메뉴 건너뛰기




Volumn 39, Issue 7, 2014, Pages 720-729

Altered retinal MicroRNA expression profiles in early diabetic retinopathy: An in silico analysis

Author keywords

Bioinformatics; Diabetic retinopathy; GO analysis; MicroRNA; Pathway analysis

Indexed keywords

CALCIUM; G PROTEIN COUPLED RECEPTOR; INOSITOL PHOSPHATE; MICRORNA; MICRORNA 137 5P; MICRORNA 203A 3P; MICRORNA 212 3P; MICRORNA 216A 5P; MICRORNA 219 1 3P; MICRORNA 24 1 5P; MICRORNA 323 3P; MICRORNA 34C 5P; MICRORNA 350; MICRORNA 351 5P; MICRORNA 369 5P; MICRORNA 375 3P; MICRORNA 410 3P; MICRORNA 592; MICRORNA 758 3P; MICRORNA 92A 1 5P; MICRORNA 935; MITOGEN ACTIVATED PROTEIN KINASE; NERVE GROWTH FACTOR RECEPTOR; PHOSPHATIDYLINOSITOL; RNA POLYMERASE II; STREPTOZOCIN; TRANSFORMING GROWTH FACTOR BETA; UNCLASSIFIED DRUG;

EID: 84901822422     PISSN: 02713683     EISSN: 14602202     Source Type: Journal    
DOI: 10.3109/02713683.2013.872280     Document Type: Article
Times cited : (34)

References (42)
  • 3
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004;116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 79251581020 scopus 로고    scopus 로고
    • The art of microRNA research
    • van Rooij E. The art of microRNA research. Circ Res 2011; 108:219-234.
    • (2011) Circ Res , vol.108 , pp. 219-234
    • Van Rooij, E.1
  • 6
    • 79957630312 scopus 로고    scopus 로고
    • MicroRNA- 126 inhibits ischemia-induced retinal neovascularization via regulating angiogenic growth factors
    • Bai Y, Bai X, Wang Z, Zhang X, Ruan C, Miao J. MicroRNA- 126 inhibits ischemia-induced retinal neovascularization via regulating angiogenic growth factors. Exp Mol Pathol 2011;91:471-477.
    • (2011) Exp Mol Pathol , vol.91 , pp. 471-477
    • Bai, Y.1    Bai, X.2    Wang, Z.3    Zhang, X.4    Ruan, C.5    Miao, J.6
  • 7
    • 79953225170 scopus 로고    scopus 로고
    • MicroRNA-200b regulates vascular endothelial growth factor-mediated alterations in diabetic retinopathy
    • McArthur K, Feng B, Wu Y, Chen S, Chakrabarti S. MicroRNA-200b regulates vascular endothelial growth factor-mediated alterations in diabetic retinopathy. Diabetes 2011;60:1314-1323.
    • (2011) Diabetes , vol.60 , pp. 1314-1323
    • McArthur, K.1    Feng, B.2    Wu, Y.3    Chen, S.4    Chakrabarti, S.5
  • 10
    • 80052333875 scopus 로고    scopus 로고
    • MicroRNAs in early diabetic retinopathy in streptozotocin-induced diabetic rats
    • Kovacs B, Lumayag S, Cowan C, Xu S. MicroRNAs in early diabetic retinopathy in streptozotocin-induced diabetic rats. Invest Ophthalmol Vis Sci 2011;52:4402-4409.
    • (2011) Invest Ophthalmol Vis Sci , vol.52 , pp. 4402-4409
    • Kovacs, B.1    Lumayag, S.2    Cowan, C.3    Xu, S.4
  • 11
    • 80053027076 scopus 로고    scopus 로고
    • Expression and cellular localization of microRNA-29b and RAX, an activator of the RNAdependent protein kinase (PKR), in the retina of streptozotocin-induced diabetic rats
    • Silva VA, Polesskaya A, Sousa TA, Correa VM, Andre ND, Reis RI, et al. Expression and cellular localization of microRNA-29b and RAX, an activator of the RNAdependent protein kinase (PKR), in the retina of streptozotocin-induced diabetic rats. Mol Vis 2011;17:2228-2240.
    • (2011) Mol Vis , vol.17 , pp. 2228-2240
    • Silva, V.A.1    Polesskaya, A.2    Sousa, T.A.3    Correa, V.M.4    Andre, N.D.5    Reis, R.I.6
  • 12
    • 34547555796 scopus 로고    scopus 로고
    • Global and local architecture of the mammalian microRNA-transcription factor regulatory network
    • Shalgi R, Lieber D, Oren M, Pilpel Y. Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput Biol 2007;3:e131.
    • (2007) PLoS Comput Biol , vol.3
    • Shalgi, R.1    Lieber, D.2    Oren, M.3    Pilpel, Y.4
  • 13
  • 14
    • 33644875286 scopus 로고    scopus 로고
    • The Gene Ontology (GO) project in 2006
    • The Gene Ontology (GO) project in 2006. Nucleic Acids Res 2006;34:D322-D326.
    • (2006) Nucleic Acids Res , vol.34
  • 15
    • 34250173488 scopus 로고    scopus 로고
    • Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
    • Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, et al. Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nat Biotechnol 2007;25:663-668.
    • (2007) Nat Biotechnol , vol.25 , pp. 663-668
    • Dupuy, D.1    Bertin, N.2    Hidalgo, C.A.3    Venkatesan, K.4    Tu, D.5    Lee, D.6
  • 17
    • 33644779844 scopus 로고    scopus 로고
    • WholePathwayScope: A comprehensive pathwaybased analysis tool for high-throughput data
    • Yi M, Horton JD, Cohen JC, Hobbs HH, Stephens RM. WholePathwayScope: a comprehensive pathwaybased analysis tool for high-throughput data. BMC Bioinformatics 2006;7:30.
    • (2006) BMC Bioinformatics , vol.7 , pp. 30
    • Yi, M.1    Horton, J.D.2    Cohen, J.C.3    Hobbs, H.H.4    Stephens, R.M.5
  • 19
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001;25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 20
    • 0348143180 scopus 로고    scopus 로고
    • A random variance model for detection of differential gene expression in small microarray experiments
    • Wright GW, Simon RM. A random variance model for detection of differential gene expression in small microarray experiments. Bioinformatics 2003;19:2448-2455.
    • (2003) Bioinformatics , vol.19 , pp. 2448-2455
    • Wright, G.W.1    Simon, R.M.2
  • 22
    • 37549029793 scopus 로고    scopus 로고
    • The properties of high-dimensional data spaces: Implications for exploring gene and protein expression data
    • Clarke R, Ressom HW, Wang A, Xuan J, Liu MC, Gehan EA, et al. The properties of high-dimensional data spaces: implications for exploring gene and protein expression data. Nat Rev Cancer 2008;8:37-49.
    • (2008) Nat Rev Cancer , vol.8 , pp. 37-49
    • Clarke, R.1    Ressom, H.W.2    Wang, A.3    Xuan, J.4    Liu, M.C.5    Gehan, E.A.6
  • 24
    • 82955161737 scopus 로고    scopus 로고
    • Altered microRNA expression profiles in retinas with diabetic retinopathy
    • Wu JH, Gao Y, Ren AJ, Zhao SH, Zhong M, Peng YJ, et al. Altered microRNA expression profiles in retinas with diabetic retinopathy. Ophthalmic Res 2012;47:195-201.
    • (2012) Ophthalmic Res , vol.47 , pp. 195-201
    • Wu, J.H.1    Gao, Y.2    Ren, A.J.3    Zhao, S.H.4    Zhong, M.5    Peng, Y.J.6
  • 25
    • 84879391556 scopus 로고    scopus 로고
    • Diagnostic microRNA markers to screen for sporadic human colon cancer in stool: I. Proof of principle
    • Ahmed FE, Ahmed NC, Vos PW, Bonnerup C, Atkins JN, Casey M, et al. Diagnostic microRNA markers to screen for sporadic human colon cancer in stool: I. Proof of principle. Cancer Genomics Proteomics 2013;10:93-113.
    • (2013) Cancer Genomics Proteomics , vol.10 , pp. 93-113
    • Ahmed, F.E.1    Ahmed, N.C.2    Vos, P.W.3    Bonnerup, C.4    Atkins, J.N.5    Casey, M.6
  • 27
    • 0141594635 scopus 로고    scopus 로고
    • Apoptotic death of photoreceptors in the streptozotocin-induced diabetic rat retina
    • Park SH, Park JW, Park SJ, Kim KY, Chung JW, Chun MH, et al. Apoptotic death of photoreceptors in the streptozotocin-induced diabetic rat retina. Diabetologia 2003;46: 1260-1268.
    • (2003) Diabetologia , vol.46 , pp. 1260-1268
    • Park, S.H.1    Park, J.W.2    Park, S.J.3    Kim, K.Y.4    Chung, J.W.5    Chun, M.H.6
  • 28
    • 11144357238 scopus 로고    scopus 로고
    • Simvastatin inhibits leukocyte accumulation and vascular permeability in the retinas of rats with streptozotocin-induced diabetes
    • Miyahara S, Kiryu J, Yamashiro K, Miyamoto K, Hirose F, Tamura H, et al. Simvastatin inhibits leukocyte accumulation and vascular permeability in the retinas of rats with streptozotocin-induced diabetes. Am J Pathol 2004;164: 1697-1706.
    • (2004) Am J Pathol , vol.164 , pp. 1697-1706
    • Miyahara, S.1    Kiryu, J.2    Yamashiro, K.3    Miyamoto, K.4    Hirose, F.5    Tamura, H.6
  • 29
    • 84858864291 scopus 로고    scopus 로고
    • In vivo MRI of olfactory ensheathing cell grafts and regenerating axons in transplant mediated repair of the adult rat optic nerve
    • Sandvig I, Thuen M, Hoang L, Olsen O, Sardella TC, Brekken C, et al. In vivo MRI of olfactory ensheathing cell grafts and regenerating axons in transplant mediated repair of the adult rat optic nerve. NMR Biomed 2012;25: 620-631.
    • (2012) NMR Biomed , vol.25 , pp. 620-631
    • Sandvig, I.1    Thuen, M.2    Hoang, L.3    Olsen, O.4    Sardella, T.C.5    Brekken, C.6
  • 30
    • 0032529103 scopus 로고    scopus 로고
    • Neural apoptosis in the retina during experimental and human diabetes. Early onset and effect of insulin
    • Barber AJ, Lieth E, Khin SA, Antonetti DA, Buchanan AG, Gardner TW. Neural apoptosis in the retina during experimental and human diabetes. Early onset and effect of insulin. J Clin Invest 1998;102:783-791.
    • (1998) J Clin Invest , vol.102 , pp. 783-791
    • Barber, A.J.1    Lieth, E.2    Khin, S.A.3    Antonetti, D.A.4    Buchanan, A.G.5    Gardner, T.W.6
  • 31
    • 84874726758 scopus 로고    scopus 로고
    • Inhibition of high glucose-induced VEGF release in retinal ganglion cells by RNA interference targeting G protein-coupled receptor 91
    • Hu J, Wu Q, Li T, Chen Y, Wang S. Inhibition of high glucose-induced VEGF release in retinal ganglion cells by RNA interference targeting G protein-coupled receptor 91. Exp Eye Res 2013;109:31-39.
    • (2013) Exp Eye Res , vol.109 , pp. 31-39
    • Hu, J.1    Wu, Q.2    Li, T.3    Chen, Y.4    Wang, S.5
  • 32
    • 84868506284 scopus 로고    scopus 로고
    • Phospho-site-specific antibody microarray to study the state of protein phosphorylation in the retina
    • Rajala RV. Phospho-site-specific antibody microarray to study the state of protein phosphorylation in the retina. J Proteomics Bioinform 2008;1:242-250.
    • (2008) J Proteomics Bioinform , vol.1 , pp. 242-250
    • Rajala, R.V.1
  • 33
    • 0029331089 scopus 로고
    • Nerve growth factor prevents both neuroretinal programmed cell death and capillary pathology in experimental diabetes
    • Hammes HP, Federoff HJ, Brownlee M. Nerve growth factor prevents both neuroretinal programmed cell death and capillary pathology in experimental diabetes. Mol Med 1995;1:527-534.
    • (1995) Mol Med , vol.1 , pp. 527-534
    • Hammes, H.P.1    Federoff, H.J.2    Brownlee, M.3
  • 34
    • 34547903199 scopus 로고    scopus 로고
    • Proteome map of normal rat retina and comparison with the proteome of diabetic rat retina: New insight in the pathogenesis of diabetic retinopathy
    • Quin G, Len AC, Billson FA, Gillies MC. Proteome map of normal rat retina and comparison with the proteome of diabetic rat retina: new insight in the pathogenesis of diabetic retinopathy. Proteomics 2007;7:2636-2650.
    • (2007) Proteomics , vol.7 , pp. 2636-2650
    • Quin, G.1    Len, A.C.2    Billson, F.A.3    Gillies, M.C.4
  • 35
    • 0036282046 scopus 로고    scopus 로고
    • Higher concentration of transforming growth factor-beta in aqueous humor of glaucomatous eyes and diabetic eyes
    • Ochiai Y, Ochiai H. Higher concentration of transforming growth factor-beta in aqueous humor of glaucomatous eyes and diabetic eyes. Jpn J Ophthalmol 2002;46:249-253.
    • (2002) Jpn J Ophthalmol , vol.46 , pp. 249-253
    • Ochiai, Y.1    Ochiai, H.2
  • 36
    • 79959607880 scopus 로고    scopus 로고
    • Increased expression of TGF-beta1 and Smad 4 on oxygen-induced retinopathy in neonatal mice
    • Yingchuan F, Chuntao L, Hui C, Jianbin H. Increased expression of TGF-beta1 and Smad 4 on oxygen-induced retinopathy in neonatal mice. Adv Exp Med Biol 2010;664: 71-77.
    • (2010) Adv Exp Med Biol , vol.664 , pp. 71-77
    • Yingchuan, F.1    Chuntao, L.2    Hui, C.3    Jianbin, H.4
  • 37
    • 84863574268 scopus 로고    scopus 로고
    • Ephrin-a4 is involved in retinal neovascularization by regulating the VEGF signaling pathway
    • Du W, Yu W, Huang L, Zhao M, Li X. Ephrin-a4 is involved in retinal neovascularization by regulating the VEGF signaling pathway. Invest Ophthalmol Vis Sci 2012;53: 1990-1998.
    • (2012) Invest Ophthalmol Vis Sci , vol.53 , pp. 1990-1998
    • Du, W.1    Yu, W.2    Huang, L.3    Zhao, M.4    Li, X.5
  • 38
    • 0034993799 scopus 로고    scopus 로고
    • Phosphorylation of p38 mitogen-activated protein kinase downstream of baxcaspase- 3 pathway leads to cell death induced by high D-glucose in human endothelial cells
    • Nakagami H, Morishita R, Yamamoto K, Yoshimura SI, Taniyama Y, Aoki M, et al. Phosphorylation of p38 mitogen-activated protein kinase downstream of baxcaspase- 3 pathway leads to cell death induced by high D-glucose in human endothelial cells. Diabetes 2001;50: 1472-1481.
    • (2001) Diabetes , vol.50 , pp. 1472-1481
    • Nakagami, H.1    Morishita, R.2    Yamamoto, K.3    Yoshimura, S.I.4    Taniyama, Y.5    Aoki, M.6
  • 39
    • 84863499969 scopus 로고    scopus 로고
    • P38 MAP kinase functions as a switch in MS-275-induced reactive oxygen species-dependent autophagy and apoptosis in human colon cancer cells
    • Zhan Y, Gong K, Chen C, Wang H, Li W. P38 MAP kinase functions as a switch in MS-275-induced reactive oxygen species-dependent autophagy and apoptosis in human colon cancer cells. Free Radic Biol Med 2012;53:532-543.
    • (2012) Free Radic Biol Med , vol.53 , pp. 532-543
    • Zhan, Y.1    Gong, K.2    Chen, C.3    Wang, H.4    Li, W.5
  • 40
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005;120:15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 41
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
    • Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, Thomson AM, et al. A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell 2006;126:1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.S.4    Tam, W.L.5    Thomson, A.M.6
  • 42
    • 34248682403 scopus 로고    scopus 로고
    • RNAi therapeutics: Principles, prospects and challenges
    • Aagaard L, Rossi JJ. RNAi therapeutics: principles, prospects and challenges. Adv Drug Deliv Rev 2007;59:75-86.
    • (2007) Adv Drug Deliv Rev , vol.59 , pp. 75-86
    • Aagaard, L.1    Rossi, J.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.