메뉴 건너뛰기




Volumn 85, Issue 1, 2014, Pages 31-39

Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens

Author keywords

Adenocarcinoma in situ of the lung; Formalin fixed paraffin embedded (FFPE); Gene expression; Invasive lung adenocarcinoma; Laser capture microdissection (LCM); LincRNA; RNA Seq

Indexed keywords

FORMALDEHYDE; LONG UNTRANSLATED RNA; MESSENGER RNA; PARAFFIN; TRANSCRIPTOME;

EID: 84901585322     PISSN: 01695002     EISSN: 18728332     Source Type: Journal    
DOI: 10.1016/j.lungcan.2014.03.020     Document Type: Article
Times cited : (47)

References (29)
  • 2
    • 77958554992 scopus 로고    scopus 로고
    • Bronchioloalveolar carcinoma and the significance of invasion: predicting biologic behavior
    • Schmidt L., Myers J. Bronchioloalveolar carcinoma and the significance of invasion: predicting biologic behavior. Arch Pathol Lab Med 2010, 134:1450-1454.
    • (2010) Arch Pathol Lab Med , vol.134 , pp. 1450-1454
    • Schmidt, L.1    Myers, J.2
  • 3
    • 79958295551 scopus 로고    scopus 로고
    • Nucleic acids extraction from laser microdissected FFPE tissue sections
    • Burgemeister R. Nucleic acids extraction from laser microdissected FFPE tissue sections. Methods Mol Biol 2011, 724:117-129.
    • (2011) Methods Mol Biol , vol.724 , pp. 117-129
    • Burgemeister, R.1
  • 4
    • 79960965892 scopus 로고    scopus 로고
    • Laser-capture microdissection and transcriptional profiling in archival FFPE tissue in prostate cancer
    • Joseph A., Gnanapragasam V.J. Laser-capture microdissection and transcriptional profiling in archival FFPE tissue in prostate cancer. Methods Mol Biol 2011, 755:291-300.
    • (2011) Methods Mol Biol , vol.755 , pp. 291-300
    • Joseph, A.1    Gnanapragasam, V.J.2
  • 6
    • 74049134880 scopus 로고    scopus 로고
    • Unlocking the molecular archive: the emerging use of formalin-fixed paraffin-embedded tissue for biomarker research in urological cancer
    • Gnanapragasam V.J. Unlocking the molecular archive: the emerging use of formalin-fixed paraffin-embedded tissue for biomarker research in urological cancer. BJU Int 2010, 105:274-278.
    • (2010) BJU Int , vol.105 , pp. 274-278
    • Gnanapragasam, V.J.1
  • 7
    • 79958289412 scopus 로고    scopus 로고
    • MicroRNA isolation from formalin-fixed, paraffin-embedded tissues
    • Liu A., Xu X. MicroRNA isolation from formalin-fixed, paraffin-embedded tissues. Methods Mol Biol 2011, 724:259-267.
    • (2011) Methods Mol Biol , vol.724 , pp. 259-267
    • Liu, A.1    Xu, X.2
  • 8
    • 79955919705 scopus 로고    scopus 로고
    • Evidence for qualified quantitative mRNA analysis in formalin-fixed and paraffin-embedded colorectal carcinoma cells and tissue
    • Lu X., van der Straaten T., Tiller M., Li X. Evidence for qualified quantitative mRNA analysis in formalin-fixed and paraffin-embedded colorectal carcinoma cells and tissue. J Clin Lab Anal 2011, 25:166-173.
    • (2011) J Clin Lab Anal , vol.25 , pp. 166-173
    • Lu, X.1    van der Straaten, T.2    Tiller, M.3    Li, X.4
  • 10
    • 84859927970 scopus 로고    scopus 로고
    • Utilizing mRNA extracted from small, archival formalin-fixed paraffin-embedded prostate samples for translational research: assessment of the effect of increasing sample age and storage temperature
    • Stewart G.D., Baird J., Rae F., Nanda J., Riddick A.C., Harrison D.J. Utilizing mRNA extracted from small, archival formalin-fixed paraffin-embedded prostate samples for translational research: assessment of the effect of increasing sample age and storage temperature. Int Urol Nephrol 2011, 43:961-967.
    • (2011) Int Urol Nephrol , vol.43 , pp. 961-967
    • Stewart, G.D.1    Baird, J.2    Rae, F.3    Nanda, J.4    Riddick, A.C.5    Harrison, D.J.6
  • 11
    • 84858993897 scopus 로고    scopus 로고
    • Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues
    • Waldron L., Simpson P., Parmigiani G., Huttenhower C. Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues. BMC Cancer 2012, 12:124.
    • (2012) BMC Cancer , vol.12 , pp. 124
    • Waldron, L.1    Simpson, P.2    Parmigiani, G.3    Huttenhower, C.4
  • 14
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: a genomic mapping and alignment program for mRNA and EST sequences
    • Wu T.D., Watanabe C.K. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21:1859-1875.
    • (2005) Bioinformatics , vol.21 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2
  • 15
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu T.D., Nacu S. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 2010, 26:873-881.
    • (2010) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2
  • 16
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011, 25:1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 18
    • 48449104617 scopus 로고    scopus 로고
    • GOEAST: a web-based software toolkit for gene ontology enrichment analysis
    • Zheng Q., Wang X.J. GOEAST: a web-based software toolkit for gene ontology enrichment analysis. Nucleic Acids Res 2008, 36:W358-W363.
    • (2008) Nucleic Acids Res , vol.36
    • Zheng, Q.1    Wang, X.J.2
  • 19
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Humana Press, Totowa, NJ, S.A. Krawetz, S. Misener (Eds.)
    • Rozen S., Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics methods and protocols: methods in molecular biology 2000, 365-386. Humana Press, Totowa, NJ. S.A. Krawetz, S. Misener (Eds.).
    • (2000) Bioinformatics methods and protocols: methods in molecular biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 20
    • 84859320008 scopus 로고    scopus 로고
    • PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update
    • Wang X., Spandidos A., Wang H., Seed B. PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update. Nucleic Acids Res 2012, 40:D1144-D1149.
    • (2012) Nucleic Acids Res , vol.40
    • Wang, X.1    Spandidos, A.2    Wang, H.3    Seed, B.4
  • 21
    • 79953901498 scopus 로고    scopus 로고
    • Expression analysis of angiogenesis-related genes in Bulgarian patients with early-stage non-small cell lung cancer
    • Metodieva S.N., Nikolova D.N., Cherneva R.V., Dimova I.I., Petrov D.B., Toncheva D.I. Expression analysis of angiogenesis-related genes in Bulgarian patients with early-stage non-small cell lung cancer. Tumori 2011, 97:86-94.
    • (2011) Tumori , vol.97 , pp. 86-94
    • Metodieva, S.N.1    Nikolova, D.N.2    Cherneva, R.V.3    Dimova, I.I.4    Petrov, D.B.5    Toncheva, D.I.6
  • 22
    • 77949655800 scopus 로고    scopus 로고
    • Identification of novel PTEN-binding partners: PTEN interaction with fatty acid binding protein FABP4
    • Gorbenko O., Panayotou G., Zhyvoloup A., Volkova D., Gout I., Filonenko V. Identification of novel PTEN-binding partners: PTEN interaction with fatty acid binding protein FABP4. Mol Cell Biochem 2010, 337:299-305.
    • (2010) Mol Cell Biochem , vol.337 , pp. 299-305
    • Gorbenko, O.1    Panayotou, G.2    Zhyvoloup, A.3    Volkova, D.4    Gout, I.5    Filonenko, V.6
  • 23
    • 0034780032 scopus 로고    scopus 로고
    • Gene expression patterns of paired bronchioloalveolar carcinoma and benign lung tissue
    • Goodwin L.O., Mason J.M., Hajdu S.I. Gene expression patterns of paired bronchioloalveolar carcinoma and benign lung tissue. Ann Clin Lab Sci 2001, 31:369-375.
    • (2001) Ann Clin Lab Sci , vol.31 , pp. 369-375
    • Goodwin, L.O.1    Mason, J.M.2    Hajdu, S.I.3
  • 24
    • 84876077448 scopus 로고    scopus 로고
    • Expression of CLDN1 and CLDN10 in lung adenocarcinoma in situ and invasive lepidic predominant adenocarcinoma
    • Zhang Z., Wang A., Sun B., Zhan Z., Chen K., Wang C. Expression of CLDN1 and CLDN10 in lung adenocarcinoma in situ and invasive lepidic predominant adenocarcinoma. J Cardiothorac Surg 2013, 8:95.
    • (2013) J Cardiothorac Surg , vol.8 , pp. 95
    • Zhang, Z.1    Wang, A.2    Sun, B.3    Zhan, Z.4    Chen, K.5    Wang, C.6
  • 28
    • 84901625367 scopus 로고    scopus 로고
    • Global gene expression differentiating pure bronchioloalveolar carcinoma from adenocarcinoma with bronchioloalveolar carcinoma features
    • Zhang W.C., Zhang Z.F., You J., Wang C.L. Global gene expression differentiating pure bronchioloalveolar carcinoma from adenocarcinoma with bronchioloalveolar carcinoma features. Eur J Cardiothorac Surg 2012.
    • (2012) Eur J Cardiothorac Surg
    • Zhang, W.C.1    Zhang, Z.F.2    You, J.3    Wang, C.L.4
  • 29
    • 0036081355 scopus 로고    scopus 로고
    • Gene expression omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R., Domrachev M., Lash A.E. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.