-
1
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
10.1038/hdy.2010.152, 3186121, 21139633
-
Ekblom R, Galindo J. Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity 2011, 107(1):1-15. 10.1038/hdy.2010.152, 3186121, 21139633.
-
(2011)
Heredity
, vol.107
, Issue.1
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
2
-
-
72849144434
-
Sequencing technologies - the next generation
-
10.1038/nrg2626, 19997069
-
Metzker ML. Sequencing technologies - the next generation. Nat Rev Genet 2010, 11(1):31-46. 10.1038/nrg2626, 19997069.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
3
-
-
50649089207
-
RNA-Seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
10.1101/gr.079558.108, 2527709, 18550803
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. RNA-Seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008, 18(9):1509-1517. 10.1101/gr.079558.108, 2527709, 18550803.
-
(2008)
Genome Res
, vol.18
, Issue.9
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
4
-
-
84877801923
-
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly
-
10.1186/1471-2164-14-167, 3655071, 23496952
-
Francis WR, Christianson LM, Kiko R, Powers ML, Shaner NC, D Haddock SH. A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. BMC Genomics 2013, 14(1):167. 10.1186/1471-2164-14-167, 3655071, 23496952.
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 167
-
-
Francis, W.R.1
Christianson, L.M.2
Kiko, R.3
Powers, M.L.4
Shaner, N.C.5
Haddock, S.H.D.6
-
5
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
10.1038/nbt.1883, 3571712, 21572440
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 2011, 29(7):644-652. 10.1038/nbt.1883, 3571712, 21572440.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.7
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
Adiconis, X.7
Fan, L.8
Raychowdhury, R.9
Zeng, Q.10
Chen, Z.11
Mauceli, E.12
Hacohen, N.13
Gnirke, A.14
Rhind, N.15
di Palma, F.16
Birren, B.W.17
Nusbaum, C.18
Lindblad-Toh, K.19
Friedman, N.20
Regev, A.21
more..
-
6
-
-
84883246010
-
The root transcriptome for North American ginseng assembled and profiled across seasonal development
-
10.1186/1471-2164-14-564, 3751939, 23957709
-
Wu D, Austin RS, Zhou S, Brown D. The root transcriptome for North American ginseng assembled and profiled across seasonal development. BMC Genomics 2013, 14(1):564. 10.1186/1471-2164-14-564, 3751939, 23957709.
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 564
-
-
Wu, D.1
Austin, R.S.2
Zhou, S.3
Brown, D.4
-
7
-
-
84863726848
-
Transcriptome analysis of the citrus red mite, Panonychus citri, and its gene expression by exposure to insecticide/acaricide
-
10.1111/j.1365-2583.2012.01148.x, 22676046
-
Niu J, Dou W, Ding T, Shen G, Zhang K, Smagghe G, Wang J. Transcriptome analysis of the citrus red mite, Panonychus citri, and its gene expression by exposure to insecticide/acaricide. Insect Mol Biol 2012, 21(4):422-436. 10.1111/j.1365-2583.2012.01148.x, 22676046.
-
(2012)
Insect Mol Biol
, vol.21
, Issue.4
, pp. 422-436
-
-
Niu, J.1
Dou, W.2
Ding, T.3
Shen, G.4
Zhang, K.5
Smagghe, G.6
Wang, J.7
-
8
-
-
84860491097
-
Digital gene expression analysis based on integrated de novo transcriptome assembly of sweet potato [Ipomoea batatas (L.) Lam]
-
10.1371/journal.pone.0036234, 3338685, 22558397
-
Tao X, Gu Y, Wang H, Zheng W, Li X, Zhao C, Zhang Y. Digital gene expression analysis based on integrated de novo transcriptome assembly of sweet potato [Ipomoea batatas (L.) Lam]. PLoS One 2012, 7(4):e36234. 10.1371/journal.pone.0036234, 3338685, 22558397.
-
(2012)
PLoS One
, vol.7
, Issue.4
-
-
Tao, X.1
Gu, Y.2
Wang, H.3
Zheng, W.4
Li, X.5
Zhao, C.6
Zhang, Y.7
-
9
-
-
84881662079
-
Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals
-
10.1186/1471-2164-14-546, 3751062, 23937070
-
Pooyaei Mehr SF, DeSalle R, Kao H, Narechania A, Han Z, Tchernov D, Pieribone V, Gruber DF. Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals. BMC Genomics 2013, 14(1):546. 10.1186/1471-2164-14-546, 3751062, 23937070.
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 546
-
-
Pooyaei Mehr, S.F.1
DeSalle, R.2
Kao, H.3
Narechania, A.4
Han, Z.5
Tchernov, D.6
Pieribone, V.7
Gruber, D.F.8
-
10
-
-
84880060179
-
Transcriptome characterisation of the ant Formica exsecta with new insights into the evolution of desaturase genes in social hymenoptera
-
10.1371/journal.pone.0068200, 3709892, 23874539
-
Badouin H, Belkhir K, Gregson E, Galindo J, Sundström L, Martin SJ, Butlin RK, Smadja CM. Transcriptome characterisation of the ant Formica exsecta with new insights into the evolution of desaturase genes in social hymenoptera. PLoS One 2013, 8(7):e68200. 10.1371/journal.pone.0068200, 3709892, 23874539.
-
(2013)
PLoS One
, vol.8
, Issue.7
-
-
Badouin, H.1
Belkhir, K.2
Gregson, E.3
Galindo, J.4
Sundström, L.5
Martin, S.J.6
Butlin, R.K.7
Smadja, C.M.8
-
11
-
-
84872766313
-
De novo transcriptome assembly in chili pepper (Capsicum frutescens) to identify genes involved in the biosynthesis of capsaicinoids
-
10.1371/journal.pone.0048156, 3551913, 23349661
-
Liu S, Li W, Wu Y, Chen C, Lei J. De novo transcriptome assembly in chili pepper (Capsicum frutescens) to identify genes involved in the biosynthesis of capsaicinoids. PLoS One 2013, 8(1):e48156. 10.1371/journal.pone.0048156, 3551913, 23349661.
-
(2013)
PLoS One
, vol.8
, Issue.1
-
-
Liu, S.1
Li, W.2
Wu, Y.3
Chen, C.4
Lei, J.5
-
12
-
-
0003483227
-
The world spider catalog, version 14.0
-
Platnick NI. The world spider catalog, version 14.0. [http://research.amnh.org/entomology/spiders/catalog/index.html].
-
-
-
Platnick, N.I.1
-
13
-
-
57849118282
-
First divergence time estimate of spiders, scorpions, mites and ticks (Subphylum: Chelicerata) inferred from mitochondrial phylogeny
-
10.1007/s10493-008-9203-5, 18931924
-
Jeyaprakash A, Hoy MA. First divergence time estimate of spiders, scorpions, mites and ticks (Subphylum: Chelicerata) inferred from mitochondrial phylogeny. Exp Appl Acarol 2009, 47(1):1-18. 10.1007/s10493-008-9203-5, 18931924.
-
(2009)
Exp Appl Acarol
, vol.47
, Issue.1
, pp. 1-18
-
-
Jeyaprakash, A.1
Hoy, M.A.2
-
14
-
-
84888150068
-
The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods
-
3826648, 24129506
-
Cao Z, Yu Y, Wu Y, Hao P, Di Z, He Y, Chen Z, Yang W, Shen Z, He X, Sheng J, Xu X, Pan B, Feng J, Yang X, Hong W, Zhao W, Li Z, Huang K, Li T, Kong Y, Liu H, Jiang D, Zhang B, Hu J, Hu Y, Wang B, Dai J, Yuan B, Feng Y, et al. The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods. Nat Commun 2013, 4:2602. 3826648, 24129506.
-
(2013)
Nat Commun
, vol.4
, pp. 2602
-
-
Cao, Z.1
Yu, Y.2
Wu, Y.3
Hao, P.4
Di, Z.5
He, Y.6
Chen, Z.7
Yang, W.8
Shen, Z.9
He, X.10
Sheng, J.11
Xu, X.12
Pan, B.13
Feng, J.14
Yang, X.15
Hong, W.16
Zhao, W.17
Li, Z.18
Huang, K.19
Li, T.20
Kong, Y.21
Liu, H.22
Jiang, D.23
Zhang, B.24
Hu, J.25
Hu, Y.26
Wang, B.27
Dai, J.28
Yuan, B.29
Feng, Y.30
more..
-
15
-
-
81855212676
-
The genome of Tetranychus urticae reveals herbivorous pest adaptations
-
10.1038/nature10640, 22113690
-
Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouzé P, Grbic V, Osborne EJ, Dermauw W, Thi Ngoc PC, Ortego F, Hernández-Crespo P, Diaz I, Martinez M, Navajas M, Sucena T, Magalhães S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA, Ewer J, Villalobos RM, Hutter JL, Hudson SD, Velez M, Yi SV, Zeng J, et al. The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature 2011, 479(7374):487-492. 10.1038/nature10640, 22113690.
-
(2011)
Nature
, vol.479
, Issue.7374
, pp. 487-492
-
-
Grbic, M.1
Van Leeuwen, T.2
Clark, R.M.3
Rombauts, S.4
Rouzé, P.5
Grbic, V.6
Osborne, E.J.7
Dermauw, W.8
Thi Ngoc, P.C.9
Ortego, F.10
Hernández-Crespo, P.11
Diaz, I.12
Martinez, M.13
Navajas, M.14
Sucena, T.15
Magalhães, S.16
Nagy, L.17
Pace, R.M.18
Djuranovic, S.19
Smagghe, G.20
Iga, M.21
Christiaens, O.22
Veenstra, J.A.23
Ewer, J.24
Villalobos, R.M.25
Hutter, J.L.26
Hudson, S.D.27
Velez, M.28
Yi, S.V.29
Zeng, J.30
more..
-
16
-
-
34548025310
-
Tick genomics: the Ixodes genome project and beyond
-
10.1016/j.ijpara.2007.05.011, 17624352
-
Pagel VZ, Geraci NS, Guerrero FD, Wikel SK, Stuart JJ, Nene VM, Hill CA. Tick genomics: the Ixodes genome project and beyond. Int J Parasitol 2007, 37(12):1297-1305. 10.1016/j.ijpara.2007.05.011, 17624352.
-
(2007)
Int J Parasitol
, vol.37
, Issue.12
, pp. 1297-1305
-
-
Pagel, V.Z.1
Geraci, N.S.2
Guerrero, F.D.3
Wikel, S.K.4
Stuart, J.J.5
Nene, V.M.6
Hill, C.A.7
-
17
-
-
79959634465
-
Spinning gland transcriptomics from two main clades of spiders (Order: Araneae)-insights on their molecular, anatomical and behavioral evolution
-
10.1371/journal.pone.0021634, 3126850, 21738742
-
Prosdocimi F, Bittencourt D, da Silva FR, Kirst M, Motta PC, Rech EL. Spinning gland transcriptomics from two main clades of spiders (Order: Araneae)-insights on their molecular, anatomical and behavioral evolution. PLoS One 2011, 6(6):e21634. 10.1371/journal.pone.0021634, 3126850, 21738742.
-
(2011)
PLoS One
, vol.6
, Issue.6
-
-
Prosdocimi, F.1
Bittencourt, D.2
da Silva, F.R.3
Kirst, M.4
Motta, P.C.5
Rech, E.L.6
-
18
-
-
84896713613
-
The venom gland transcriptome of Latrodectus tredecimguttatus revealed by deep sequencing and cDNA library analysis
-
10.1371/journal.pone.0081357, 3842942, 24312294
-
He Q, Duan Z, Yu Y, Liu Z, Liu Z, Liang S. The venom gland transcriptome of Latrodectus tredecimguttatus revealed by deep sequencing and cDNA library analysis. PLoS One 2013, 8(11):e81357. 10.1371/journal.pone.0081357, 3842942, 24312294.
-
(2013)
PLoS One
, vol.8
, Issue.11
-
-
He, Q.1
Duan, Z.2
Yu, Y.3
Liu, Z.4
Liu, Z.5
Liang, S.6
-
19
-
-
84889073986
-
De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special reference to pigment genes
-
10.1186/1471-2164-14-862, 3878950, 24314324
-
Croucher PJ, Brewer MS, Winchell CJ, Oxford GS, Gillespie RG. De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special reference to pigment genes. BMC Genomics 2013, 14(1):862. 10.1186/1471-2164-14-862, 3878950, 24314324.
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 862
-
-
Croucher, P.J.1
Brewer, M.S.2
Winchell, C.J.3
Oxford, G.S.4
Gillespie, R.G.5
-
20
-
-
84856987115
-
Orthologous genes identified by transcriptome sequencing in the spider genus Stegodyphus
-
10.1186/1471-2164-13-70, 3350440, 22333217
-
Mattila TM, Bechsgaard JS, Hansen TT, Schierup MH, Bilde T. Orthologous genes identified by transcriptome sequencing in the spider genus Stegodyphus. BMC Genomics 2012, 13(1):70-70. 10.1186/1471-2164-13-70, 3350440, 22333217.
-
(2012)
BMC Genomics
, vol.13
, Issue.1
, pp. 70-70
-
-
Mattila, T.M.1
Bechsgaard, J.S.2
Hansen, T.T.3
Schierup, M.H.4
Bilde, T.5
-
22
-
-
13744260273
-
Gumfooted lines in black widow cobwebs and the mechanical properties of spider capture silk
-
10.1016/j.zool.2004.11.001, 16351953
-
Blackledge TA, Summers AP, Hayashi CY. Gumfooted lines in black widow cobwebs and the mechanical properties of spider capture silk. Zoology (Jena) 2005, 108(1):41-46. 10.1016/j.zool.2004.11.001, 16351953.
-
(2005)
Zoology (Jena)
, vol.108
, Issue.1
, pp. 41-46
-
-
Blackledge, T.A.1
Summers, A.P.2
Hayashi, C.Y.3
-
23
-
-
28544447534
-
Variation in the material properties of spider dragline silk across species
-
Swanson BO, Blackledge TA, Beltrán J, Hayashi CY. Variation in the material properties of spider dragline silk across species. Appl Phys A Mater Sci Process 2005, 82(2):213-218.
-
(2005)
Appl Phys A Mater Sci Process
, vol.82
, Issue.2
, pp. 213-218
-
-
Swanson, B.O.1
Blackledge, T.A.2
Beltrán, J.3
Hayashi, C.Y.4
-
24
-
-
38349088918
-
Composition and hierarchical organisation of a spider silk
-
10.1371/journal.pone.0000998, 1994588, 17912375
-
Sponner A, Vater W, Monajembashi S, Unger E, Grosse F, Weisshart K. Composition and hierarchical organisation of a spider silk. PLoS One 2007, 2(10):e998. 10.1371/journal.pone.0000998, 1994588, 17912375.
-
(2007)
PLoS One
, vol.2
, Issue.10
-
-
Sponner, A.1
Vater, W.2
Monajembashi, S.3
Unger, E.4
Grosse, F.5
Weisshart, K.6
-
25
-
-
18144391943
-
Spider silk proteins- mechanical property and gene sequence
-
10.2108/zsj.22.273, 15795489
-
Rising A, Nimmervoll H, Grip S, Fernandez-Arias A, Storckenfeldt E, Knight DP, Vollrath F, Engström W. Spider silk proteins- mechanical property and gene sequence. Zoolog Sci 2005, 22(3):273-281. 10.2108/zsj.22.273, 15795489.
-
(2005)
Zoolog Sci
, vol.22
, Issue.3
, pp. 273-281
-
-
Rising, A.1
Nimmervoll, H.2
Grip, S.3
Fernandez-Arias, A.4
Storckenfeldt, E.5
Knight, D.P.6
Vollrath, F.7
Engström, W.8
-
26
-
-
84856943369
-
Conserved C-terminal domain of spider tubuliform spidroin 1 contributes to extensibility in synthetic fibers
-
10.1021/bm201262n, 22176138
-
Gnesa E, Hsia Y, Yarger JL, Weber W, Lin-Cereghino J, Lin-Cereghino G, Tang S, Agari K, Vierra C. Conserved C-terminal domain of spider tubuliform spidroin 1 contributes to extensibility in synthetic fibers. Biomacromolecules 2012, 13(2):304-312. 10.1021/bm201262n, 22176138.
-
(2012)
Biomacromolecules
, vol.13
, Issue.2
, pp. 304-312
-
-
Gnesa, E.1
Hsia, Y.2
Yarger, J.L.3
Weber, W.4
Lin-Cereghino, J.5
Lin-Cereghino, G.6
Tang, S.7
Agari, K.8
Vierra, C.9
-
27
-
-
77956629695
-
Recombinant spider silk proteins for applications in biomaterials
-
10.1002/mabi.201000071, 20602494
-
Spiess K, Lammel A, Scheibel T. Recombinant spider silk proteins for applications in biomaterials. Macromol Biosci 2010, 10(9):998-1007. 10.1002/mabi.201000071, 20602494.
-
(2010)
Macromol Biosci
, vol.10
, Issue.9
, pp. 998-1007
-
-
Spiess, K.1
Lammel, A.2
Scheibel, T.3
-
28
-
-
0029925013
-
Silk properties determined by gland-specific expression of a spider fibroin gene family
-
10.1126/science.272.5258.112, 8600519
-
Guerette PA, Ginzinger DG, Weber BHF, Gosline JM. Silk properties determined by gland-specific expression of a spider fibroin gene family. Science 1996, 272(5258):112-115. 10.1126/science.272.5258.112, 8600519.
-
(1996)
Science
, vol.272
, Issue.5258
, pp. 112-115
-
-
Guerette, P.A.1
Ginzinger, D.G.2
Weber, B.H.F.3
Gosline, J.M.4
-
29
-
-
0035970888
-
Extreme diversity, conservation, and convergence of spider silk fibroin sequences
-
10.1126/science.1057561, 11283372
-
Gatesy J, Hayashi C, Motriuk D, Woods J, Lewis R. Extreme diversity, conservation, and convergence of spider silk fibroin sequences. Science 2001, 291(5513):2603-2605. 10.1126/science.1057561, 11283372.
-
(2001)
Science
, vol.291
, Issue.5513
, pp. 2603-2605
-
-
Gatesy, J.1
Hayashi, C.2
Motriuk, D.3
Woods, J.4
Lewis, R.5
-
30
-
-
0032963575
-
Hypotheses that correlate the sequence, structure, and mechanical properties of spider silk proteins
-
Hayashi CY, Shipley NH, Lewis RV. Hypotheses that correlate the sequence, structure, and mechanical properties of spider silk proteins. Int J Biol Macromol 1999, 24(2-3):271-275.
-
(1999)
Int J Biol Macromol
, vol.24
, Issue.2-3
, pp. 271-275
-
-
Hayashi, C.Y.1
Shipley, N.H.2
Lewis, R.V.3
-
31
-
-
15444368211
-
Characterization of the protein components of Nephila clavipes dragline silk
-
10.1021/bi047671k, 15779899
-
Sponner A, Schlott B, Vollrath F, Unger E, Grosse F, Weisshart K. Characterization of the protein components of Nephila clavipes dragline silk. Biochemistry 2005, 44(12):4727-4736. 10.1021/bi047671k, 15779899.
-
(2005)
Biochemistry
, vol.44
, Issue.12
, pp. 4727-4736
-
-
Sponner, A.1
Schlott, B.2
Vollrath, F.3
Unger, E.4
Grosse, F.5
Weisshart, K.6
-
32
-
-
36849026592
-
Aciniform spidroin, a constituent of egg case sacs and wrapping silk fibers from the black widow spider Latrodectus hesperus
-
10.1074/jbc.M705791200, 17921147
-
Vasanthavada K, Hu X, Falick AM, La Mattina C, Moore AMF, Jones PR, Yee R, Reza R, Tuton T, Vierra C. Aciniform spidroin, a constituent of egg case sacs and wrapping silk fibers from the black widow spider Latrodectus hesperus. J Biol Chem 2007, 282(48):35088-35097. 10.1074/jbc.M705791200, 17921147.
-
(2007)
J Biol Chem
, vol.282
, Issue.48
, pp. 35088-35097
-
-
Vasanthavada, K.1
Hu, X.2
Falick, A.M.3
La Mattina, C.4
Moore, A.M.F.5
Jones, P.R.6
Yee, R.7
Reza, R.8
Tuton, T.9
Vierra, C.10
-
33
-
-
84873588081
-
Ancient properties of spider silks revealed by the complete gene sequence of the prey-wrapping silk protein (AcSp1)
-
10.1093/molbev/mss254, 3563967, 23155003
-
Ayoub NA, Garb JE, Kuelbs A, Hayashi CY. Ancient properties of spider silks revealed by the complete gene sequence of the prey-wrapping silk protein (AcSp1). Mol Biol Evol 2013, 30(3):589-601. 10.1093/molbev/mss254, 3563967, 23155003.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.3
, pp. 589-601
-
-
Ayoub, N.A.1
Garb, J.E.2
Kuelbs, A.3
Hayashi, C.Y.4
-
34
-
-
36649007963
-
Blueprint for a high-performance biomaterial: full-length spider dragline silk genes
-
10.1371/journal.pone.0000514, 1885213, 17565367
-
Ayoub NA, Garb JE, Tinghitella RM, Collin MA, Hayashi CY. Blueprint for a high-performance biomaterial: full-length spider dragline silk genes. PLoS One 2007, 2(6):e514. 10.1371/journal.pone.0000514, 1885213, 17565367.
-
(2007)
PLoS One
, vol.2
, Issue.6
-
-
Ayoub, N.A.1
Garb, J.E.2
Tinghitella, R.M.3
Collin, M.A.4
Hayashi, C.Y.5
-
35
-
-
23044432901
-
Araneoid egg case silk: a fibroin with novel ensemble repeat units from the black widow spider, Latrodectus hesperus
-
10.1021/bi050494i, 16042378
-
Hu X, Lawrence B, Kohler K, Falick AM, Moore AMF, McMullen E, Jones PR, Vierra C. Araneoid egg case silk: a fibroin with novel ensemble repeat units from the black widow spider, Latrodectus hesperus. Biochemistry 2005, 44(30):10020-10027. 10.1021/bi050494i, 16042378.
-
(2005)
Biochemistry
, vol.44
, Issue.30
, pp. 10020-10027
-
-
Hu, X.1
Lawrence, B.2
Kohler, K.3
Falick, A.M.4
Moore, A.M.F.5
McMullen, E.6
Jones, P.R.7
Vierra, C.8
-
36
-
-
33645221987
-
Spider egg case core fibers: trimeric complexes assembled from TuSp1, ECP-1, and ECP-2
-
10.1021/bi052105q, 16533031
-
Hu X, Kohler K, Falick AM, Moore AMF, Jones PR, Vierra C. Spider egg case core fibers: trimeric complexes assembled from TuSp1, ECP-1, and ECP-2. Biochemistry 2006, 45(11):3506-3516. 10.1021/bi052105q, 16533031.
-
(2006)
Biochemistry
, vol.45
, Issue.11
, pp. 3506-3516
-
-
Hu, X.1
Kohler, K.2
Falick, A.M.3
Moore, A.M.F.4
Jones, P.R.5
Vierra, C.6
-
37
-
-
77949769815
-
Silk gene transcripts in the developing tubuliform glands of the Western black widow, Latrodectus hesperus
-
Casem ML, Collin MA, Ayoub NA, Hayashi CY. Silk gene transcripts in the developing tubuliform glands of the Western black widow, Latrodectus hesperus. J Arachnol 2010, 38(1):99-103.
-
(2010)
J Arachnol
, vol.38
, Issue.1
, pp. 99-103
-
-
Casem, M.L.1
Collin, M.A.2
Ayoub, N.A.3
Hayashi, C.Y.4
-
38
-
-
20544450200
-
Characterization of a novel class II bHLH transcription factor from the black widow spider, Latrodectus hesperus, with silk-gland restricted patterns of expression
-
10.1089/dna.2005.24.371, 15941389
-
Kohler K, Thayer W, Le T, Sembhi A, Vasanthavada K, Moore AMF, Vierra CA. Characterization of a novel class II bHLH transcription factor from the black widow spider, Latrodectus hesperus, with silk-gland restricted patterns of expression. DNA Cell Biol 2005, 24(6):371-380. 10.1089/dna.2005.24.371, 15941389.
-
(2005)
DNA Cell Biol
, vol.24
, Issue.6
, pp. 371-380
-
-
Kohler, K.1
Thayer, W.2
Le, T.3
Sembhi, A.4
Vasanthavada, K.5
Moore, A.M.F.6
Vierra, C.A.7
-
39
-
-
70350063816
-
Spider web glue: two proteins expressed from opposite strands of the same DNA sequence
-
10.1021/bm900681w, 19731928
-
Choresh O, Bayarmagnai B, Lewis RV. Spider web glue: two proteins expressed from opposite strands of the same DNA sequence. Biomacromolecules 2009, 10(10):2852-2856. 10.1021/bm900681w, 19731928.
-
(2009)
Biomacromolecules
, vol.10
, Issue.10
, pp. 2852-2856
-
-
Choresh, O.1
Bayarmagnai, B.2
Lewis, R.V.3
-
40
-
-
84867824150
-
Spider glue proteins have distinct architectures compared with traditional spidroin family members
-
10.1074/jbc.M112.399816, 3476267, 22927444
-
Vasanthavada K, Hu X, Tuton-Blasingame T, Hsia Y, Sampath S, Pacheco R, Freeark J, Falick AM, Tang S, Fong J, Kohler K, La Mattina-Hawkins C, Vierra C. Spider glue proteins have distinct architectures compared with traditional spidroin family members. J Biol Chem 2012, 287(43):35986-35999. 10.1074/jbc.M112.399816, 3476267, 22927444.
-
(2012)
J Biol Chem
, vol.287
, Issue.43
, pp. 35986-35999
-
-
Vasanthavada, K.1
Hu, X.2
Tuton-Blasingame, T.3
Hsia, Y.4
Sampath, S.5
Pacheco, R.6
Freeark, J.7
Falick, A.M.8
Tang, S.9
Fong, J.10
Kohler, K.11
La Mattina-Hawkins, C.12
Vierra, C.13
-
41
-
-
2542623618
-
Molecular and mechanical properties of major ampullate silk of the black widow spider, Latrodectus hesperus
-
10.1021/bm0342640, 15132648
-
Lawrence BA, Vierra CA, Moore AMF. Molecular and mechanical properties of major ampullate silk of the black widow spider, Latrodectus hesperus. Biomacromolecules 2004, 5(3):689-695. 10.1021/bm0342640, 15132648.
-
(2004)
Biomacromolecules
, vol.5
, Issue.3
, pp. 689-695
-
-
Lawrence, B.A.1
Vierra, C.A.2
Moore, A.M.F.3
-
42
-
-
0042430621
-
Genome sizes of spiders
-
10.1093/jhered/esg070, 12920099
-
Gregory TR. Genome sizes of spiders. J Hered 2003, 94(4):285-290. 10.1093/jhered/esg070, 12920099.
-
(2003)
J Hered
, vol.94
, Issue.4
, pp. 285-290
-
-
Gregory, T.R.1
-
43
-
-
70350418753
-
Pyriform spidroin 1, a novel member of the silk gene family that anchors dragline silk fibers in attachment discs of the black widow spider, Latrodectus hesperus
-
10.1074/jbc.M109.021378, 2781455, 19666476
-
Blasingame E, Tuton-Blasingame T, Larkin L, Falick AM, Zhao L, Fong J, Vaidyanathan V, Visperas A, Geurts P, Hu X, La Mattina C, Vierra C. Pyriform spidroin 1, a novel member of the silk gene family that anchors dragline silk fibers in attachment discs of the black widow spider, Latrodectus hesperus. J Biol Chem 2009, 284(42):29097-29108. 10.1074/jbc.M109.021378, 2781455, 19666476.
-
(2009)
J Biol Chem
, vol.284
, Issue.42
, pp. 29097-29108
-
-
Blasingame, E.1
Tuton-Blasingame, T.2
Larkin, L.3
Falick, A.M.4
Zhao, L.5
Fong, J.6
Vaidyanathan, V.7
Visperas, A.8
Geurts, P.9
Hu, X.10
La Mattina, C.11
Vierra, C.12
-
44
-
-
77955292367
-
Untangling spider silk evolution with spidroin terminal domains
-
10.1186/1471-2148-10-243, 2928236, 20696068
-
Garb JE, Ayoub NA, Hayashi CY. Untangling spider silk evolution with spidroin terminal domains. BMC Evol Biol 2010, 10(1):243-243. 10.1186/1471-2148-10-243, 2928236, 20696068.
-
(2010)
BMC Evol Biol
, vol.10
, Issue.1
, pp. 243-243
-
-
Garb, J.E.1
Ayoub, N.A.2
Hayashi, C.Y.3
-
45
-
-
84872483518
-
Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-Seq experiments
-
10.1111/mec.12014, 22998089
-
Vijay N, Poelstra JW, Künstner A, Wolf JBW. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-Seq experiments. Mol Ecol 2013, 22(3):620-634. 10.1111/mec.12014, 22998089.
-
(2013)
Mol Ecol
, vol.22
, Issue.3
, pp. 620-634
-
-
Vijay, N.1
Poelstra, J.W.2
Künstner, A.3
Wolf, J.B.W.4
-
46
-
-
83855165105
-
Repetitive DNA and next-generation sequencing: computational challenges and solutions
-
Treangen TJ, Salzberg SL. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet 2012, 13(1):36-46.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.1
, pp. 36-46
-
-
Treangen, T.J.1
Salzberg, S.L.2
-
47
-
-
84876566349
-
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
-
10.1093/nar/gks1116, 3531149, 23180791
-
Waterhouse RM, Tegenfeldt F, Li J, Zdobnov EM, Kriventseva EV. OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. Nucleic Acids Res 2013, 41:D358-D365. 10.1093/nar/gks1116, 3531149, 23180791.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Waterhouse, R.M.1
Tegenfeldt, F.2
Li, J.3
Zdobnov, E.M.4
Kriventseva, E.V.5
-
48
-
-
33645047928
-
Wolbachia and other endosymbiont infections in spiders
-
10.1111/j.1365-294X.2005.02802.x, 16448417
-
Goodacre SL, Martin OY, Thomas CFG, Hewitt GM. Wolbachia and other endosymbiont infections in spiders. Mol Ecol 2006, 15(2):517-527. 10.1111/j.1365-294X.2005.02802.x, 16448417.
-
(2006)
Mol Ecol
, vol.15
, Issue.2
, pp. 517-527
-
-
Goodacre, S.L.1
Martin, O.Y.2
Thomas, C.F.G.3
Hewitt, G.M.4
-
49
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
10.1038/nmeth.1701, 21959131
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 2011, 8(10):785-786. 10.1038/nmeth.1701, 21959131.
-
(2011)
Nat Methods
, vol.8
, Issue.10
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
50
-
-
65249141185
-
Reconstructing web evolution and spider diversification in the molecular era
-
10.1073/pnas.0901377106, 2656561, 19289848
-
Blackledge TA, Scharff N, Coddington JA, Szüts T, Wenzel JW, Hayashi CY, Agnarsson I. Reconstructing web evolution and spider diversification in the molecular era. Proc Natl Acad Sci U S A 2009, 106(13):5229-5234. 10.1073/pnas.0901377106, 2656561, 19289848.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.13
, pp. 5229-5234
-
-
Blackledge, T.A.1
Scharff, N.2
Coddington, J.A.3
Szüts, T.4
Wenzel, J.W.5
Hayashi, C.Y.6
Agnarsson, I.7
-
51
-
-
34249848751
-
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
-
10.1093/bioinformatics/btm071, 17332020
-
Parra G, Bradnam K, Korf I. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 2007, 23(9):1061-1067. 10.1093/bioinformatics/btm071, 17332020.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
52
-
-
84902125190
-
Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics
-
Haney RA, Ayoub NA, Clarke T, Hayashi CY, Garb JE. Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics. BMC Genomics 2014, 15:366.
-
(2014)
BMC Genomics
, vol.15
, pp. 366
-
-
Haney, R.A.1
Ayoub, N.A.2
Clarke, T.3
Hayashi, C.Y.4
Garb, J.E.5
-
53
-
-
34047094278
-
Duplicated Hox genes in the spider Cupiennius salei
-
10.1186/1742-9994-4-10, 1838909, 17355624
-
Schwager EE, Schoppmeier M, Pechmann M, Damen WGM. Duplicated Hox genes in the spider Cupiennius salei. Front Zool 2007, 4:10. 10.1186/1742-9994-4-10, 1838909, 17355624.
-
(2007)
Front Zool
, vol.4
, pp. 10
-
-
Schwager, E.E.1
Schoppmeier, M.2
Pechmann, M.3
Damen, W.G.M.4
-
54
-
-
2542585370
-
Spider silk protein refolding is controlled by changing pH
-
10.1021/bm034307c, 15132650
-
Dicko C, Vollrath F, Kenney JM. Spider silk protein refolding is controlled by changing pH. Biomacromolecules 2004, 5(3):704-710. 10.1021/bm034307c, 15132650.
-
(2004)
Biomacromolecules
, vol.5
, Issue.3
, pp. 704-710
-
-
Dicko, C.1
Vollrath, F.2
Kenney, J.M.3
-
55
-
-
84886098561
-
Babraham Bioinformatics FastQC Package
-
Babraham Bioinformatics FastQC Package. [http://www.bioinformatics.babraham.ac.uk/projects/fastqc/].
-
-
-
-
56
-
-
84859768479
-
Oases: robust de novo RNA-Seq assembly across the dynamic range of expression levels
-
10.1093/bioinformatics/bts094, 3324515, 22368243
-
Schulz MH, Zerbino DR, Vingron M, Birney E. Oases: robust de novo RNA-Seq assembly across the dynamic range of expression levels. Bioinformatics 2012, 28(8):1086-1092. 10.1093/bioinformatics/bts094, 3324515, 22368243.
-
(2012)
Bioinformatics
, vol.28
, Issue.8
, pp. 1086-1092
-
-
Schulz, M.H.1
Zerbino, D.R.2
Vingron, M.3
Birney, E.4
-
57
-
-
84902180361
-
EMBOSS GetOrf
-
EMBOSS GetOrf. [http://emboss.sourceforge.net/apps/cvs/emboss/apps/getorf.html].
-
-
-
-
58
-
-
84886755895
-
BLASTCLUST
-
BLASTCLUST. [ftp://ftp.ncbi.nih.gov/blast/documents/blastclust.html].
-
-
-
-
59
-
-
0025183708
-
Basic local alignment search tool
-
10.1016/S0022-2836(05)80360-2, 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410. 10.1016/S0022-2836(05)80360-2, 2231712.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
60
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25(1):25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
61
-
-
33750483615
-
AgBase: a functional genomics resource for agriculture
-
10.1186/1471-2164-7-229, 1618847, 16961921
-
McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC. AgBase: a functional genomics resource for agriculture. BMC Genomics 2006, 7:229-229. 10.1186/1471-2164-7-229, 1618847, 16961921.
-
(2006)
BMC Genomics
, vol.7
, pp. 229-229
-
-
McCarthy, F.M.1
Wang, N.2
Magee, G.B.3
Nanduri, B.4
Lawrence, M.L.5
Camon, E.B.6
Barrell, D.G.7
Hill, D.P.8
Dolan, M.E.9
Williams, W.P.10
Luthe, D.S.11
Bridges, S.M.12
Burgess, S.C.13
-
62
-
-
77953212372
-
Gene ontology analysis for RNA-Seq: accounting for selection bias
-
10.1186/gb-2010-11-2-r14, 2872874, 20132535
-
Young MD, Wakefield MJ, Smyth GK, Oshlack A. Gene ontology analysis for RNA-Seq: accounting for selection bias. Genome Biol 2010, 11(2):R14. 10.1186/gb-2010-11-2-r14, 2872874, 20132535.
-
(2010)
Genome Biol
, vol.11
, Issue.2
-
-
Young, M.D.1
Wakefield, M.J.2
Smyth, G.K.3
Oshlack, A.4
-
63
-
-
79961123152
-
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinform 2011, 12(1):323-323.
-
(2011)
BMC Bioinform
, vol.12
, Issue.1
, pp. 323-323
-
-
Li, B.1
Dewey, C.N.2
-
64
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
65
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
10.1093/sysbio/syq010, 20525638
-
Guindon S, Dufayard J, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59(3):307-321. 10.1093/sysbio/syq010, 20525638.
-
(2010)
Syst Biol
, vol.59
, Issue.3
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
66
-
-
1042304216
-
APE: Analyses of Phylogenetics and Evolution in R language
-
10.1093/bioinformatics/btg412, 14734327
-
Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 2004, 20(2):289-290. 10.1093/bioinformatics/btg412, 14734327.
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
|