-
1
-
-
3543042493
-
Periodic gene expression program of the fission yeast cell cycle
-
10.1038/ng1377, 15195092
-
Rustici G, Mata J, Kivinen K, Lió P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bähler J. Periodic gene expression program of the fission yeast cell cycle. Nat Genet 2004, 36(8):809-817. 10.1038/ng1377, 15195092.
-
(2004)
Nat Genet
, vol.36
, Issue.8
, pp. 809-817
-
-
Rustici, G.1
Mata, J.2
Kivinen, K.3
Lió, P.4
Penkett, C.J.5
Burns, G.6
Hayles, J.7
Brazma, A.8
Nurse, P.9
Bähler, J.10
-
2
-
-
0034598746
-
Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling
-
10.1038/35000501, 10676951
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, et al. Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling. Nature 2000, 403(6769):503-511. 10.1038/35000501, 10676951.
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson, J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
more..
-
3
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
10.1126/science.286.5439.531, 10521349
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999, 286(5439):531-537. 10.1126/science.286.5439.531, 10521349.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
4
-
-
27544449357
-
Fusing microarray experiments with multivariate regression
-
Gilks WR, Tom BDM, Brazma A. Fusing microarray experiments with multivariate regression. Bioinformatics 2005, 21(suppl 2):137-143.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL 2
, pp. 137-143
-
-
Gilks, W.R.1
Tom, B.D.M.2
Brazma, A.3
-
5
-
-
4944232237
-
Combining multiple microarray studies and modeling interstudy variation
-
Choi JK, Yu U, Kim S, Yoo OJ. Combining multiple microarray studies and modeling interstudy variation. Bioinformatics 2003, 19(suppl 1):84-90.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL 1
, pp. 84-90
-
-
Choi, J.K.1
Yu, U.2
Kim, S.3
Yoo, O.J.4
-
6
-
-
20844437991
-
Functional annotation and network reconstruction through cross-platform integration of microarray data
-
10.1038/nbt1058, 15654329
-
Zhou XJ, Kao MCJ, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH. Functional annotation and network reconstruction through cross-platform integration of microarray data. Nat Biotechnol 2005, 23(2):238-243. 10.1038/nbt1058, 15654329.
-
(2005)
Nat Biotechnol
, vol.23
, Issue.2
, pp. 238-243
-
-
Zhou, X.J.1
Kao, M.C.J.2
Huang, H.3
Wong, A.4
Nunez-Iglesias, J.5
Primig, M.6
Aparicio, O.M.7
Finch, C.E.8
Morgan, T.E.9
Wong, W.H.10
-
7
-
-
41149104381
-
Cross-study validation and combined analysis of gene expression microarray data
-
Garrett-Mayer E, Parmigiani G, Zhong X, Cope L, Gabrielson E. Cross-study validation and combined analysis of gene expression microarray data. Biostatistics 2008, 9(2):333-354.
-
(2008)
Biostatistics
, vol.9
, Issue.2
, pp. 333-354
-
-
Garrett-Mayer, E.1
Parmigiani, G.2
Zhong, X.3
Cope, L.4
Gabrielson, E.5
-
8
-
-
34248160315
-
Integrating microarray data by consensus clustering
-
Filkov V, Skiena S. Integrating microarray data by consensus clustering. Int J Artif Intell Tools 2004, 13(4):863-880.
-
(2004)
Int J Artif Intell Tools
, vol.13
, Issue.4
, pp. 863-880
-
-
Filkov, V.1
Skiena, S.2
-
9
-
-
84949523513
-
Collective, hierarchical clustering from distributed, heterogeneous data
-
Johnson E, Kargupta H. Collective, hierarchical clustering from distributed, heterogeneous data. Large-Scale Parallel KDD Syst 1999, 1759:221-244.
-
(1999)
Large-Scale Parallel KDD Syst
, vol.1759
, pp. 221-244
-
-
Johnson, E.1
Kargupta, H.2
-
10
-
-
30144442247
-
Clustering ensembles: models of consensus and weak partitions
-
Topchy A, Jain AK, Punch W. Clustering ensembles: models of consensus and weak partitions. IEEE Trans Pattern Anal Mach Intell 2005, 27(12):1866-1881.
-
(2005)
IEEE Trans Pattern Anal Mach Intell
, vol.27
, Issue.12
, pp. 1866-1881
-
-
Topchy, A.1
Jain, A.K.2
Punch, W.3
-
11
-
-
0041965980
-
Cluster ensembles-a knowledge reuse framework for combining multiple partitions
-
Strehl A, Ghosh J. Cluster ensembles-a knowledge reuse framework for combining multiple partitions. J Mach Learn Res 2003, 3:583-617.
-
(2003)
J Mach Learn Res
, vol.3
, pp. 583-617
-
-
Strehl, A.1
Ghosh, J.2
-
12
-
-
0002629270
-
Maximum likelihood from incomplete data via the em algorithm
-
Dempster AP, Laird NM, Rubin DB. Maximum likelihood from incomplete data via the em algorithm. J Roy Stat Soc B 1977, 39(1):1-38.
-
(1977)
J Roy Stat Soc B
, vol.39
, Issue.1
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
13
-
-
80052694838
-
Clustering of multiple microarray experiments using information integration
-
Kostadinova E, Boeva V, Lavesson N. Clustering of multiple microarray experiments using information integration. Inf Technol Bio-and Med Inform 2011, 6865:123-137.
-
(2011)
Inf Technol Bio-and Med Inform
, vol.6865
, pp. 123-137
-
-
Kostadinova, E.1
Boeva, V.2
Lavesson, N.3
-
14
-
-
84856645720
-
Clustering of multiple dna microarrays through combination of particle swarm intelligence and k-means
-
Pittsburgh, USA: ACTA Press
-
Boeva V, Hristoskova A, Tsiporkova E. Clustering of multiple dna microarrays through combination of particle swarm intelligence and k-means. 6th International Conference on Computational Intelligence and Bioinformatics: Modelling, Identification, and Simulation 2011, 32-38. Pittsburgh, USA: ACTA Press.
-
(2011)
6th International Conference on Computational Intelligence and Bioinformatics: Modelling, Identification, and Simulation
, pp. 32-38
-
-
Boeva, V.1
Hristoskova, A.2
Tsiporkova, E.3
-
15
-
-
84865585901
-
An integrative clustering approach combining particle swarm optimization and formal concept analysis
-
Vienna, Austria: Springer Berlin Heidelberg
-
Hristoskova A, Boeva V, Tsiporkova E. An integrative clustering approach combining particle swarm optimization and formal concept analysis. Proceedings of Information Technology in Bio-and Medical Informatics 2012, 84-98. Vienna, Austria: Springer Berlin Heidelberg.
-
(2012)
Proceedings of Information Technology in Bio-and Medical Informatics
, pp. 84-98
-
-
Hristoskova, A.1
Boeva, V.2
Tsiporkova, E.3
-
16
-
-
0001457509
-
Some methods for classification and analysis of multivariate observations
-
Berkeley, Calif.: University of California Press
-
MacQueen J. Some methods for classification and analysis of multivariate observations. Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability, vol. 1: 21 June - 18 July, 1965 and 27 December, 1965 - 7 January, 1966; California, USA 1967, 281-297. Berkeley, Calif.: University of California Press.
-
(1967)
Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability, vol. 1: 21 June - 18 July, 1965 and 27 December, 1965 - 7 January, 1966; California, USA
, pp. 281-297
-
-
MacQueen, J.1
-
17
-
-
84985857701
-
Fitting groups in data: an introduction to cluster analysis
-
Kaufman L, Rousseeuw PJ. Fitting groups in data: an introduction to cluster analysis. J Am Stat Ass 1991, 86(415):830-832.
-
(1991)
J Am Stat Ass
, vol.86
, Issue.415
, pp. 830-832
-
-
Kaufman, L.1
Rousseeuw, P.J.2
-
21
-
-
18644363741
-
Image classification using particle swarm optimization
-
Singapore: [Nanyang Technological University, School of Electrical & Electronic Engineering]
-
Omran M, Salman A, Engelbrecht A. Image classification using particle swarm optimization. Proceedings of the 4th Asia-Pacific Conference on Simulated Evolution and Learning, vol. 1: 18-22 November 2002; Orchid Country Club, Singapore 2002, 370-374. Singapore: [Nanyang Technological University, School of Electrical & Electronic Engineering].
-
(2002)
Proceedings of the 4th Asia-Pacific Conference on Simulated Evolution and Learning, vol. 1: 18-22 November 2002; Orchid Country Club, Singapore
, pp. 370-374
-
-
Omran, M.1
Salman, A.2
Engelbrecht, A.3
-
23
-
-
84947231090
-
Gene clustering using self-organizing maps and particle swarm optimization
-
Nice, France: IEEE
-
Xiao X, Dow ER, Eberhart R, Miled ZB, Oppelt RJ. Gene clustering using self-organizing maps and particle swarm optimization. 17th International Symposium on Parallel and Distributed Processing 2003, 10-21. Nice, France: IEEE.
-
(2003)
17th International Symposium on Parallel and Distributed Processing
, pp. 10-21
-
-
Xiao, X.1
Dow, E.R.2
Eberhart, R.3
Miled, Z.B.4
Oppelt, R.J.5
-
24
-
-
84862791682
-
Integration of particle swarm optimization and genetic algorithm for dynamic clustering
-
Kuo RJ, Syu YJ, Chen Z-Y, Tien FC. Integration of particle swarm optimization and genetic algorithm for dynamic clustering. Inform Sci 2012, 195:124-140.
-
(2012)
Inform Sci
, vol.195
, pp. 124-140
-
-
Kuo, R.J.1
Syu, Y.J.2
Chen, Z.-Y.3
Tien, F.C.4
-
25
-
-
58149395119
-
-
Berlin, Heidelberg: Springer
-
Ganter B, Stumme G, Wille R. Formal Concept Analysis: Foundations and Applications, vol. 3626 2005, Berlin, Heidelberg: Springer.
-
(2005)
Formal Concept Analysis: Foundations and Applications, vol. 3626
-
-
Ganter, B.1
Stumme, G.2
Wille, R.3
-
27
-
-
33645319789
-
Constraint-based concept mining and its application to microarray data analysis
-
Besson J, Robardet C, Boulicaut JF, Rome S. Constraint-based concept mining and its application to microarray data analysis. Intell Data Anal 2005, 9(1):59-82.
-
(2005)
Intell Data Anal
, vol.9
, Issue.1
, pp. 59-82
-
-
Besson, J.1
Robardet, C.2
Boulicaut, J.F.3
Rome, S.4
-
28
-
-
44049098618
-
Using formal concept analysis for microarray data comparison
-
10.1142/S021972000800328X, 18324746
-
Choi V, Huang Y, Lam V, Potter D, Laubenbacher R, Duca K. Using formal concept analysis for microarray data comparison. J Bioinform Comput Biol 2008, 6(1):65. 10.1142/S021972000800328X, 18324746.
-
(2008)
J Bioinform Comput Biol
, vol.6
, Issue.1
, pp. 65
-
-
Choi, V.1
Huang, Y.2
Lam, V.3
Potter, D.4
Laubenbacher, R.5
Duca, K.6
-
29
-
-
44049088054
-
A combinatorial approach to scientific exploration of gene expression data: an integrative method using formal concept analysis for the comparative analysis of microarray data
-
Potter DP. A combinatorial approach to scientific exploration of gene expression data: an integrative method using formal concept analysis for the comparative analysis of microarray data. PhD thesis. Citeseer; 2005
-
(2005)
PhD thesis. Citeseer;
-
-
Potter, D.P.1
-
31
-
-
79952191194
-
Mining gene expression data with pattern structures in formal concept analysis
-
Kaytoue M, Kuznetsov S, Napoli A, Duplessis S. Mining gene expression data with pattern structures in formal concept analysis. Inf Sci 2011, 181(10):1989-2001.
-
(2011)
Inf Sci
, vol.181
, Issue.10
, pp. 1989-2001
-
-
Kaytoue, M.1
Kuznetsov, S.2
Napoli, A.3
Duplessis, S.4
-
34
-
-
35348851943
-
Two-pass imputation algorithm for missing value estimation in gene expression time series
-
10.1142/S0219720007003053, 17933008
-
Tsiporkova E, Boeva V. Two-pass imputation algorithm for missing value estimation in gene expression time series. J Bioinform Comput Biol 2007, 5(5):1005-1022. 10.1142/S0219720007003053, 17933008.
-
(2007)
J Bioinform Comput Biol
, vol.5
, Issue.5
, pp. 1005-1022
-
-
Tsiporkova, E.1
Boeva, V.2
-
35
-
-
77957734757
-
A multi-purpose time series data standardization method
-
Boeva V, Tsiporkova E. A multi-purpose time series data standardization method. Intell Syst Theory Pract 2010, 299:445-460.
-
(2010)
Intell Syst Theory Pract
, vol.299
, pp. 445-460
-
-
Boeva, V.1
Tsiporkova, E.2
-
36
-
-
25144456056
-
Computational cluster validation in post-genomic data analysis
-
10.1093/bioinformatics/bti517, 15914541
-
Handl J, Knowles J, Kell DB. Computational cluster validation in post-genomic data analysis. Bioinformatics 2005, 21(15):3201-3212. 10.1093/bioinformatics/bti517, 15914541.
-
(2005)
Bioinformatics
, vol.21
, Issue.15
, pp. 3201-3212
-
-
Handl, J.1
Knowles, J.2
Kell, D.B.3
-
37
-
-
0023453329
-
Silhouettes: a graphical aid to the interpretation and validation of cluster analysis
-
Rousseeuw PJ. Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. J Comput Appl Math 1987, 20:53-65.
-
(1987)
J Comput Appl Math
, vol.20
, pp. 53-65
-
-
Rousseeuw, P.J.1
-
38
-
-
24044440971
-
Bingo: a cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
10.1093/bioinformatics/bti551, 15972284
-
Maere S, Heymans K, Kuiper M. Bingo: a cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005, 21(16):3448-3449. 10.1093/bioinformatics/bti551, 15972284.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
39
-
-
11244260106
-
Weka: data mining software in Java
-
Weka: data mining software in Java. [http://www.cs.waikato.ac.nz/ml/weka/].
-
-
-
-
40
-
-
84901486928
-
Galicia: Galois lattice interactive constructor
-
Galicia: Galois lattice interactive constructor. [http://www.iro.umontreal.ca/galicia/features.html].
-
-
-
|