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Volumn 15, Issue 1, 2014, Pages

CIRCUS: A package for Circos display of structural genome variations from paired-end and mate-pair sequencing data

Author keywords

Circos; Genomic data visualization; Genomic structural variants

Indexed keywords

BIOINFORMATICS; COMPUTER SOFTWARE; DATA VISUALIZATION; VISUALIZATION;

EID: 84902301763     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-198     Document Type: Article
Times cited : (38)

References (8)
  • 2
    • 84865564453 scopus 로고    scopus 로고
    • Ggbio: an R package for extending the grammar of graphics for genomic data
    • 10.1186/gb-2012-13-8-r77, 4053745, 22937822
    • Yin T, Cook D, Lawrence M. ggbio: an R package for extending the grammar of graphics for genomic data. Genome Biol 2012, 13:R77. 10.1186/gb-2012-13-8-r77, 4053745, 22937822.
    • (2012) Genome Biol , vol.13
    • Yin, T.1    Cook, D.2    Lawrence, M.3
  • 3
    • 1542714627 scopus 로고    scopus 로고
    • ChromoWheel: a new spin on eukaryotic chromosome visualization
    • doi: 10.1093/bioinformatics/btg448, 10.1093/bioinformatics/btg448, 14990454
    • Sven Ekdahl, Erick L, Sonnhammer L. ChromoWheel: a new spin on eukaryotic chromosome visualization. Bioinformatics 2004, 20(4):576-577. doi: 10.1093/bioinformatics/btg448, 10.1093/bioinformatics/btg448, 14990454.
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 576-577
    • Sven Ekdahl1    Erick, L.2    Sonnhammer, L.3
  • 4
    • 77955044283 scopus 로고    scopus 로고
    • SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
    • 10.1093/bioinformatics/btq293, 2905550, 20639544
    • Zeitouni B, Boeva V, Janoueix-Lerosey I, Loeillet S, Legoix-ne P, Nicolas A, Delattre O, Barillot E. SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data. Bioinformatics 2010, 26:1895-1896. 10.1093/bioinformatics/btq293, 2905550, 20639544.
    • (2010) Bioinformatics , vol.26 , pp. 1895-1896
    • Zeitouni, B.1    Boeva, V.2    Janoueix-Lerosey, I.3    Loeillet, S.4    Legoix-ne, P.5    Nicolas, A.6    Delattre, O.7    Barillot, E.8
  • 5
    • 84881167398 scopus 로고    scopus 로고
    • RCircos: an R package for Circos 2D track plots
    • 10.1186/1471-2105-14-244, 3765848, 23937229
    • Zhang H, Meltzer P, Davis S. RCircos: an R package for Circos 2D track plots. BMC Bioinformatics 2013, 14:244. 10.1186/1471-2105-14-244, 3765848, 23937229.
    • (2013) BMC Bioinformatics , vol.14 , pp. 244
    • Zhang, H.1    Meltzer, P.2    Davis, S.3
  • 6
    • 84863304598 scopus 로고    scopus 로고
    • Vienna, Austria: R Foundation for Statistical Computing, R Core Team
    • R Core Team R: A Language and Environment for Statistical Computing 2014, Vienna, Austria: R Foundation for Statistical Computing, http://www.R-project.org, R Core Team.
    • (2014) R: A Language and Environment for Statistical Computing
  • 7
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • 10.1093/bioinformatics/btp394, 2781750, 19561018
    • Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 2009, 25(21):2865-2871. 10.1093/bioinformatics/btp394, 2781750, 19561018.
    • (2009) Bioinformatics , vol.25 , Issue.21 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3    Apweiler, R.4    Ning, Z.5
  • 8
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107, 2336801, 18349386
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829. 10.1101/gr.074492.107, 2336801, 18349386.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.