Polyphasic characterization of Trichocoleus desertorum sp. nov. (Pseudanabaenales, Cyanobacteria) from desert soils and phylogenetic placement of the genus Trichocoleus

Phytotaxa

Volumn 163, Issue 5, 2014, Pages 241-261

  Mühlsteinová, Radka ^a,b   Johansen, Jeffrey R ^a,b   Pietrasiak, Nicole ^a   Martin, Michael P ^a   Osorio Santos, Karina ^a,c   Warren, Steven D ^d  

^a JOHN CARROLL UNIVERSITY   (United States)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^d USDA FOREST SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84901919426     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.163.5.1     Document Type: Article

References (54)

1. Anagnostidis, K. (2001) Nomenclatural changes in cyanoprokaryotic order Oscillatoriales. Preslia 73: 359-375.
2. Anagnostidis, K. & Komárek, J. (1988) Modern approach to the classification system of cyanophytes. 3. Oscillatoriales. Archiv für Hydrobiologie, Supplement 80: 327-472.
3. Azúa-Bustos, A., González-Silva, C., Mancilla, R.A., Salas, L., Gómez-Silva, B., McKay, C.P. & Vicuña, R. (2011) Hypolithic cyanobacteria supported mainly by fog in the Coastal Range of the Atacama Desert. Microbial Ecology 61: 568-581. http://dx.doi.org/10.1007/s00248-010-9784-5
4. Belnap, J. & Gardner, J.S. (1993) Soil microstructure in soils of the Colorado Plateau: The role of the cyanobacteriumMicrocoleus vaginatus. Great Basin Naturalist 53: 40-47.
5. Bohunická, M., Johansen, J.R. & Fučíková, K. (2011) Tapinothrix clintonii sp. nov. (Pseudanabaenaceae, Cyanobacteria), anew species at the nexus five genera. Fottea 11: 127-140.
6. Boyer, S.L., Flechtner, V.R. & Johansen, J.R. (2001) Is the 16S-23S rRNA internal transcribed spacer region a good tool for usein molecular systematics and population genetics? A case study in cyanobacteria. Molecular Biology and Evolution 18: 1057-1069. http://dx.doi.org/10.1093/oxfordjournals.molbev.a003877
7. Boyer, S.L., Johansen, J.R., Flechtner, V.R. & Howard, G.L. (2002) Phylogeny and genetic variance in terrestrialMicrocoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23SITS region. Journal of Phycology 38: 1222-1235. http://dx.doi.org/10.1046/j.1529-8817.2002.01168.x
8. Büdel, B., Darienko, T., Deutschewitz, K., Dojani, S., Friedl, T., Mohr, K., Salisch, M., Reisser, W. & Weber, B. (2009) Southern African biological soil crusts are ubiquitous and highly diverse in drylands, being restricted by rainfall frequency. Microbial Ecology 57: 229-247. http://dx.doi.org/10.1007/s00248-008-9449-9
9. Carmichael, W.W. (1986) Isolation, culture and toxicity testing of toxic freshwater cyanobacteria (blue-green algae) In: Shilov, V. (eds.) Fundamental Research in Homogenous Catalysis 3. Gordon & Breach, New York, 1249-1262.
10. Casamatta, D.A., Johansen, J.R., Vis, M.L. & Broadwater, S.T. (2005) Molecular and ultrastructural characterization often polar and near-polar strains within the Oscillatoriales (Cyanobacteria). Journal of Phycology 41: 421-438. http://dx.doi.org/10.1111/j.1529-8817.2005.04062.x
11. De Clerck, O., Guiry, M.D., Leliaert, F., Samyn, Y. & Verbruggen, H. (2013) Algal taxonomy: A road to nowhere?Journal of Phycology 49: 215-225. http://dx.doi.org/10.1111/jpy.12020
12. Evans, R.D. & Johansen, J.R. (1999) Microbiotic crusts and ecosystem processes. Critical Reviews in Plant Sciences 18: 183-225. http://dx.doi.org/10.1016/S0735-2689(99)00384-6
13. Flechtner, V.R., Boyer, S.L., Johansen, J.R. & Denoble, M.L. (2002) Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils. Nova Hedwigia 74: 1-24. http://dx.doi.org/10.1127/0029-5035/2002/0074-0001
14. Flechtner, V.R., Johansen, J.R. & Belnap, J. (2008) The biological soil crusts of the San Nicolas Island: enigmatic algaefrom a geographically isolated ecosystem. Western North American Naturalist 68: 405-436. http://dx.doi.org/10.3398/1527-0904-68.4.405
15. Forti, A. (1907) Myxophyceae. In: De Toni J.B. (ed.) Sylloge algarum omnium. Vol. V. Padova, 761 pp.
16. Garcia-Pichel, F., Lopez-Cortes, A. & Nubel, U. (2001) Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau. Applied and Environmental Microbiology 67: 1902-1910. http://dx.doi.org/10.1128/AEM.67.4.1902-1910.2001
17. Garcia-Pichel, F. & Wojciechowski, M.F. (2009) The evolution of a capacity to build supra-cellular ropes enabled filamentous cyanobacteria to colonize erodible substrates. PLoS ONE 4: e7801. http://dx.doi.org/10.1371/journal.pone.0007801.
18. Gomont, M. (1892) Monographie des Oscillariées (Nostocacées homocystées). Annales des Sciences Naturelles, Botanique, Séries 7 15: 263-368.
19. Hoffmann, L., Komárek, J. & Kaštovský, J. (2005) System of cyanoprokaryotes (cyanobacteria)-state in 2004. Algological Studies 117: 95-115. http://dx.doi.org/10.1127/1864-1318/2005/0117-0095
20. Johansen, J.R. & Casamatta, D.A. (2005) Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algological Studies 117: 71-93. http://dx.doi.org/10.1127/1864-1318/2005/0117-0071
21. Johansen, J.R., Kovacik, L., Casamatta, D.A., Fučíková, K. & Kaštovsky, J. (2011) Utility of 16S-23S ITS sequence and secondary structure for recognition of intrageneric and intergeneric limits within cyanobacterial taxa: Leptolyngbya corticola sp. nov. (Pseudanabaenaceae, Cyanobacteria). Nova Hedwigia 92: 283-302. http://dx.doi.org/10.1127/0029-5035/2011/0092-0283
22. Johansen, J.R., Olsen, C.E., Lowe, R.L., Fučíková, K. & Casanatta, D.A. (2008) Leptolyngbya species from selected seep walls in the Great Smoky Mountains National Park. Algological Studies 126: 21-36. http://dx.doi.org/10.1127/1864-1318/2008/0126-0021
23. Johansen, J.R., Řeháková, K. & Acker, F. (2011) Tapinothrix ozarkiana sp. nov., with notes on distribution for the genus in North America. Fottea 11: 141-148.
24. Johansen, J.R., St. Clair, L.L., Webb, B.L. & Nebeker, G.T. (1984) Recovery patterns of cryptogamic soil crusts in desert rangelands following fire disturbance. The Bryologist 87: 238-243. http://dx.doi.org/10.2307/3242798
25. Karsten, U. & Garcia-Pichel, F. (1996) Carotenoids and mycosporine-like amino acid compounds in members of the genusMicrocoleus (Cyanobacteria): A chemosystematic study. Systematic and Applied Microbiology 19: 285-294. http://dx.doi.org/10.1016/s0723-2020(96)80054-3
26. Kaštovský, J. & Johansen, J.R. (2008) Mastigocladus laminosus (Stigonematales, Cyanobacteria): phylogeneticrelationship of strains from thermal springs to soil-inhabiting genera of the order and taxonomic implications for thegenus. Phycologia 47: 307-320. http://dx.doi.org/10.2216/ph07-69.1
27. Komárek, J. & Anagnostidis, K. (2005) Cyanoprokaryota II. In: Büdel, B., Krienitz, L., Gärtner, G. & Schagerl, M. (eds.)Süsswasserflora von Mittleuropa 19/2. Elsevier/Spektrum, München, 759 pp.
28. Lange, O.L., Kidron, G.J., Büdel, B., Meyer, A., Killian, E. & Abeliovich, A. (1992) Taxonomic composition and photosynthetic characteristics of the "biological soil crusts" covering sand dunes in western Negev Desert. Functional Ecology 6: 519-527. http://dx.doi.org/10.2307/2390048
29. Lange, O.L., Meyer, A. & Büdel, B. (1994) Net photosynthesis activation of a desiccated cyanobacterium without liquid water in high air humidity alone. Experiments with Microcoleus sociatus isolated from a desert soil crust. Functional Ecology 8: 52-57. http://dx.doi.org/10.2307/2390111
30. Li, Z. & Brand, J. (2007) Leptolyngbya nodulosa sp. nov. (Oscillatoriaceae), a subtropical marine cyanobacterium that produces a unique multicellular structure. Phycologia 46: 396-401. http://dx.doi.org/10.2216/06-89.1
31. Lukešová, A., Johansen, J.R., Martin, M.P. & Casamatta, D.A. (2009) Aulosira bohemensis sp. nov.: further phylogeneticuncertainty at the base of the Nostocales (Cyanobacteria). Phycologia 48: 118-129. http://dx.doi.org/10.2216/08-56.1
32. Maya, Y., Lopez-Cortes, A. & Soeldner, A. (2002) Cyanobacterial microbiotic crusts in eroded soils of a tropical dryforest in the Baja California peninsula, Mexico. Geomicrobiology Journal 19: 505-518. http://dx.doi.org/10.1080/01490450290098469
33. Mühlsteinová, R., Johansen, J.R., Pietrasiak, N. & Martin, P.M. (2014) Polyphasic characterization of Kastovskya adunca gen. nov. et comb. nov. (Cyanobacteria: Oscillatoriales), from desert soils of the Atacama Desert, Chile. Phytotaxa (accepted).
34. Navarro-González, R., Rainley, F.A., Molina, P., Bagaley, D.R., Hollen, B.J., De La Rosa, J., Small, A.M., Quinn, R.C., Grunthaner, F.J., Cáceres, L., Gomez-Silva, B. & McKay, C.P. (2003) Mars-like soils in the Atacama Desert, Chile, and the dry limit of microbial life. Science 302: 1018-1021. http://dx.doi.org/10.1126/science.1089143
35. Page, R.D.M. (2012) Dark taxa: GenBank in a post-taxonomic world. Available at http://iphylo.blogspot.be/2011/04/dark-taxa-genbank-in-post-taxonomic.html (last accessed June 19, 2013)
36. Pearson, J.E. & Kingsbury, J.M. (1966) Culturally induced variation in four morphologically diverse bluegreen algae. American Journal of Botany 53: 192-200. http://dx.doi.org/10.2307/2440088
37. Perkerson III, R.B., Johansen, J.R., Kováčik, L., Brand, J., Kaštovský, J. & Casamatta, D.A. (2011) A uniquePseudanabaenalean (Cyanobacteria) genus Nodosilinea gen. nov. based on morphological and molecular data. Journal of Phycology 47: 1397-1412. http://dx.doi.org/10.1111/j.1529-8817.2011.01077.x
38. Phillipson, J. (1935) Some algae of Victorian soils. Proceedings of the Royal Society of Victoria 47: 262-287.
39. Rambaut, A. (2007) Fig Tree. Available at http://tree.bio.ed.ac.uk/software/figtree (last accessed 28 February 2014)
40. Řeháková, K., Johansen, J.R., Casamatta, D.A., Li, X. & Vincent, J. (2007) Morphological and molecularcharacterization of selected desert soil cyanobacteria: Three species new to science including Mojavia pulchra gen. et sp. nov. Phycologia 46: 481-502. http://dx.doi.org/10.2216/06-92.1
41. Rippka, R., Waterbury, J. & Cohez-Bazire, G. (1974) A cyanobacterium which lacks thylakoids. Archives for Microbiology 100: 419-436. http://dx.doi.org/10.1007/bf00446333
42. Sauvageau, C. (1892) Sur les algues d'eau douce recoltées en Algérie pendant le session de la Societé Botanique en 1892. Bulletin de la Société Botanique de France 39: CIV-CXXVIII.
43. Siegesmund, M.A., Johansen, J.R., Karsten, U. & Friedl, T. (2008) Coleofasciculus gen. nov. (Cyanobacteria): Morphological and molecular criteria for revision of the genus Microcoleus Gomont. Journal of Phycology 44: 1572-1585. http://dx.doi.org/10.1111/j.1529-8817.2008.00604.x
44. Starkenburg, S.R., Reitenga, K.G., Freitas, T., Johnson, S., Chain, P.S.G., Garcia-Pichel, F. & Kuske, C.R. (2011) Genome of the Cyanobacterium Microcoleus vaginatus FGP-2, a Photosynthetic Ecosystem Engineer of Arid Land Soil Biocrusts Worldwide. Journal of Bacteriology 193: 4569-4570. http://dx.doi.org/10.1128/jb.05138-11
45. Strunecký, O., Elster, J. & Komárek, J. (2011) Taxonomic revision of the freshwater cyanobacterium "Phormidium" murrayi =Wilmottia murrayi. Fottea 11: 57-71.
46. Strunecký, O., Komárek, J., Johansen, J.R., Lukešová, A. & Elster, J. (2013) Molecular and morphological criteria forrevision of the genus Microcoleus and its relation to Phormidium autumnale, Cyanobacteria. Journal of Phycology 49: 1167-1180. http://dx.doi.org/10.1111/jpy.12128
47. Swofford, D.L. (1998) PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods). Sinauer Associates, Sunderland.
48. Vaucher, J.P.E. (1803) Histoire des conferves d'eau douce contenant leurs différens modes de reproduction, et la description de leurs principales espèces, suivie de l'histoire des trémelles et des ulves d'eau douce. J.J. Paschoud, Geneva, 285 pp. http://dx.doi.org/10.5962/bhl.title.11425
49. Warren-Rhodes, K.A., Dungan, J.L., Piatek, J., Stubbs, K., Gomez-Silva, B., Chen, Y. & McKay, C.P. (2007) Ecology and spatial pattern of cyanobacterial community island patches in the Atacama Desert, Chile. Journal of Geophysical Research 112: G04S15. http://dx.doi.org/10.1029/2006jg000305
50. West, W. & West, G.S. (1896) On some new and interesting freshwater algae. Journal of the Royal Microscopical Society 16: 149-156. http://dx.doi.org/10.1111/j.1365-2818.1896.tb00891.x
51. West, W. & West, G.S. (1897) Welwitsch's African freshwater algae. Journal of Botany 35: 264-272.
52. Wierzchos, J., Ascaso, C. & McKay, C.P. (2006) Endolithic cyanobacteria in halite rocks from the hyperarid core of theAtacama Desert. Astrobiology 6: 415-422. http://dx.doi.org/10.1089/ast.2006.6.415
53. Zammit, G., Billi, D. & Albertano, P. (2012) The subaerophytic cyanobacterium Oculatella subterranea (Oscillatoriales, Cyanophyceae) gen. et sp. nov.: a cytomorphological and molecular description. European Journal of Phycology 47: 341-354. http://dx.doi.org/10.1080/09670262.2012.717106
54. Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acid Research 31: 3406-3415. http://dx.doi.org/10.1093/nar/gkg595