메뉴 건너뛰기




Volumn 139, Issue 3, 2014, Pages 557-566

Characterization of Pectobacterium carotovorum subsp. carotovorum and brasiliense from diseased potatoes in Kenya

Author keywords

Pectobacterium spp. Kenya; Pectolytic; Soft rot Enterobacteriaceae

Indexed keywords

BACTERIAL DISEASE; BACTERIUM; INFECTIOUS DISEASE; PATHOGENICITY; PHYLOGENETICS; POTATO;

EID: 84901983178     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-014-0411-z     Document Type: Article
Times cited : (37)

References (41)
  • 2
    • 84872303081 scopus 로고    scopus 로고
    • Pectobacterium carotovorum subsp. brasiliense causing soft rot on paprika in Korea
    • Choi, O., & Kim, J. (2013). Pectobacterium carotovorum subsp. brasiliense causing soft rot on paprika in Korea. Journal of Phytopathology, 161, 125-127.
    • (2013) Journal of Phytopathology , vol.161 , pp. 125-127
    • Choi, O.1    Kim, J.2
  • 3
    • 33745901648 scopus 로고    scopus 로고
    • Studies on pectolytic Erwinia spp. in Portugal reveal unusual strains of E. carotovora subsp. atroseptica
    • Costa, A. B., Eloy, M., Cruz, L., Janse, J. D., & Oliveira, H. (2006). Studies on pectolytic Erwinia spp. in Portugal reveal unusual strains of E. carotovora subsp. atroseptica. Journal of Plant Pathology, 88, 161-169.
    • (2006) Journal of Plant Pathology , vol.88 , pp. 161-169
    • Costa, A.B.1    Eloy, M.2    Cruz, L.3    Janse, J.D.4    Oliveira, H.5
  • 4
    • 80155214684 scopus 로고    scopus 로고
    • Control of blackleg and tuber soft rot of potato caused by Pectobacterium and Dickeya species: a review
    • Czajkowski, R., Pérombelon, M. C. M., van Veen, J. A., & van der Wolf, J. M. (2011). Control of blackleg and tuber soft rot of potato caused by Pectobacterium and Dickeya species: a review. Plant Pathology, 60, 999-1013.
    • (2011) Plant Pathology , vol.60 , pp. 999-1013
    • Czajkowski, R.1    Pérombelon, M.C.M.2    van Veen, J.A.3    van der Wolf, J.M.4
  • 5
    • 0028205663 scopus 로고
    • PCR and restriction fragment length polymorphism of a pel gene as a tool to identify Erwinia carotovora in relation to potato diseases
    • Darrasse, A., Priou, S., Kotoujansky, A., & Bertheau, Y. (1994). PCR and restriction fragment length polymorphism of a pel gene as a tool to identify Erwinia carotovora in relation to potato diseases. Applied and Environmental Microbiology, 60, 1437-1443.
    • (1994) Applied and Environmental Microbiology , vol.60 , pp. 1437-1443
    • Darrasse, A.1    Priou, S.2    Kotoujansky, A.3    Bertheau, Y.4
  • 6
    • 0028795873 scopus 로고
    • PCR detection of Erwinia carotovorum subsp. atrosepticum associated with potato tissue
    • De Boer, S. H., & Ward, L. J. (1995). PCR detection of Erwinia carotovorum subsp. atrosepticum associated with potato tissue. Phytopathology, 85, 854-858.
    • (1995) Phytopathology , vol.85 , pp. 854-858
    • De Boer, S.H.1    Ward, L.J.2
  • 8
    • 1542269689 scopus 로고    scopus 로고
    • Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil
    • Duarte, V., Boer, S. H. D., Ward, L. J., & Oliveira, A. M. R. D. (2004). Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil. Journal of Applied Microbiology, 96, 535-545.
    • (2004) Journal of Applied Microbiology , vol.96 , pp. 535-545
    • Duarte, V.1    Boer, S.H.D.2    Ward, L.J.3    Oliveira, A.M.R.D.4
  • 9
    • 0037360648 scopus 로고    scopus 로고
    • Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov
    • Gardan, L., Gouy, C., Christen, R., & Samson, R. (2003). Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov. International Journal of Systematic and Evolutionary Microbiology, 53, 381-391.
    • (2003) International Journal of Systematic and Evolutionary Microbiology , vol.53 , pp. 381-391
    • Gardan, L.1    Gouy, C.2    Christen, R.3    Samson, R.4
  • 10
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
    • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 13
    • 0035721788 scopus 로고    scopus 로고
    • Modified crystal violet pectate medium (CVP) based on a new polypectate source (Slendid) for the detection and isolation of soft rot erwinias
    • Hyman, L. J., Sullivan, L., Toth, I. K., & Perombelon, M. C. M. (2001). Modified crystal violet pectate medium (CVP) based on a new polypectate source (Slendid) for the detection and isolation of soft rot erwinias. Potato Research, 44, 265-270.
    • (2001) Potato Research , vol.44 , pp. 265-270
    • Hyman, L.J.1    Sullivan, L.2    Toth, I.K.3    Perombelon, M.C.M.4
  • 14
    • 0038814791 scopus 로고    scopus 로고
    • PCR-based specific and sensitive detection of Pectobacterium carotovorum ssp. carotovorum by primers generated from a URP-PCR fingerprinting-derived polymorphic band
    • Kang, H. W., Kwon, S. W., & Go, S. J. (2003). PCR-based specific and sensitive detection of Pectobacterium carotovorum ssp. carotovorum by primers generated from a URP-PCR fingerprinting-derived polymorphic band. Plant Pathology, 52, 127-133.
    • (2003) Plant Pathology , vol.52 , pp. 127-133
    • Kang, H.W.1    Kwon, S.W.2    Go, S.J.3
  • 15
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh, K., Kuma, K., Toh, H., & Miyata, T. (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research, 33, 511-518.
    • (2005) Nucleic Acids Research , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 16
    • 67649600424 scopus 로고    scopus 로고
    • Phylogeny and virulence of naturally occurring type III secretion-deficient Pectobacterium strains
    • Kim, H.-S., Ma, B., Perna, N. T., & Charkowski, A. O. (2009). Phylogeny and virulence of naturally occurring type III secretion-deficient Pectobacterium strains. Applied and Environmental Microbiology, 75, 4539-4549.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 4539-4549
    • Kim, H.-S.1    Ma, B.2    Perna, N.T.3    Charkowski, A.O.4
  • 17
    • 84865088767 scopus 로고    scopus 로고
    • Complete genome sequence of phytopathogenic Pectobacterium carotovorum subsp. carotovorum bacteriophage PP1
    • Lee, J.-H., Shin, H., Ji, S., Malhotra, S., Kumar, M., Ryu, S., et al. (2012). Complete genome sequence of phytopathogenic Pectobacterium carotovorum subsp. carotovorum bacteriophage PP1. Journal of Virology, 86, 8899-8901.
    • (2012) Journal of Virology , vol.86 , pp. 8899-8901
    • Lee, J.-H.1    Shin, H.2    Ji, S.3    Malhotra, S.4    Kumar, M.5    Ryu, S.6
  • 18
    • 34548858741 scopus 로고    scopus 로고
    • Host range and molecular phylogenies of the soft rot Enterobacterial genera Pectobacterium and Dickeya
    • Ma, B., Hibbing, M. E., Kim, H.-S., Reedy, R. M., Yedidia, I., Breuer, J., et al. (2007). Host range and molecular phylogenies of the soft rot Enterobacterial genera Pectobacterium and Dickeya. Phytopathology, 97, 1150-1163.
    • (2007) Phytopathology , vol.97 , pp. 1150-1163
    • Ma, B.1    Hibbing, M.E.2    Kim, H.-S.3    Reedy, R.M.4    Yedidia, I.5    Breuer, J.6
  • 21
    • 84871934617 scopus 로고    scopus 로고
    • Characterisation of Pectobacterium wasabiae causing blackleg and soft rot diseases in South Africa
    • Moleleki, L. N., Onkendi, E. M., Mongae, A., & Kubheka, G. C. (2013). Characterisation of Pectobacterium wasabiae causing blackleg and soft rot diseases in South Africa. European Journal of Plant Pathology, 135, 279-288.
    • (2013) European Journal of Plant Pathology , vol.135 , pp. 279-288
    • Moleleki, L.N.1    Onkendi, E.M.2    Mongae, A.3    Kubheka, G.C.4
  • 23
    • 84901986121 scopus 로고    scopus 로고
    • Potato production in Kenya: farming systems and production constraints
    • Muthoni, J., Shimelis, H., & Melis, R. (2013). Potato production in Kenya: farming systems and production constraints. Journal of Agricultural Science, 5, 182-197.
    • (2013) Journal of Agricultural Science , vol.5 , pp. 182-197
    • Muthoni, J.1    Shimelis, H.2    Melis, R.3
  • 24
    • 84866287460 scopus 로고    scopus 로고
    • Taxonomic relatedness between Pectobacterium carotovorum subsp. carotovorum, Pectobacterium carotovorum subsp. odoriferum and Pectobacterium carotovorum subsp. brasiliense subsp. nov
    • Nabhan, S., De Boer, S. H., Maiss, E., & Wydra, K. (2012a). Taxonomic relatedness between Pectobacterium carotovorum subsp. carotovorum, Pectobacterium carotovorum subsp. odoriferum and Pectobacterium carotovorum subsp. brasiliense subsp. nov. Journal of Applied Microbiology, 113, 904-913.
    • (2012) Journal of Applied Microbiology , vol.113 , pp. 904-913
    • Nabhan, S.1    De Boer, S.H.2    Maiss, E.3    Wydra, K.4
  • 25
    • 84860750676 scopus 로고    scopus 로고
    • The use of two complementary DNA assays, AFLP and MLSA, for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum
    • Nabhan, S., Wydra, K., Linde, M., & Debener, T. (2012b). The use of two complementary DNA assays, AFLP and MLSA, for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum. Plant Pathology, 61, 498-508.
    • (2012) Plant Pathology , vol.61 , pp. 498-508
    • Nabhan, S.1    Wydra, K.2    Linde, M.3    Debener, T.4
  • 26
    • 78650800243 scopus 로고    scopus 로고
    • Is a robust phylogeny of the enterobacterial plant pathogens attainable?
    • Naum, M., Brown, E. W., & Mason-Gamer, R. J. (2011). Is a robust phylogeny of the enterobacterial plant pathogens attainable? Cladistics, 27, 80-93.
    • (2011) Cladistics , vol.27 , pp. 80-93
    • Naum, M.1    Brown, E.W.2    Mason-Gamer, R.J.3
  • 27
    • 84867115259 scopus 로고    scopus 로고
    • Pectinolytic bacteria associated with potato soft rot and blackleg in South Africa and Zimbabwe
    • Ngadze, E., Brady, C. L., Coutinho, T. A., & van der Waals, J. E. (2012). Pectinolytic bacteria associated with potato soft rot and blackleg in South Africa and Zimbabwe. European Journal of Plant Pathology, 134, 533-549.
    • (2012) European Journal of Plant Pathology , vol.134 , pp. 533-549
    • Ngadze, E.1    Brady, C.L.2    Coutinho, T.A.3    van der Waals, J.E.4
  • 28
    • 84898619516 scopus 로고    scopus 로고
    • First report of Pectobacterium carotovorum subsp. brasiliense causing soft rot and blackleg diseases of potatoes in Kenya
    • doi:10.1094/PDIS-09-13-0988-PDN
    • Onkendi, E., Maluleke, N., & Moleleki, L. N. (2013). First report of Pectobacterium carotovorum subsp. brasiliense causing soft rot and blackleg diseases of potatoes in Kenya. Plant Disease. doi: 10. 1094/PDIS-09-13-0988-PDN.
    • (2013) Plant Disease
    • Onkendi, E.1    Maluleke, N.2    Moleleki, L.N.3
  • 29
    • 0036181156 scopus 로고    scopus 로고
    • Potato diseases caused by soft rot erwinias: an overview of pathogenesis
    • Pérombelon, M. C. M. (2002). Potato diseases caused by soft rot erwinias: an overview of pathogenesis. Plant Pathology, 51, 1-12.
    • (2002) Plant Pathology , vol.51 , pp. 1-12
    • Pérombelon, M.C.M.1
  • 30
    • 33750035412 scopus 로고    scopus 로고
    • atroseptica (Pectobacterium carotovorum subsp. atrosepticum) on potatoes: a laboratory manual. Scottish Crop Research Institute, publication No. 10
    • Perombelon, M. C. M., & van der Wolf, J. M. (1998). Methods for the detection and quantification of Erwinia carotovora subsp. atroseptica (Pectobacterium carotovorum subsp. atrosepticum) on potatoes: a laboratory manual. Scottish Crop Research Institute, publication No. 10.
    • (1998) Methods for the detection and quantification of Erwinia carotovora subsp
    • Perombelon, M.C.M.1    van der Wolf, J.M.2
  • 31
    • 0027252653 scopus 로고
    • A small diffusible signal molecule is responsible for the global control of virulence and exoenzyme production in the plant pathogen Erwinia carotovora
    • Pirhonen, M., Flego, D., Heikinheimo, R., & Palva, E. T. (1993). A small diffusible signal molecule is responsible for the global control of virulence and exoenzyme production in the plant pathogen Erwinia carotovora. The EMBO Journal, 12, 2467-2476.
    • (1993) The EMBO Journal , vol.12 , pp. 2467-2476
    • Pirhonen, M.1    Flego, D.2    Heikinheimo, R.3    Palva, E.T.4
  • 32
    • 52949152949 scopus 로고    scopus 로고
    • Biochemical and genetic diversity of pectolytic enterobacteria causing soft rot disease of potatoes in New Zealand
    • Pitman, A. R., Wright, P. J., Galbraith, M. D., & Harrow, S. A. (2008). Biochemical and genetic diversity of pectolytic enterobacteria causing soft rot disease of potatoes in New Zealand. Australasian Plant Pathology, 37, 559-568.
    • (2008) Australasian Plant Pathology , vol.37 , pp. 559-568
    • Pitman, A.R.1    Wright, P.J.2    Galbraith, M.D.3    Harrow, S.A.4
  • 33
    • 76449105022 scopus 로고    scopus 로고
    • Genetic characterisation of Pectobacterium wasabiae causing soft rot disease of potato in New Zealand
    • Pitman, A. R., Harrow, S. A., & Visnovsky, S. B. (2010). Genetic characterisation of Pectobacterium wasabiae causing soft rot disease of potato in New Zealand. European Journal of Plant Pathology, 126, 423-435.
    • (2010) European Journal of Plant Pathology , vol.126 , pp. 423-435
    • Pitman, A.R.1    Harrow, S.A.2    Visnovsky, S.B.3
  • 34
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada, D., & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics Application Note, 14, 817-818.
    • (1998) Bioinformatics Application Note , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 35
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology, 28, 2731-2739.
    • (2011) Molecular Biology , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 36
    • 53949120872 scopus 로고    scopus 로고
    • Diseased tissues in soil and its role as inoculum for soft rot of Chinese cabbage (Brassica campestris, Pekinensis group)
    • Togashi, J., Uedal, K., & Namai, T. (2001). Diseased tissues in soil and its role as inoculum for soft rot of Chinese cabbage (Brassica campestris, Pekinensis group). Journal of General Plant Pathology, 67, 45-50.
    • (2001) Journal of General Plant Pathology , vol.67 , pp. 45-50
    • Togashi, J.1    Uedal, K.2    Namai, T.3
  • 37
    • 0033397532 scopus 로고    scopus 로고
    • Evaluation of phenotypic and molecular typing techniques for determining diversity in Erwinia carotovora subsp. atroseptica
    • Toth, I. K., Bertheau, Y., Hyman, L. J., Laplaze, L., López, M. M., McNicol, J., et al. (1999). Evaluation of phenotypic and molecular typing techniques for determining diversity in Erwinia carotovora subsp. atroseptica. Journal of Applied Microbiology, 87, 770-781.
    • (1999) Journal of Applied Microbiology , vol.87 , pp. 770-781
    • Toth, I.K.1    Bertheau, Y.2    Hyman, L.J.3    Laplaze, L.4    López, M.M.5    McNicol, J.6
  • 38
    • 0035464185 scopus 로고    scopus 로고
    • Rapid identification and differentiation of the soft rot Erwinias by 16S-23S intergenic transcribed spacer-PCR and restriction fragment length polymorphism analyses
    • Toth, I. K., Avrova, A. O., & Hyman, L. J. (2001). Rapid identification and differentiation of the soft rot Erwinias by 16S-23S intergenic transcribed spacer-PCR and restriction fragment length polymorphism analyses. Applied and Environmental Microbiology, 67, 4070-4076.
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 4070-4076
    • Toth, I.K.1    Avrova, A.O.2    Hyman, L.J.3
  • 41
    • 2442674450 scopus 로고    scopus 로고
    • Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence
    • Yap, M.-N., Barak, J. D., & Charkowski, A. O. (2004). Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence. Applied and Environmental Microbiology, 70, 3013-3023.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 3013-3023
    • Yap, M.-N.1    Barak, J.D.2    Charkowski, A.O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.