The substrate is an important factor in controlling the significance of heterotrophic nitrification in acidic forest soils

Soil Biology and Biochemistry

Volumn 76, Issue , 2014, Pages 143-148

  Zhang, Jinbo ^a,b   Sun, Weijun ^a   Zhong, Wenhui ^a   Cai, Zucong ^a  

^a NANJING NORMAL UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Acidic forest soil; Heterotrophic nitrification; Substrates

Indexed keywords

ACETYLENE; AMINO ACIDS; ATOMS; EXPERIMENTS; FORESTRY; LIGHTING; NITRIFICATION; SOILS;

ACIDIC FOREST SOIL; EASTERN CHINA; HETEROTROPHIC NITRIFICATION; INCUBATION TIME; L-GLUTAMIC ACIDS; LABELED SUBSTRATES; MAIZE STRAW; TRACER EXPERIMENT;

SUBSTRATES;

ACID SOIL; AMINO ACID; FOREST SOIL; HETEROTROPHY; NITRATE; NITRIFICATION; NITROGEN ISOTOPE; STRAW; SUBSTRATE;

ACETYLENE; AMINO ACIDS; ATOMS; EXPERIMENTATION; FORESTRY; ILLUMINATION; SOIL; SUBSTRATES;

CHINA;

EID: 84901827266     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2014.05.001     Document Type: Article

References (35)

1. Aarnio T., Martikainen P.J. Nitrification in forest soil after refertilization with urea or urea and dicyandiamide. Soil Biology and Biochemistry 1992, 24:951-954.
2. 15N pool dilution and enrichment to separate the heterotrophic and autotrophic pathways of nitrification. Soil Biology and Biochemistry 1995, 27:17-22.
3. Daum M., Zimmer W., Papen H., Kloos K., Nawrath K., Bothe H. Physiological and molecular biological characterization of ammonia oxidation of the heterotrophic nitrifier Pseudomonas putida. Current Microbiology 1998, 37:281-288.
4. De Boer W., Kowalchuk G.A. Nitrification in acid soils: micro-organisms and mechanisms. Soil Biology and Biochemistry 2001, 33:853-866.
5. Fauci M.F., Dick R.P. Soil microbial dynamics: short-term and long-term effects of inorganic and organic nitrogen. Soil Science Society of America Journal 1994, 58:801-806.
6. Focht D.D., Verstraete W. Biochemical ecology of nitrification and denitrification. Advances in Microbial Ecology 1977, 1:135-214.
7. Hart S.C., Binkley D., Perry D.A. Influence of red alder on soil nitrogen transformations in two conifer forests of contrasting productivity. Soil Biology and Biochemistry 1997, 29:1111-1123.
8. Honda N., Hirai M., Ano T., Shoda M. Antifungal effect of a heterotrophic nitrifier Alcaligenes faecalis. Biotechnology Letters 1998, 20:703-705.
9. Huygens D., Boeckx P., Templer P., Paulino L., Cleemput O.V., Oyarzún C., Müller C., Godoy R. Mechanisms for retention of bioavailable nitrogen in volcanic rainforest soils. Nature Geoscience 2008, 1:543-548.
10. Hyman M.R., Wood P.M. Suicidal inactivation and labelling of ammonia mono-oxygenase by acetylene. Biochemistry Journal 1985, 227:719-725.
11. Islam A., Chen D., White R.E. Heterotrophic and autotrophic nitrification in two acid pasture soils. Soil Biology and Biochemistry 2007, 39:972-975.
12. Killham K. Heterotrophic nitrification. Special publications for Society for General Microbiology 1986, vol. 20:117-126. IRL Press, Oxford. J.I. Presser (Ed.).
13. Killham K. Anew perfusion system for measurement and characterization of potential rates of soil nitrification. Plant and Soil 1987, 97:267-272.
14. Killham K. Nitrification in coniferous forest soils. Plant and Soil 1990, 128:31-44.
15. Kirkham D., Bartholomew W.V. Equations for following nutrient transformations in soil, utilizing tracer data. Soil Science Society of America Proceedings 1954, 18:33-34.
16. Kreitinger J.P., Klein T.M., Novick N.J., Alexander M. Nitrification and characteristics of nitrifying microorganisms in an acid forest soil. Soil Science Society of America Journal 1985, 49:1407-1410.
17. Levičnik-Höfferle Š., Nicol G.W., Ausec L., Mandić-Mulec I., Prosser J.I. Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen. FEMS Microbiology Ecology 2012, 80:114-123.
18. Lin C., Yang Y., Guo J., Chen G., Xie J. Fine root decomposition of evergreen broadleaved and coniferous tree species in mid-subtropical China: dynamics of dry mass, nutrient and organic fractions. Plant and Soil 2011, 338:311-327.
19. Lu L., Jia Z. Urease gene-containing Archaea dominate autotrophic ammonia oxidation in two acid soils. Environmental Microbiology 2013, 15:1795-1809.
20. Moir J.W.B., Crossman L.C., Spiro S., Richardson D.J. The purification ofammonia mono-oxygenase from Paracoccus denitrificans. FEBS Letters 1996, 387:71-74.
21. 15N tracing models via Monte Carlo sampling. Soil Biology and Biochemistry 2007, 39:715-726.
22. Nishio T., Yoshikura T., Mishima H., Inouye Z., Itoh H. Conditions for nitrification and denitrification by an immobilized heterotrophic bacterium Alcaligenes faecalis OKK17. Journal of Fermentation and Bioengineering 1998, 86:351-356.
23. 15N tracer and pool dilution techniques. Biogeochemistry 1999, 44:135-150.
24. Rho J. Microbial interactions in heterotrophic nitrification. Canadian Journal of Microbiology 1986, 32:243-247.
25. Schmidt E.L. Nitrate formation by Aspergillus flavus in pure and mixed culture environments. Transactions of the 7th International Congress of Soil Science 1960, vol. 2:600-605.
26. Shi W., Norton J.M. Microbial control of nitrate concentrations in an agricultural soil treated with dairy waste compost or ammonium fertilizer. Soil Biology and Biochemistry 2000, 32:1453-1457.
27. Stopnišek N., Gubry-Rangin C., Höfferle Š., Nicol G.W., Mandič-Mulec I., Prosser J.I. Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment. Applied and Environmental Microbiology 2010, 76:7626-7634.
28. Stouthamer A.H., de Boer A.P.N., Van der Oost J., Van Spanning R.J.M. Emerging principles of inorganic nitrogen metabolism in Paracoccus denitrificans and related bacteria. Antonie van Leeuwenhoek 1997, 71:33-41.
29. Stroo H.F., Klein M.T., Alexander M. Heterotrophic nitrification in an acid forest soil and by an acid-tolerant fungus. Applied and Environmental Microbiology 1986, 52:107-111.
30. Verstraete W. Heterotrophic nitrification in soils and aqueous media. Izvestiya Akademii Nauk SSSR Seriya Biologicheskaya 1975, 4:541-558.
31. Weber D.F., Gainey P.L. Relative sensitivity of nitrifying organisms to hydrogen ions in soils and solutions. Soil Science 1962, 94:138-145.
32. Wood P.M. Autotrophic and heterotrophic mechanisms for ammonia oxidation. Soil Use and Management 1990, 6:78-79.
33. Zhang J., Cai Z., Zhu T., Yang W., Müller C. Mechanisms for the retention of inorganic N in acidic forest soils of southern China. Scientific Reports 2013, 3:2342. 10.1038/srep02342.
34. - production mechanism in coniferous but not broad-leaf acid forest soil in subtropical China. Biology and Fertility of Soils 2011, 47:533-542.
35. - production pathway in acid coniferous forest soil in subtropical China. Biology and Fertility of Soils 2013, 49:955-957.