Hydrophilic polydopamine-coated magnetic graphene nanocomposites for highly efficient tryptic immobilization

Proteomics

Volumn 14, Issue 12, 2014, Pages 1457-1463

  Shi, Chenyi ^a   Deng, Chunhui ^a   Li, Yan ^a   Zhang, Xiangmin ^a   Yang, Pengyuan ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

Digestion; Immobilization of trypsin; Magnetic polydopamine coated magnetic graphene nanocomposites; MALDI TOF MS; Nanoproteomics

Indexed keywords

DOPAMINE DERIVATIVE; GRAPHENE; MAGNETIC GRAPHENE NANOCOMPOSITE; MICROSPHERE; NANOCOMPOSITE; PROTEOME; TRYPSIN; UNCLASSIFIED DRUG; GRAPHITE; IMMOBILIZED ENZYME; INDOLE DERIVATIVE; MAGNETITE NANOPARTICLE; MILK PROTEIN; POLYDOPAMINE; POLYMER; MAGNETIC NANOPARTICLE; POLYDOPAMINE COATED MAGNETIC GRAPHENE NANOCOMPOSITE;

ARTICLE; ELECTROSPRAY MASS SPECTROMETRY; HYDROPHILICITY; IMMOBILIZATION; INFRARED SPECTROSCOPY; MAGNETIC FIELD; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICHAEL ADDITION; MILK; POLYMERIZATION; PRIORITY JOURNAL; RAMAN SPECTROMETRY; REVERSED PHASE LIQUID CHROMATOGRAPHY; SCANNING ELECTRON MICROSCOPY; SURFACE PROPERTY; TANDEM MASS SPECTROMETRY; TRANSMISSION ELECTRON MICROSCOPY; CHEMICAL PHENOMENA; CHEMISTRY; HUMAN; METABOLISM; PROTEOMICS; DIGESTION; FEASIBILITY STUDY; MATERIAL COATING; MOLECULAR STABILITY; PROTEIN ANALYSIS; SURFACE AREA;

ENZYMES, IMMOBILIZED; GRAPHITE; HUMANS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; INDOLES; MAGNETITE NANOPARTICLES; MILK PROTEINS; NANOCOMPOSITES; POLYMERS; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TANDEM MASS SPECTROMETRY; TRYPSIN;

EID: 84902145997     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201300487     Document Type: Article

References (34)

1. Kahn, P., From genome to proteome: looking at a cell's proteinstitle. Science 1995, 270, 369-370.
2. Domon, B., Aebersold, R., Mass spectrometry and protein analysis. Science 2006, 312, 212-217.
3. Jang, H. B., Sung, H. W., Nho, S. W., Park, S. B. et al., Enhanced reliability of avian influenza virus (AIV) and Newcastle disease virus (NDV) identification using matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS). Anal. Chem. 2011, 83, 1717-1725.
4. Spro, J., Sinz, A., A capillary monolithic trypsin reactor for efficient protein digestion in online and offline coupling to ESI and MALDI mass spectrometry. Anal. Chem. 2010, 82, 1434-1443.
5. Ma, J., Zhang, L., Liang, Z., Shan, Y., Zhang, Y., Immobilized enzyme reactors in proteomics. Trends Anal. Chem. 2011, 30, 691-702.
6. Wang, S., Bao, H., Zhang, L., Yuan, P., Chen, G., Infrared-assisted on plate proteolysis for MALDI-TOF-MS peptide mapping. Anal. Chem. 2008, 80, 5640-5647.
7. Winter, D., Steen, H., Optimization of cell lysis and protein digestion protocols for the nalysis of Hela S3 cells by LC-MS/MS. Proteomics 2011, 11, 4726-4730.
8. 4.carbon nanotube composite for protein digestion. Anal. Chim. Acta. 2008, 612, 182-189.
9. Qiao, L., Liu, Y., Hudson, S. P., Yang, P. Y. et al., A nanoporous reactor for efficient proteolysis. Chem. Eur. J. 2008, 14, 151-157.
10. Bornscheuer, U. T., Immobilizing enzymes: how to create more suitable biocatalysts. Angew. Chem. Int. Ed. 2003, 42, 3336-3337.
11. Ma, J., Liang, Z., Qiao, X., Deng, Q. et al., Organic-inorganic hybrid silica monolith based immobilized trypsin reactor with high enzymatic activity. Anal. Chem. 2008, 80, 2949-2956.
12. Brinkworth, C. S., identification of ricin in crude and purified extracts from castor beans using on-target tryptic digestion and MALDI mass spectrometry. Anal. Chem. 2010, 82, 5246-5252.
13. Xu, F., Wang, W., Tan, Y., Bruening, M. L., Facile trypsin immobilization in polymeric membranes for rapid, efficient protein digestion. Anal. Chem. 2010, 82, 10045-10051.
14. Nagai, N., Suzuki, Y., Sekikawa, C., Nara, T. Y. et al., Fabrication of boehmite films with cage-like pores and their properties as enzyme immobilization supports. Mater. Chem. 2012, 22, 3234-3241.
15. Pierre, S. J., Thies, J. C., Dureault, A., Cameron, N. R. et al., Covalent enzyme immobilization onto photopolymerized highly porous monoliths. Adv. Mater. 2006, 18, 1822-1826.
16. Lin, S., Yao, G., Qi, D., Li, Y. et al., Fast and efficient proteolysis by microwave-assisted protein digestion using trypsin-immobilized magnetic silica microspheres. Anal. Chem. 2008, 80, 3655-5665.
17. Liu, Z., Wang, H. S., Li, B., Liu, C. et al., Biocompatible magnetic cellulose-chitosan hybrid gel microspheres reconstituted from ionic liquids for enzyme immobilization. J. Mater. Chem. 2012, 22, 15085-15091
18. Dulay, M. T., Baca, Q. J., Zare, R. N., Enhanced proteolytic activity of covalently bound enzymes in photopolymerized sol gel. Anal. Chem. 2005, 77, 4604-4610.
19. Pereira-Medrano, A. G., Forester, S., Fowler, G. J. S., McArthur, S. L., Wright, P. C., Rapid fabrication of glass/PDMS hybrid μIMER for high throughput membrane proteomics. Lab Chip 2010, 10, 3397-3406.
20. Gao, J. H., Gu, H. W., Xu, B., Multifunctional magnetic nanoparticles: design, synthesis, and biomedical applications. Accounts Chem. Res. 2009, 42, 1097-1107.
21. Li, Y., Zhang, X. M., Deng, C. H., Functionalized magnetic nanoparticles for sample preparation in proteomics and peptidomics analysis. Chem. Soc. Rev. 2013, 42, 8517-8539.
22. 18O labeling and absolute protein quantification. Anal. Chem. 2012, 84, 3138-3144.
23. Huang, J., Li, X., Zheng, Y., Zhang, Y. et al., Immobilization of penicillin G acylase on poly[(glycidyl methacrylate)-co-(glycerol monomethacrylate)]-grafted magnetic microspheres. Macromol. Biosci. 2008, 8, 508-515.
24. Deng, Y. H., Deng, C. H., Qi, D. W., Liu, C. et al., Synthesis of core/shell colloidal magnetic zeolite microspheres for the immobilizaton of trypsin. Adv. Mater. 2009, 21, 1377-1382.
25. Novoselov, K. S., Geim, A. K., Morozov, S. V., Jiang, D. et al., Electric field effect in atomically thin carbon films. Science, 2004, 306, 666-669.
26. Stoller, M. D., Park, S. J., Zhu, Y. W., An, J. H., Ruoff, R. S., Graphene-based ultracapacitors. Nano Lett. 2008, 8, 3498-3502.
27. Jiang, B., Yang, K. G., Zhao, Q., Wu, Q. et al., Hydrophilic immobilized trypsin reactor with magnetic graphene oxide as support for high efficient proteome digestion. J. Chromatogr. A 2012, 1254, 8-13.
28. Lee, H., Dellatore, S. M., Miller, W. M., Messersmith, P. B., Mussel-inspired surface chemistry for multifunctional coatings. Science, 2007, 318, 426-430.
29. Lee, H., Scherer, N. F., Messersmith, P. B., Single molecule mechanics of mussel adhesion. Proc. Natl. Acad. Sci. USA 2006, 103, 12999-13003.
30. 4@polydopamine core-shell microspheres for highly selective enrichment of phosphopeptides. Chem. Commun. 2013, 49, 5055-5077.
31. Fei, B., Qian, B., Yang, Z., Wang, R. et al., Effect of hole size on the incorporation of C60 molecules inside single-wall carbon nanohorns and their release. Carbon 2008, 46, 1792-1794.
32. Hong, S., Lee, J. S., Ryu, J., Lee, S. H. et al., Bio-inspired strategy for on-surface synthesis of silver nanoparticles for metal/organic hybrid nanomaterials and LDI-MS substrates. Nanotechnology 2011, 22, 494020.
33. Lee, H., Rho, J., Messersmith, P. B., Facile conjugation of biomolecules onto surfaces via mussel adhesive protein inspired coatings. Adv. Mater. 2009, 21, 431-434.
34. Li, Y., Yan, B., Deng, C., Tang, J. et al., On-plate digeston of proteins using novel trypsin-immobilized magnetic nanospheres for MALDI-TOF-MS analysis. Proteomics 2007, 7, 3661-3671.