et al. (2008) Single locus typing of MHC class I and class II B loci in a population of red jungle fowl. Immunogenetics, 60, 233-247.
    • (2008) Immunogenetics , vol.60 , pp. 233-247
    • Worley, K.1    Gillingham, M.2    Jensen, P.3
  • 33


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.