-
2
-
-
77958554992
-
Bronchioloalveolar carcinoma and the significance of invasion: predicting biologic behavior
-
Schmidt L., Myers J. Bronchioloalveolar carcinoma and the significance of invasion: predicting biologic behavior. Arch Pathol Lab Med 2010, 134:1450-1454.
-
(2010)
Arch Pathol Lab Med
, vol.134
, pp. 1450-1454
-
-
Schmidt, L.1
Myers, J.2
-
3
-
-
79958295551
-
Nucleic acids extraction from laser microdissected FFPE tissue sections
-
Burgemeister R. Nucleic acids extraction from laser microdissected FFPE tissue sections. Methods Mol Biol 2011, 724:117-129.
-
(2011)
Methods Mol Biol
, vol.724
, pp. 117-129
-
-
Burgemeister, R.1
-
4
-
-
79960965892
-
Laser-capture microdissection and transcriptional profiling in archival FFPE tissue in prostate cancer
-
Joseph A., Gnanapragasam V.J. Laser-capture microdissection and transcriptional profiling in archival FFPE tissue in prostate cancer. Methods Mol Biol 2011, 755:291-300.
-
(2011)
Methods Mol Biol
, vol.755
, pp. 291-300
-
-
Joseph, A.1
Gnanapragasam, V.J.2
-
5
-
-
50249102857
-
RNA expression analysis from formalin fixed paraffin embedded tissues
-
Farragher S.M., Tanney A., Kennedy R.D., Paul Harkin D. RNA expression analysis from formalin fixed paraffin embedded tissues. Histochem Cell Biol 2008, 130:435-445.
-
(2008)
Histochem Cell Biol
, vol.130
, pp. 435-445
-
-
Farragher, S.M.1
Tanney, A.2
Kennedy, R.D.3
Paul Harkin, D.4
-
6
-
-
74049134880
-
Unlocking the molecular archive: the emerging use of formalin-fixed paraffin-embedded tissue for biomarker research in urological cancer
-
Gnanapragasam V.J. Unlocking the molecular archive: the emerging use of formalin-fixed paraffin-embedded tissue for biomarker research in urological cancer. BJU Int 2010, 105:274-278.
-
(2010)
BJU Int
, vol.105
, pp. 274-278
-
-
Gnanapragasam, V.J.1
-
7
-
-
79958289412
-
MicroRNA isolation from formalin-fixed, paraffin-embedded tissues
-
Liu A., Xu X. MicroRNA isolation from formalin-fixed, paraffin-embedded tissues. Methods Mol Biol 2011, 724:259-267.
-
(2011)
Methods Mol Biol
, vol.724
, pp. 259-267
-
-
Liu, A.1
Xu, X.2
-
8
-
-
79955919705
-
Evidence for qualified quantitative mRNA analysis in formalin-fixed and paraffin-embedded colorectal carcinoma cells and tissue
-
Lu X., van der Straaten T., Tiller M., Li X. Evidence for qualified quantitative mRNA analysis in formalin-fixed and paraffin-embedded colorectal carcinoma cells and tissue. J Clin Lab Anal 2011, 25:166-173.
-
(2011)
J Clin Lab Anal
, vol.25
, pp. 166-173
-
-
Lu, X.1
van der Straaten, T.2
Tiller, M.3
Li, X.4
-
9
-
-
84859934922
-
Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses
-
Ludyga N., Grunwald B., Azimzadeh O., Englert S., Hofler H., Tapio S., Aubele M. Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses. Virchows Arch 2012, 460:131-140.
-
(2012)
Virchows Arch
, vol.460
, pp. 131-140
-
-
Ludyga, N.1
Grunwald, B.2
Azimzadeh, O.3
Englert, S.4
Hofler, H.5
Tapio, S.6
Aubele, M.7
-
10
-
-
84859927970
-
Utilizing mRNA extracted from small, archival formalin-fixed paraffin-embedded prostate samples for translational research: assessment of the effect of increasing sample age and storage temperature
-
Stewart G.D., Baird J., Rae F., Nanda J., Riddick A.C., Harrison D.J. Utilizing mRNA extracted from small, archival formalin-fixed paraffin-embedded prostate samples for translational research: assessment of the effect of increasing sample age and storage temperature. Int Urol Nephrol 2011, 43:961-967.
-
(2011)
Int Urol Nephrol
, vol.43
, pp. 961-967
-
-
Stewart, G.D.1
Baird, J.2
Rae, F.3
Nanda, J.4
Riddick, A.C.5
Harrison, D.J.6
-
11
-
-
84858993897
-
Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues
-
Waldron L., Simpson P., Parmigiani G., Huttenhower C. Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues. BMC Cancer 2012, 12:124.
-
(2012)
BMC Cancer
, vol.12
, pp. 124
-
-
Waldron, L.1
Simpson, P.2
Parmigiani, G.3
Huttenhower, C.4
-
12
-
-
84863763618
-
Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue
-
Sinicropi D., Qu K., Collin F., Crager M., Liu M.L., Pelham R.J., Pho M., Rossi A.D., Jeong J., Scott A., Ambannavar R., Zheng C., Mena R., Esteban J., Stephans J., Morlan J., Baker J. Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue. PLoS ONE 2012, 7:e40092.
-
(2012)
PLoS ONE
, vol.7
-
-
Sinicropi, D.1
Qu, K.2
Collin, F.3
Crager, M.4
Liu, M.L.5
Pelham, R.J.6
Pho, M.7
Rossi, A.D.8
Jeong, J.9
Scott, A.10
Ambannavar, R.11
Zheng, C.12
Mena, R.13
Esteban, J.14
Stephans, J.15
Morlan, J.16
Baker, J.17
-
13
-
-
80052745094
-
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
-
Grant G.R., Farkas M.H., Pizarro A.D., Lahens N.F., Schug J., Brunk B.P., Stoeckert C.J., Hogenesch J.B., Pierce E.A. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinformatics 2011, 27:2518-2528.
-
(2011)
Bioinformatics
, vol.27
, pp. 2518-2528
-
-
Grant, G.R.1
Farkas, M.H.2
Pizarro, A.D.3
Lahens, N.F.4
Schug, J.5
Brunk, B.P.6
Stoeckert, C.J.7
Hogenesch, J.B.8
Pierce, E.A.9
-
14
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
Wu T.D., Watanabe C.K. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21:1859-1875.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
15
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
Wu T.D., Nacu S. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 2010, 26:873-881.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
16
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011, 25:1915-1927.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
17
-
-
84861743958
-
RNA-SeQC. RNA-seq metrics for quality control and process optimization
-
DeLuca D.S., Levin J.Z., Sivachenko A., Fennell T., Nazaire M.D., Williams C., Reich M., Winckler W., Getz G. RNA-SeQC. RNA-seq metrics for quality control and process optimization. Bioinformatics 2012, 28:1530-1532.
-
(2012)
Bioinformatics
, vol.28
, pp. 1530-1532
-
-
DeLuca, D.S.1
Levin, J.Z.2
Sivachenko, A.3
Fennell, T.4
Nazaire, M.D.5
Williams, C.6
Reich, M.7
Winckler, W.8
Getz, G.9
-
18
-
-
48449104617
-
GOEAST: a web-based software toolkit for gene ontology enrichment analysis
-
Zheng Q., Wang X.J. GOEAST: a web-based software toolkit for gene ontology enrichment analysis. Nucleic Acids Res 2008, 36:W358-W363.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Zheng, Q.1
Wang, X.J.2
-
19
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Humana Press, Totowa, NJ, S.A. Krawetz, S. Misener (Eds.)
-
Rozen S., Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics methods and protocols: methods in molecular biology 2000, 365-386. Humana Press, Totowa, NJ. S.A. Krawetz, S. Misener (Eds.).
-
(2000)
Bioinformatics methods and protocols: methods in molecular biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.J.2
-
20
-
-
84859320008
-
PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update
-
Wang X., Spandidos A., Wang H., Seed B. PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update. Nucleic Acids Res 2012, 40:D1144-D1149.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Wang, X.1
Spandidos, A.2
Wang, H.3
Seed, B.4
-
21
-
-
79953901498
-
Expression analysis of angiogenesis-related genes in Bulgarian patients with early-stage non-small cell lung cancer
-
Metodieva S.N., Nikolova D.N., Cherneva R.V., Dimova I.I., Petrov D.B., Toncheva D.I. Expression analysis of angiogenesis-related genes in Bulgarian patients with early-stage non-small cell lung cancer. Tumori 2011, 97:86-94.
-
(2011)
Tumori
, vol.97
, pp. 86-94
-
-
Metodieva, S.N.1
Nikolova, D.N.2
Cherneva, R.V.3
Dimova, I.I.4
Petrov, D.B.5
Toncheva, D.I.6
-
22
-
-
77949655800
-
Identification of novel PTEN-binding partners: PTEN interaction with fatty acid binding protein FABP4
-
Gorbenko O., Panayotou G., Zhyvoloup A., Volkova D., Gout I., Filonenko V. Identification of novel PTEN-binding partners: PTEN interaction with fatty acid binding protein FABP4. Mol Cell Biochem 2010, 337:299-305.
-
(2010)
Mol Cell Biochem
, vol.337
, pp. 299-305
-
-
Gorbenko, O.1
Panayotou, G.2
Zhyvoloup, A.3
Volkova, D.4
Gout, I.5
Filonenko, V.6
-
23
-
-
0034780032
-
Gene expression patterns of paired bronchioloalveolar carcinoma and benign lung tissue
-
Goodwin L.O., Mason J.M., Hajdu S.I. Gene expression patterns of paired bronchioloalveolar carcinoma and benign lung tissue. Ann Clin Lab Sci 2001, 31:369-375.
-
(2001)
Ann Clin Lab Sci
, vol.31
, pp. 369-375
-
-
Goodwin, L.O.1
Mason, J.M.2
Hajdu, S.I.3
-
24
-
-
84876077448
-
Expression of CLDN1 and CLDN10 in lung adenocarcinoma in situ and invasive lepidic predominant adenocarcinoma
-
Zhang Z., Wang A., Sun B., Zhan Z., Chen K., Wang C. Expression of CLDN1 and CLDN10 in lung adenocarcinoma in situ and invasive lepidic predominant adenocarcinoma. J Cardiothorac Surg 2013, 8:95.
-
(2013)
J Cardiothorac Surg
, vol.8
, pp. 95
-
-
Zhang, Z.1
Wang, A.2
Sun, B.3
Zhan, Z.4
Chen, K.5
Wang, C.6
-
25
-
-
84874271270
-
GEO: archive for functional genomics data sets - update
-
Soboleva A.N.C.B.I.
-
Barrett T., Wilhite S.E., Ledoux P., Evangelista C., Kim I.F., Tomashevsky M., Marshall K.A., Phillippy K.H., Sherman P.M., Holko M., Yefanov A., Lee H., Zhang N., Robertson C.L., Serova N., Davis S., Soboleva A.N.C.B.I. GEO: archive for functional genomics data sets - update. Nucleic Acids Res 2013, 41:D991-D995.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
Yefanov, A.11
Lee, H.12
Zhang, N.13
Robertson, C.L.14
Serova, N.15
Davis, S.16
-
26
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., Huarte M., Zuk O., Carey B.W., Cassady J.P., Cabili M.N., Jaenisch R., Mikkelsen T.S., Jacks T., Hacohen N., Bernstein B.E., Kellis M., Regev A., Rinn J.L., Lander E.S. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
27
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil A.M., Guttman M., Huarte M., Garber M., Raj A., Rivea Morales D., Thomas K., Presser A., Bernstein B.E., van Oudenaarden A., Regev A., Lander E.S., Rinn J.L. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009, 106:11667-11672.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
van Oudenaarden, A.10
Regev, A.11
Lander, E.S.12
Rinn, J.L.13
-
28
-
-
84901625367
-
Global gene expression differentiating pure bronchioloalveolar carcinoma from adenocarcinoma with bronchioloalveolar carcinoma features
-
Zhang W.C., Zhang Z.F., You J., Wang C.L. Global gene expression differentiating pure bronchioloalveolar carcinoma from adenocarcinoma with bronchioloalveolar carcinoma features. Eur J Cardiothorac Surg 2012.
-
(2012)
Eur J Cardiothorac Surg
-
-
Zhang, W.C.1
Zhang, Z.F.2
You, J.3
Wang, C.L.4
-
29
-
-
0036081355
-
Gene expression omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R., Domrachev M., Lash A.E. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
|