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Volumn 92, Issue 3-4, 2011, Pages 283-302

Utility of 16S-23S ITS sequence and secondary structure for recognition of intrageneric and intergeneric limits within cyanobacterial taxa: Leptolyngbya corticola sp. nov. (pseudanabaenaceae, cyanobacteria)

Author keywords

16S rDNA; 16S 23S ITS; Cyanobacteria; Leptolyngbya; Pseudanabaenaceae; rRNA secondary structure; Systematics

Indexed keywords

ANAGNOSTIDIS; CYANOBACTERIA; LEPTOLYNGBYA; LEPTOLYNGBYA ANGUSTATA; LEPTOLYNGBYA BORYANA; LEPTOLYNGBYA FOVEOLARUM; LEPTOLYNGBYA TENERRIMA; LYNGBYA; OSCILLATORIALES;

EID: 79959704725     PISSN: 00295035     EISSN: None     Source Type: Journal    
DOI: 10.1127/0029-5035/2011/0092-0283     Document Type: Article
Times cited : (134)

References (43)
  • 1
    • 0039329871 scopus 로고
    • Is the genus Leptolyngbya (Cyanophyte) a homogenous taxon?
    • ALBERTANO, P. & L. KOVACIK (1994): Is the genus Leptolyngbya (Cyanophyte) a homogenous taxon?, Algol. Stud. 75: 37-51.
    • (1994) Algol. Stud. , vol.75 , pp. 37-51
    • Albertano, P.1    Kovacik, L.2
  • 2
    • 0347389588 scopus 로고    scopus 로고
    • Nomenclatural changes in cyanoprokaryotic order Oscillatoriales
    • ANAGNOSTIDIS, K. (2001): Nomenclatural changes in cyanoprokaryotic order Oscillatoriales., Preslia, Praha 73: 359-375.
    • (2001) Preslia, Praha , vol.73 , pp. 359-375
    • Anagnostidis, K.1
  • 3
    • 0000026049 scopus 로고
    • Modern approach to the classification system of the Cyanophytes 3: Oscillatoriales
    • ANAGNOSTIDIS, K. & J. KOMÁREK (1988): Modern approach to the classification system of the Cyanophytes 3: Oscillatoriales., Algol. Stud. 50/53: 327-472.
    • (1988) Algol. Stud. , vol.50 , Issue.53 , pp. 327-472
    • Anagnostidis, K.1    Komárek, J.2
  • 4
    • 0034993578 scopus 로고    scopus 로고
    • Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria
    • BOYER, S., V.R. FLECHTNER & J.R. JOHANSEN (2001): Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria., Mol. Biol. Evol. 18: 1057-1069.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1057-1069
    • Boyer, S.1    Flechtner, V.R.2    Johansen, J.R.3
  • 5
    • 0036926698 scopus 로고    scopus 로고
    • Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region
    • BOYER, S., J.R. JOHANSEN & V.R. FLECHTNER (2002): Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region., J. Phycol. 38: 1222-1235.
    • (2002) J. Phycol. , vol.38 , pp. 1222-1235
    • Boyer, S.1    Johansen, J.R.2    Flechtner, V.R.3
  • 6
    • 0001433259 scopus 로고
    • Isolation, culture, and toxicity testing of toxic freshwater cyanobacteria (blue-green algae)
    • In: SHILOV, V. (ed.), Gordon & Breach, New York, NY
    • CARMICHAEL, W.W. (1986): Isolation, culture, and toxicity testing of toxic freshwater cyanobacteria (blue-green algae)., In: SHILOV, V. (ed.): Fundamental. Research in Homogenous Catalysis, Vol. 3:1249-1262. Gordon & Breach, New York, NY.
    • (1986) Fundamental. Research in Homogenous Catalysis , vol.3 , pp. 1249-1262
    • Carmichael, W.W.1
  • 7
    • 80355145934 scopus 로고    scopus 로고
    • Current velocity and nutrient level effects on the morphology of Phormidium retzii (Cyanobacteria) in artificial stream mesocosms
    • CASAMATTA, D.A. & M.L. VIS (2004): Current velocity and nutrient level effects on the morphology of Phormidium retzii (Cyanobacteria) in artificial stream mesocosms., Algol. Stud. 113: 87-99.
    • (2004) Algol. Stud. , vol.113 , pp. 87-99
    • Casamatta, D.A.1    Vis, M.L.2
  • 8
    • 0345598047 scopus 로고    scopus 로고
    • Cryptic species in cyanobacterial systematics: A case study of Phormidium retzii (Oscillatoriales) using RAPD molecular markers and 16S rDNA sequence data
    • CASAMATTA, D.A., M.L. VIS & R.G. SHEATH (2003): Cryptic species in cyanobacterial systematics: a case study of Phormidium retzii (Oscillatoriales) using RAPD molecular markers and 16S rDNA sequence data., Aquat. Bot. 77: 295-309.
    • (2003) Aquat. Bot. , vol.77 , pp. 295-309
    • Casamatta, D.A.1    Vis, M.L.2    Sheath, R.G.3
  • 9
    • 33645330687 scopus 로고    scopus 로고
    • Rexia erecta gen. et sp. nov. and Capsosira lowei sp. nov., two newly described cyanobacterial taxa from the Great Smoky Mountain National Park (USA)
    • CASAMATTA, D.A., S.R. GOMEZ & J.R. JOHANSEN (2006): Rexia erecta gen. et sp. nov. and Capsosira lowei sp. nov., two newly described cyanobacterial taxa from the Great Smoky Mountain National Park (USA)., Hydrobiologia 561: 13-26.
    • (2006) Hydrobiologia , vol.561 , pp. 13-26
    • Casamatta, D.A.1    Gomez, S.R.2    Johansen, J.R.3
  • 10
    • 17744371519 scopus 로고    scopus 로고
    • Molecular and morphological characterization of ten polar and near-polar strains within the Oscillatoriales (Cyanobacteria)
    • CASAMATTA, D.A., J.R. JOHANSEN, M.L. VIS & S.T. BROADWATER (2005): Molecular and morphological characterization of ten polar and near-polar strains within the Oscillatoriales (Cyanobacteria)., J. Phycol. 41: 421-438.
    • (2005) J. Phycol. , vol.41 , pp. 421-438
    • Casamatta, D.A.1    Johansen, J.R.2    Vis, M.L.3    Broadwater, S.T.4
  • 11
    • 0000518282 scopus 로고    scopus 로고
    • General characteristics of the cyanobacteria
    • In: BOONE, D.R. & R.W. CASTENHOLZ (eds.), 2nd edition, Springer, New York
    • CASTENHOLZ, R.W. (2001): General characteristics of the cyanobacteria., In: BOONE, D.R. & R.W. CASTENHOLZ (eds.): Bergey's manual of systematic bacteriology, 2nd edition, volume 1: 474-487. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 474-487
    • Castenholz, R.W.1
  • 12
    • 33846225513 scopus 로고    scopus 로고
    • Relationships between the Arctic and Antarctic cyanobacteria; three Phormidium-like strains evaluated by a polyphasic approach
    • COMTE, K., M. ŠABACKÁ, A. Carré-Mlouka, J. ELSTER & J. KOMÁREK (2007): Relationships between the Arctic and Antarctic cyanobacteria; three Phormidium-like strains evaluated by a polyphasic approach., FEMS Microbiol. Ecol. 59: 366-376.
    • (2007) FEMS Microbiol. Ecol. , vol.59 , pp. 366-376
    • Comte, K.1    Šabacká, M.2    Carré-Mlouka, A.3    Elster, J.4    Komárek, J.5
  • 13
    • 80355132917 scopus 로고
    • Monographia algarum cyanophycearum aquidulcium et terrestrium in finibus URSS inventarum. izd
    • ELENKIN, A.A. (1949): Monographia algarum cyanophycearum aquidulcium et terrestrium in finibus URSS inventarum. izd., AN SSSR, Moskva-Leningrad.
    • (1949) AN SSSR, Moskva-Leningrad
    • Elenkin, A.A.1
  • 14
    • 44849133186 scopus 로고    scopus 로고
    • Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts
    • ERWIN, P.M. & R.W. THACKER (2008): Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts., Mol. Ecol. 17: 2937-2947.
    • (2008) Mol. Ecol. , vol.17 , pp. 2937-2947
    • Erwin, P.M.1    Thacker, R.W.2
  • 15
    • 0031442414 scopus 로고    scopus 로고
    • Inducible defense against a ciliate grazer, Pseudomicrothorax dubius, in two strains of Phormidium (cyanobacteria)
    • FIALKOWSKA, E. & A. Pajdak-Stos (1997): Inducible defense against a ciliate grazer, Pseudomicrothorax dubius, in two strains of Phormidium (cyanobacteria)., Proc. Royal Soc. London B 264: 937-941.
    • (1997) Proc. Royal Soc. London B. , vol.264 , pp. 937-941
    • Fialkowska, E.1    Pajdak-Stos, A.2
  • 17
    • 0036321215 scopus 로고    scopus 로고
    • Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae) a new cyanobacterial genus from arid soils
    • FLECHTNER, V.R., S.L. BOYER, J.R. JOHANSEN & M.L. DENOBLE (2002): Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae) a new cyanobacterial genus from arid soils., Nova Hedwigia 74: 1-24.
    • (2002) Nova Hedwigia , vol.74 , pp. 1-24
    • Flechtner, V.R.1    Boyer, S.L.2    Johansen, J.R.3    Denoble, M.L.4
  • 18
    • 13544254299 scopus 로고    scopus 로고
    • Genetic diversity of Cylindrospermopsis strains (Cyanobacteria) isolated from four continents
    • GUGGER, M., R. MOLICA, B. LE BERRE, P. DUFOUR, C. BERNARD & J.-F. HUMBERT (2005): Genetic diversity of Cylindrospermopsis strains (Cyanobacteria) isolated from four continents., Environ. Microbiol. 71: 1097-1100.
    • (2005) Environ. Microbiol. , vol.71 , pp. 1097-1100
    • Gugger, M.1    Molica, R.2    Berre, B.L.E.3    Dufour, P.4    Bernard, C.5    Humbert, J.-F.6
  • 19
    • 0034129537 scopus 로고    scopus 로고
    • Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria
    • ITEMAN, I., R. RIPPKA, N. Tandeau de Marsac & M. HERDMAN (2000): Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria., Microbiology 146: 1275-86.
    • (2000) Microbiology , vol.146 , pp. 1275-1286
    • Iteman, I.1    Rippka, R.2    de Marsac, N.T.3    Herdman, M.4
  • 20
    • 57449102039 scopus 로고    scopus 로고
    • Leptolyngbya species from selected seep walls in the Great Smoky Mountains National Park
    • JOHANSEN, J.R., C.E. OLSEN, R.L. LOWE, K. Fučíková & D.A. Casamatta (2008): Leptolyngbya species from selected seep walls in the Great Smoky Mountains National Park., Algol. Stud. 126: 21-36.
    • (2008) Algol. Stud. , pp. 21-36
    • Johansen, J.R.1    Olsen, C.E.2    Lowe, R.L.3    Fučíková, K.4    Casamatta, D.A.5
  • 21
    • 17744392339 scopus 로고    scopus 로고
    • Recognizing cyanobacterial diversity through adoption of a new species paradigm
    • JOHANSEN, J.R. & D.A. CASAMATTA (2005): Recognizing cyanobacterial diversity through adoption of a new species paradigm., Algol. Stud. 117: 71-93.
    • (2005) Algol. Stud. , vol.117 , pp. 71-93
    • Johansen, J.R.1    Casamatta, D.A.2
  • 22
    • 34447492957 scopus 로고
    • Temperaturbedingte morphologische variabilität bei drei Phormidium-Arten (Cyanophyceae) in Kulturen
    • KOMAREK, J. (1972): Temperaturbedingte morphologische variabilität bei drei Phormidium-Arten (Cyanophyceae) in Kulturen., Preslia, Praha 44: 293-307.
    • (1972) Preslia, Praha , vol.44 , pp. 293-307
    • Komarek, J.1
  • 23
    • 29844440620 scopus 로고    scopus 로고
    • Cyanoprokaryota. 2. Teil: Oscillatoriales
    • In: BÜDEL, B., L. KRIENITZ, G. GÄRTNER & M. SCHAGERL (eds.), Elsevier Spektrum Akademischer Verlag, München
    • KOMAREK, J. & K. ANAGNOSTIDIS (2005): Cyanoprokaryota. 2. Teil: Oscillatoriales., In: BÜDEL, B., L. KRIENITZ, G. GÄRTNER & M. SCHAGERL (eds.): Süsswasserflora von Mitteleuropa, 19/2: 1-759. Elsevier Spektrum Akademischer Verlag, München.
    • (2005) Süsswasserflora Von Mitteleuropa , vol.19 , Issue.2 , pp. 1-759
    • Komarek, J.1    Anagnostidis, K.2
  • 24
    • 63449111536 scopus 로고    scopus 로고
    • Aulosira bohemensis sp. nov. (Nostocales, Cyanobacteria)
    • LUKEŠOVÁ, A., J.R. JOHANSEN & D.A CASAMATTA (2009): Aulosira bohemensis sp. nov. (Nostocales, Cyanobacteria)., Phycologia 48: 118-129.
    • (2009) Phycologia , vol.48 , pp. 118-129
    • Lukešová, A.1    Johansen, J.R.2    Casamatta, D.A.3
  • 26
    • 34247113237 scopus 로고    scopus 로고
    • Genotypic and phenotypic diversity of cyanobacteria assigned to the genus Phormidium (Oscillatoriales) from different habitats and geographical sites
    • MARQUARDT, J. & K.A. PALINSKA (2007): Genotypic and phenotypic diversity of cyanobacteria assigned to the genus Phormidium (Oscillatoriales) from different habitats and geographical sites., Archives of Microbiology 187(5): 397-413.
    • (2007) Archives of Microbiology , vol.187 , Issue.5 , pp. 397-413
    • Marquardt, J.1    Palinska, K.A.2
  • 27
    • 0343247819 scopus 로고    scopus 로고
    • PCR primers to amplify 16S rRNA genes from cyanobacteria
    • NÜBEL, U., F. Garcia-Pichel & G. MUYZER (1997): PCR primers to amplify 16S rRNA genes from cyanobacteria., Appl. Environ. Microbiol. 63: 3327-3332.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3327-3332
    • Nübel, U.1    Garcia-Pichel, F.2    Muyzer, G.3
  • 28
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • POSADA, D. & K.A. CRANDALL (1998): MODELTEST: testing the model of DNA substitution., Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 29
    • 35048883558 scopus 로고    scopus 로고
    • Morphological and molecular characterization of selected desert soil cyanobacteria: Three species new to science including Mojavia pulchra gen. et sp. nov
    • Řeháková, K., J. Johansen, D.A. Casamatta, L. Xuesong & J. Vincent (2007): Morphological and molecular characterization of selected desert soil cyanobacteria: three species new to science including Mojavia pulchra gen. et sp. nov., Phycologia 46: 481-502.
    • (2007) Phycologia , vol.46 , pp. 481-502
    • Řeháková, K.1    Johansen, J.2    Casamatta, D.A.3    Xuesong, L.4    Vincent, J.5
  • 30
    • 0018409915 scopus 로고
    • Generic assignments, strain histories and properties of pure cultures of cyanobacteria
    • RIPPKA, R., J. DERUELLES, J.B. WATERBURY, M. HERDMAN & R.Y. STANIER (1979): Generic assignments, strain histories and properties of pure cultures of cyanobacteria., J. Gen. Microbiol. 111: 1-61.
    • (1979) J. Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.B.3    Herdman, M.4    Stanier, R.Y.5
  • 31
    • 57449114043 scopus 로고    scopus 로고
    • Coleofasciculus gen. nov. (Cyanobacteria): Morphological and molecular criteria for revision of Microcoleus Gomont
    • SIEGESMUND, M.A, J.R. JOHANSEN & T. FRIEDL (2008): Coleofasciculus gen. nov. (Cyanobacteria): morphological and molecular criteria for revision of Microcoleus Gomont., J. Phycol. 44: 1572-1585.
    • (2008) J. Phycol. , vol.44 , pp. 1572-1585
    • Siegesmund, M.A.1    Johansen, J.R.2    Friedl, T.3
  • 32
    • 0343183958 scopus 로고    scopus 로고
    • Differentiation of newly described Antarctic bacterial isolates related to Roseobacter species based on 16S-23S rDNA internal transcribed spacer sequences
    • SÖLLER, R., P. HIRSCH, D. BLOHM & M. LABRENZ (2000): Differentiation of newly described Antarctic bacterial isolates related to Roseobacter species based on 16S-23S rDNA internal transcribed spacer sequences., Int. J. Syst. Evol. Microbiol. 50: 909-915
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 909-915
    • Söller, R.1    Hirsch, P.2    Blohm, D.3    Labrenz, M.4
  • 33
    • 0000108770 scopus 로고
    • A low-viscocity resin embedding medium for electron microscopy
    • SPURR, A.R. (1969): A low-viscocity resin embedding medium for electron microscopy., Clin. Microbiol. Rev. 3: 197-218.
    • (1969) Clin. Microbiol. Rev. , vol.3 , pp. 197-218
    • Spurr, A.R.1
  • 34
    • 51649209757 scopus 로고
    • Ernährungsphysiologische Untersuchungen an der planktonischen Blaualge Oscillatoria rubescens
    • STAUB, R. (1961): Ernährungsphysiologische Untersuchungen an der planktonischen Blaualge Oscillatoria rubescens., Schweiz. Z. Hydrol. 23: 82-198.
    • (1961) Schweiz. Z. Hydrol. , vol.23 , pp. 82-198
    • Staub, R.1
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J.D., D.G. HIGGINS & T.J. GIBSON (1994): CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice., Nuc. Acids Res. 22: 4673-80.
    • (1994) Nuc. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0001898435 scopus 로고    scopus 로고
    • Molecular systematics of the oxygenic photosynthetic bacteria
    • TURNER, S. (1997): Molecular systematics of the oxygenic photosynthetic bacteria., Pl. Syst. Evol. [Supplement] 11: 13-52.
    • (1997) Pl. Syst. Evol. , vol.11 , Issue.SUPPL. , pp. 13-52
    • Turner, S.1
  • 39
    • 0033166540 scopus 로고    scopus 로고
    • Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis
    • TURNER, S., K.M. PRYER, V.P.W. MIOA & J.D. PALMER (1999): Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis., J. Eukaryot. Microbiol. 46: 327-338.
    • (1999) J. Eukaryot. Microbiol. , vol.46 , pp. 327-338
    • Turner, S.1    Pryer, K.M.2    Mioa, V.P.W.3    Palmer, J.D.4
  • 40
    • 0002096419 scopus 로고
    • Diversity, ecology and taxonomy of the cyanobacteria
    • In: MANN, N.H. & N.G. CARR (eds.), Plenum Press, New York
    • WHITTON, B.A. (1992): Diversity, ecology and taxonomy of the cyanobacteria. In: MANN, N.H. & N.G. CARR (eds.): Photosynthetic prokaryotes: 1-51. Plenum Press, New York.
    • (1992) Photosynthetic Prokaryotes , pp. 1-51
    • Whitton, B.A.1
  • 41
    • 0027509645 scopus 로고
    • Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518 and phylogenetic analysis
    • WILMOTTE, A., C. VAN DER AUWERA & R. DE WACHTER (1993): Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518 and phylogenetic analysis., FEBS Lett. 317: 96-100.
    • (1993) FEBS Lett , vol.317 , pp. 96-100
    • Wilmotte, A.1    Auwera, C.V.2    de Wachter, R.3
  • 42
    • 0001341969 scopus 로고    scopus 로고
    • Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences
    • In: BOONE, D.R. & R.W. CASTENHOLZ (eds.), Springer, New York, 2nd Edition
    • WILMOTTE, A. & M. HERDMAN (2001): Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences. In: BOONE, D.R. & R.W. CASTENHOLZ (eds.): Bergey's manual of systematic bacteriology, 2nd edition, volume 1: 487-493. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 487-493
    • Wilmotte, A.1    Herdman, M.2
  • 43
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • ZUKER, M. (2003): Mfold web server for nucleic acid folding and hybridization prediction., Nuc. Acids Res. 31: 3406-3415.
    • (2003) Nuc. Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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