Comparison of pulsed-gel electrophoresis and a commercial repetitive-element PCR method for assessment of methicillin-resistant Staphylococcus aureus clustering in different health care facilities

Journal of Clinical Microbiology

Volumn 52, Issue 6, 2014, Pages 2027-2032

  Crnich, Christopher J ^a,b   Duster, Megan ^a   Warrack, Simone ^a   Maki, Dennis ^a   Safdar, Nasia ^a,b  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

^b WILLIAM S MIDDLETON MEMORIAL VETERANS HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; HUMAN; INTERMETHOD COMPARISON; MAJOR CLINICAL STUDY; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; NONHUMAN; NURSING HOME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RELIABILITY; REPETITIVE ELEMENT POLYMERASE CHAIN REACTION; STRAIN DIFFERENCE; TEACHING HOSPITAL; ADOLESCENT; CLASSIFICATION; COHORT ANALYSIS; COMPARATIVE STUDY; CROSS INFECTION; EVALUATION STUDY; FEMALE; GENETICS; GENOTYPE; HEALTH CARE FACILITY; ISOLATION AND PURIFICATION; LONGITUDINAL STUDY; MALE; MICROBIOLOGY; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; PROCEDURES; STAPHYLOCOCCUS INFECTION; YOUNG ADULT;

ADOLESCENT; ADULT; BACTERIAL TYPING TECHNIQUES; COHORT STUDIES; CROSS INFECTION; ELECTROPHORESIS, GEL, PULSED-FIELD; ENVIRONMENTAL MICROBIOLOGY; FEMALE; GENOTYPE; HEALTH FACILITIES; HUMANS; LONGITUDINAL STUDIES; MALE; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; POLYMERASE CHAIN REACTION; STAPHYLOCOCCAL INFECTIONS; YOUNG ADULT;

EID: 84901675882     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.03466-13     Document Type: Article

References (34)

1. Bonomo R. 2000. Multiple antibiotic-resistant bacteria in long-term-care facilities: an emerging problem in the practice of infectious diseases. Clin. Infect. Dis. 31:1414-1422. http://dx.doi.org/10.1086/317489
2. Grundmann H, Aires-de-Sousa M, Boyce J, Tiemersma E. 2006. Emergence and resurgence of meticillin-resistant Staphylococcus aureus as a public-health threat. Lancet 368:874-885. http://dx.doi.org/10.1016/S0140-6736(06)68853-3 (Pubitemid 44308640)
3. Chambers HF, Deleo FR. 2009. Waves of resistance: Staphylococcus aureus in the antibiotic era. Nat. Rev. Microbiol. 7:629-641. http://dx.doi.org/10. 1038/nrmicro2200
4. Goering RV. 2000. The molecular epidemiology of nosocomial infection: past, present and future. Rev. Med. Microbiol. 11:145-152. http://dx.doi.org/10. 1097/00013542-200011030-00004.
5. van Belkum A. 2002. Molecular typing of microorganisms: at the centre of diagnostics, genomics and pathogenesis of infectious diseases? J. Med. Microbiol. 51:7-10. http://jmm.sgmjournals.org/content/51/1/7.full.pdf-html. (Pubitemid 34060126)
6. Singh A, Goering R, Simjee S, Foley S, Zervos M. 2006. Application of molecular techniques to the study of hospital infection. Clin. Microbiol. Rev. 19:512-530. http://dx.doi.org/10.1128/CMR.00025-05 (Pubitemid 44134307)
7. Healy M, Huong J, Bittner T, Lising M, Frye S, Raza S, Schrock R, Manry J, Renwick A, Nieto R, Woods C, Versalovic J, Lupski J. 2005. Microbial DNA typing by automated repetitive-sequence-based PCR. J. Clin. Microbiol. 43:199-207. http://dx.doi.org/10.1128/JCM.43.1.199-207.2005 (Pubitemid 40096301)
8. Shutt C, Pounder J, Page S, Schaecher B, Woods G. 2005. Clinical evaluation of the DiversiLab microbial typing system using repetitivesequence- based PCR for characterization of Staphylococcus aureus strains. J. Clin. Microbiol. 43:1187-1192. http://dx.doi.org/10.1128/JCM.43.3.1187-1192.2005 (Pubitemid 40364936)
9. Ross T, Merz W, Farkosh M, Carroll K. 2005. Comparison of an automated repetitive sequence-based PCR microbial typing system to pulsedfield gel electrophoresis for analysis of outbreaks of methicillin-resistant Staphylococcus aureus. J. Clin. Microbiol. 43:5642-5647. http://dx.doi.org/10. 1128/JCM.43.11.5642-5647.2005 (Pubitemid 41612342)
10. Tenover FC, Gay EA, Frye S, Eells SJ, Healy M, McGowan JE. 2009. Comparison of typing results obtained for methicillin-resistant Staphylococcus aureus isolates with the DiversiLab system and pulsed-field gel electrophoresis. J. Clin. Microbiol. 47:2452-2457. http://dx.doi.org/10.1128/JCM.00476-09
11. Grisold AJ, Zarfel G, Strenger V, Feierl G, Leitner E, Masoud L, Hoenigl M, Raggam RB, Dosch V, Marth E. 2010. Use of automated repetitivesequence-based PCR for rapid laboratory confirmation of nosocomial outbreaks. J. Infect. 60:44-51. http://dx.doi.org/10.1016/j.jinf.2009.10.045
12. Fluit AC, Terlingen AM, Andriessen L, Ikawaty R, van Mansfeld R, Top J, Cohen Stuart JW, Leverstein-van Hall MA, Boel CHE. 2010. Evaluation of the DiversiLab system for the detection of hospital outbreaks of different bacterial species. J. Clin. Microbiol. 48:3979-3989. http://dx.doi.org/10.1128/JCM.01191- 10
13. Te Witt R, Kanhai V, van Leeuwen WB. 2009. Comparison of the DiversiLab system, pulsed-field gel electrophoresis and multilocus sequence typing for the characterization of epidemic reference MRSA strains. J. Microbiol. Methods 77:130-133. http://dx.doi.org/10.1016/j .mimet.2009.01.009
14. Church DL, Chow BL, Lloyd T, Gregson DB. 2011. Comparison of automated repetitive-sequence-based polymerase chain reaction and spa typing versus pulsed-field gel electrophoresis for molecular typing of methicillin-resistant Staphylococcus aureus. Diagn. Microbiol. Infect. Dis. 69: 30-37. http://dx.doi.org/10.1016/j.diagmicrobio.2010.09.010
15. Babouee B, Frei R, Schultheiss E, Widmer AF, Goldenberger D. 2011. Comparison of the DiversiLab repetitive element PCR system with spa typing and pulsed-field gel electrophoresis for clonal characterization of methicillin-resistant Staphylococcus aureus. J. Clin. Microbiol. 49:1549-1555. http://dx.doi.org/10.1128/JCM.02254-10
16. Safdar N, Narans L, Gordon B, Maki D. 2003. Comparison of culture screening methods for detection of nasal carriage of methicillin-resistant Staphylococcus aureus: a prospective study comparing 32 methods. J. Clin. Microbiol. 41:3163-3166. http://dx.doi.org/10.1128/JCM.41.7.3163-3166 .2003 (Pubitemid 36842316)
17. Clinical and Laboratory Standards Institute. 2006. Performance standards for antimicrobial disk susceptibility tests; approved standard-9th ed. CLSI M2-A9. Clinical and Laboratory Standards Institute, Wayne, PA.
18. Centers for Disease Control and Prevention. 2001. Oxacillin-resistant Staphylococcus aureus on PulseNet (OPN): laboratory protocol for molecular typing of S. aureus by pulsed-field gel electrophoresis (PFGE). Centers for Disease Control and Prevention, Atlanta, GA. http://www.cdc.gov/hai/pdfs/ labsettings/ar-mras-pfge-s-aureus.pdf.
19. McDougal LK, Steward CD, Killgore GE, Chaitram JM, McAllister SK, Tenover FC. 2003. Pulsed-field gel electrophoresis typing of oxacillinresistant Staphylococcus aureus isolates from the United States: establishing a national database. J. Clin. Microbiol. 41:5113-5120. http://dx.doi.org/10.1128/JCM.41.11. 5113-5120.2003 (Pubitemid 37429924)
20. Sokal R, Michener C. 1958. A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 38:1409-1438
21. Dice LR. 1945. Measures of the amount of ecological association between species. Ecology 26:297-302. http://dx.doi.org/10.2307/1932409
22. Kullbeck S, Leibler RA. 1951. On information and sufficiency. Ann. Math. Statist. 22:79-86. http://dx.doi.org/10.1214/aoms/1177729694
23. Carri?o JA, Silva-Costa C, Melo-Cristino J, Pinto FR, de Lencastre H, Almeida JS, Ramirez M. 2006. Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes. J. Clin. Microbiol. 44:2524-2532. http://dx.doi.org/10.1128/JCM.02536- 05 (Pubitemid 44092422)
24. Goering RV. 2010. Pulsed field gel electrophoresis: a review of application and interpretation in the molecular epidemiology of infectious disease. Infect. Genet. Evol. 10:866-875. http://dx.doi.org/10.1016/j.meegid. 2010.07.023
25. van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S, Struelens M, European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group on Epidemiological Markers (ESGEM). 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin. Microbiol. Infect. 13(Suppl 3):1-46 (Pubitemid 47316257)
26. Duda RO, Hart PE, Stork DG. 2001. Pattern classification, 2nd ed. John Wiley & Sons, Inc., New York, NY.
27. Simpson EH. 1949. Measurement of species diversity. Nature 163:688. http://dx.doi.org/10.1038/163688a0
28. Grundmann H, Hori S, Tanner G. 2001. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J. Clin. Microbiol. 39:4190-4192. http://dx.doi.org/10.1128/JCM.39.11.4190-4192.2001 (Pubitemid 33029810)
29. Severiano A, Carri?o JA, Robinson DA, Ramirez M, Pinto FR. 2011. Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures. PLoS One 6:e19539. http://dx.doi.org/10.1371/ journal.pone.0019539
30. Hubert L, Arabie P. 1985. Comparing partitions. J. Classif. 2:193-218. http://dx.doi.org/10.1007/BF01908075
31. Pinto FR, Melo-Cristino J, Ramirez M. 2008. A confidence interval for the wallace coefficient of concordance and its application to microbial typing methods. PLoS One 3:e3696. http://dx.doi.org/10.1371/journal.pone.0003696
32. Severiano A, Pinto FR, Ramirez M, Carri?o JA. 2011. Adjusted Wallace coefficient as a measure of congruence between typing methods. J. Clin. Microbiol. 49:3997-4000. http://dx.doi.org/10.1128/JCM.00624-11
33. Clarridge JE, Harrington AT, Roberts MC, Soge OO, Maquelin K. 2013. Impact of strain typing methods on assessment of relationship between paired nares and wound isolates of methicillin-resistant Staphylococcus aureus. J. Clin. Microbiol. 51:224-231. http://dx.doi.org/10.1128/JCM.02423-12
34. Shore AC, Rossney AS, Kinnevey PM, Brennan OM, Creamer E, Sherlock O, Dolan A, Cunney R, Sullivan DJ, Goering RV, Humphreys H, Coleman DC. 2010. Enhanced discrimination of highly clonal ST22-methicillin-resistant Staphylococcus aureus IV isolates achieved by combining spa, dru, and pulsed-field gel electrophoresis typing data. J. Clin. Microbiol. 48:1839-1852. http://dx.doi.org/10.1128/JCM.02155-09.