-
1
-
-
0003899196
-
Prebiotic Chemistry from Simple Amphiphiles to Model Protocells. Topics in Current Chemistry
-
Springer: Berlin, Germany
-
Walde, P., Ed. Prebiotic Chemistry from Simple Amphiphiles to Model Protocells. Topics in Current Chemistry; Springer: Berlin, Germany, 2005.
-
(2005)
-
-
Walde, P.1
-
3
-
-
31344455122
-
Approaches to semi-synthetic minimal cells a review
-
Luisi, P.L.; Ferri, F.; Stano, P. Approaches to semi-synthetic minimal cells a review. Naturwissenschaften 2006, 93, 1-13.
-
(2006)
Naturwissenschaften
, vol.93
, pp. 1-13
-
-
Luisi, P.L.1
Ferri, F.2
Stano, P.3
-
4
-
-
84900132033
-
The Minimal Cell: The Biophysics of Cell Compartment and the Origin of Cell Functionality
-
Springer: Berlin, Germany
-
Luisi, P.L.; Stano P. The Minimal Cell: The Biophysics of Cell Compartment and the Origin of Cell Functionality; Springer: Berlin, Germany, 2011.
-
(2011)
-
-
Luisi, P.L.1
Stano, P.2
-
5
-
-
79952775158
-
Development of an artificial cell, from self-organization to computation and self-reproduction
-
USA
-
Noireaux, V.; Maeda, Y.T.; Libchaber, A. Development of an artificial cell, from self-organization to computation and self-reproduction. Proc. Natl. Acad. Sci. USA 2011, 108, 3473-3480.
-
(2011)
Proc. Natl. Acad. Sci
, vol.108
, pp. 3473-3480
-
-
Noireaux, V.1
Maeda, Y.T.2
Libchaber, A.3
-
6
-
-
35148900129
-
Synthetic protocell biology from reproduction to computation
-
Solé, R.V.; Munteanu, A.; Rodriguez-Caso, C.; Macía, J. Synthetic protocell biology from reproduction to computation. Phil. Trans. R. Soc. B 2007, 362, 1727-1739.
-
(2007)
Phil. Trans. R. Soc. B
, vol.362
, pp. 1727-1739
-
-
Solé, R.V.1
Munteanu, A.2
Rodriguez-Caso, C.3
Macía, J.4
-
7
-
-
34548860810
-
Autopoiesis: The organization of living systems, its characterization and a model
-
Varela, F.J.; Maturana, H.R.; Uribe, R. Autopoiesis: The organization of living systems, its characterization and a model. Biosystems 1974, 5, 187-196.
-
(1974)
Biosystems
, vol.5
, pp. 187-196
-
-
Varela, F.J.1
Maturana, H.R.2
Uribe, R.3
-
8
-
-
81855192773
-
Compartmentalized reactions as a case of soft-matter biotechnology: Synthesis of proteins and nucleic acids inside lipid vesicles
-
Stano, P.; Carrara, P.; Kuruma, Y.; Souza, T.; Luisi, P.L. Compartmentalized reactions as a case of soft-matter biotechnology: Synthesis of proteins and nucleic acids inside lipid vesicles. J. Mat. Chem. 2011, 21, 18887-18902.
-
(2011)
J. Mat. Chem
, vol.21
, pp. 18887-18902
-
-
Stano, P.1
Carrara, P.2
Kuruma, Y.3
Souza, T.4
Luisi, P.L.5
-
9
-
-
85001419479
-
Self-replicating reverse micelles and chemical autopoiesis
-
Bachmann, P.A.; Walde, P.; Luisi, P.L.; Lang, J. Self-replicating reverse micelles and chemical autopoiesis, J. Am. Chem. Soc. 1990, 112, 8200-8201.
-
(1990)
J. Am. Chem. Soc
, vol.112
, pp. 8200-8201
-
-
Bachmann, P.A.1
Walde, P.2
Luisi, P.L.3
Lang, J.4
-
10
-
-
11644287002
-
Autocatalytic self-replicating micelles as models for prebiotic structures
-
Bachmann, P.A.; Luisi, P.L.; Lang, J. Autocatalytic self-replicating micelles as models for prebiotic structures. Nature 1992, 357, 57-59.
-
(1992)
Nature
, vol.357
, pp. 57-59
-
-
Bachmann, P.A.1
Luisi, P.L.2
Lang, J.3
-
11
-
-
0000606391
-
Autopoietic self-reproduction of fatty-acid vesicles
-
Walde, P.; Wick, R.; Fresta, M.; Mangone, A.; Luisi, P.L. Autopoietic self-reproduction of fatty-acid vesicles. J. Am.Chem. Soc. 1994, 116, 11649-11654.
-
(1994)
J. Am.Chem. Soc
, vol.116
, pp. 11649-11654
-
-
Walde, P.1
Wick, R.2
Fresta, M.3
Mangone, A.4
Luisi, P.L.5
-
12
-
-
0035825160
-
A chemical model of homeostasis
-
Zepik, H.H.; Blöchliger, E.; Luisi, P.L. A chemical model of homeostasis. Angew. Chem. Int. Ed. Engl. 2001, 40, 199-202.
-
(2001)
Angew. Chem. Int. Ed. Engl
, vol.40
, pp. 199-202
-
-
Zepik, H.H.1
Blöchliger, E.2
Luisi, P.L.3
-
13
-
-
84873306630
-
Protocell
-
In, Gargaud, M., Amils, R., Quintanilla, J.C., Cleaves, H.J., II, Irvine, W.M., Pinti, D.L., Viso, M., Eds.; Springer: Heidelberg, Germany
-
Ruiz-Mirazo, K.; Protocell. In Encyclopedia of Astrobiology; Gargaud, M., Amils, R., Quintanilla, J.C., Cleaves, H.J., II, Irvine, W.M., Pinti, D.L., Viso, M., Eds.; Springer: Heidelberg, Germany, 2011; Volume 3, pp. 1353-1354.
-
(2011)
Encyclopedia of Astrobiology
, vol.3
, pp. 1353-1354
-
-
Ruiz-Mirazo, K.1
-
14
-
-
84901428445
-
Lipid Protocells
-
In, Roberts G.C.K., Ed.; Springer: Berlin, Germany
-
Albertsen, A.N.; Monnard, P.A. Lipid Protocells. In Encyclopedia of Biophysics; Roberts G.C.K., Ed.; Springer: Berlin, Germany, 2013; pp. 1280-1286.
-
(2013)
Encyclopedia of Biophysics
, pp. 1280-1286
-
-
Albertsen, A.N.1
Monnard, P.A.2
-
15
-
-
56949106006
-
Protocells, Bridging Nonliving and Living Matter
-
MIT Press: Cambridge, MA, USA
-
Rasmussen, S.; Bedau, M.A.; Chen, L.; Deamer, D.; Krakauer, D.C.; Packard, N.H.; Stadler, P.F., Eds. Protocells, Bridging Nonliving and Living Matter; MIT Press: Cambridge, MA, USA, 2009.
-
-
-
Rasmussen, S.1
Bedau, M.A.2
Chen, L.3
Deamer, D.4
Krakauer, D.C.5
Packard, N.H.6
Stadler, P.F.7
-
17
-
-
0042705213
-
The size-templating matrix effect in vesicle formation I: A microscopic model and analysis
-
Bolton, C.D.; Wattis, J.A.D. The size-templating matrix effect in vesicle formation I: A microscopic model and analysis. J. Phys. Chem. B 2003, 107, 7126-7134.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 7126-7134
-
-
Bolton, C.D.1
Wattis, J.A.D.2
-
18
-
-
0347695852
-
The size-templating matrix effect in vesicle formation II: A macroscopic models and analysis
-
Bolton, C.D.; Wattis, J.A.D. The size-templating matrix effect in vesicle formation II: A macroscopic models and analysis. J. Phys. Chem. B 2003, 107, 14306-14318.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 14306-14318
-
-
Bolton, C.D.1
Wattis, J.A.D.2
-
19
-
-
11144281301
-
A relationship between membrane properties forms the basis of a selectivity mechanism for vesicle self-reproduction
-
Bozic, B.; Svetina, S. A relationship between membrane properties forms the basis of a selectivity mechanism for vesicle self-reproduction. Eur. Biophys. J. 2004, 33, 565-571.
-
(2004)
Eur. Biophys. J.
, vol.33
, pp. 565-571
-
-
Bozic, B.1
Svetina, S.2
-
20
-
-
57349165734
-
Vesicle self-reproduction: The involvement of membrane hydraulic and solute permeabilities
-
Bozic, B.; Svetina, S. Vesicle self-reproduction: The involvement of membrane hydraulic and solute permeabilities. Eur. Phys. J. E 2007, 24, 79-90.
-
(2007)
Eur. Phys. J. E
, vol.24
, pp. 79-90
-
-
Bozic, B.1
Svetina, S.2
-
21
-
-
57349092502
-
Thermodynamics of vesicle growth and instability
-
Fanelli, D.; McKane, A. Thermodynamics of vesicle growth and instability. Phys. Rev. E 2008, 78, 051406.
-
(2008)
Phys. Rev. E
, vol.78
, pp. 051406
-
-
Fanelli, D.1
McKane, A.2
-
22
-
-
33751215216
-
Whole-cell modeling framework in which biochemical dynamics impact aspects of cellular geometry
-
Surovtsev, I.V.; Morgan, J.J.; Lindahl, P.A. Whole-cell modeling framework in which biochemical dynamics impact aspects of cellular geometry. J. Theor. Biol. 2007, 244, 154-166.
-
(2007)
J. Theor. Biol
, vol.244
, pp. 154-166
-
-
Surovtsev, I.V.1
Morgan, J.J.2
Lindahl, P.A.3
-
23
-
-
69249203796
-
Mathematical modeling of a minimal protocell with coordinated growth and division
-
Surovtsev, I.V., Zhang, Z.; Lindahl, P.A.; Morgan, J.J. Mathematical modeling of a minimal protocell with coordinated growth and division. J. Theor. Biol. 2009, 260, 422-429.
-
(2009)
J. Theor. Biol
, vol.260
, pp. 422-429
-
-
Surovtsev, I.V.1
Zhang, Z.2
Lindahl, P.A.3
Morgan, J.J.4
-
24
-
-
35148861119
-
Synthetic Turing protocells: self-reproducing vesicles through symmetry-breaking instabilities
-
Macia, J.; Solé, R.V. Synthetic Turing protocells: self-reproducing vesicles through symmetry-breaking instabilities. Philos. Trans. R. Soc. B 2007, 362, 1821-1829.
-
(2007)
Philos. Trans. R. Soc. B
, vol.362
, pp. 1821-1829
-
-
Macia, J.1
Solé, R.V.2
-
25
-
-
33847658822
-
Protocell self-reproduction in a spatially explicit metabolism-vesicle system
-
Macia, J.; Solé, R.V. Protocell self-reproduction in a spatially explicit metabolism-vesicle system. J. Theor. Biol. 2007, 245, 400-410.
-
(2007)
J. Theor. Biol
, vol.245
, pp. 400-410
-
-
Macia, J.1
Solé, R.V.2
-
26
-
-
78349255859
-
ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments
-
Mavelli, F.; Ruiz-Mirazo, K. ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments. Phys. Biol. 2011, 7, 036002.
-
(2011)
Phys. Biol
, vol.7
, pp. 036002
-
-
Mavelli, F.1
Ruiz-Mirazo, K.2
-
27
-
-
33748921584
-
Stochastic simulations of homogeneous chemically reacting systems
-
Mavelli, F.; Piotto, S. Stochastic simulations of homogeneous chemically reacting systems. J. Mol. Struct 2006, 771, 55-64.
-
(2006)
J. Mol. Struct
, vol.771
, pp. 55-64
-
-
Mavelli, F.1
Piotto, S.2
-
28
-
-
35148857162
-
Stochastic simulations of minimal self-reproducing cellular systems
-
Mavelli, F.; Ruiz-Mirazo, K. Stochastic simulations of minimal self-reproducing cellular systems. Phil. Trans. R. Soc. B 2007, 362, 1789-802.
-
(2007)
Phil. Trans. R. Soc. B
, vol.362
, pp. 1789-1802
-
-
Mavelli, F.1
Ruiz-Mirazo, K.2
-
29
-
-
36248934288
-
Stochastic simulations of fatty-acid proto-cell models
-
In, Bezrukov, S.M., Ed.; SPIE: Washington, DC, USA
-
Mavelli, F.; Ruiz-Mirazo, K. Stochastic simulations of fatty-acid proto-cell models. In Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems; Bezrukov, S.M., Ed.; SPIE: Washington, DC, USA, 2007; Volume 6602, pp. 1B1-1B10.
-
(2007)
Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems
, vol.6602
-
-
Mavelli, F.1
Ruiz-Mirazo, K.2
-
30
-
-
33746898670
-
Insights into the self-reproduction of oleate vesicles
-
Stano, P.; Wehrli, E.; Luisi, P.L. Insights into the self-reproduction of oleate vesicles. J. Phys Condens. Matter 2006, 18, 2231-2238.
-
(2006)
J. Phys Condens. Matter
, vol.18
, pp. 2231-2238
-
-
Stano, P.1
Wehrli, E.2
Luisi, P.L.3
-
31
-
-
84873289358
-
Theoretical conditions for the stationary reproduction of model protocells
-
Mavelli, F.; Ruiz-Mirazo, K. Theoretical conditions for the stationary reproduction of model protocells. Int. Biol. 2013, 5, 324-341.
-
(2013)
Int. Biol
, vol.5
, pp. 324-341
-
-
Mavelli, F.1
Ruiz-Mirazo, K.2
-
32
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie, D.T. Stochastic simulation of chemical kinetics. Annu. Rev. Phys. Chem. 2007, 58, 35-55.
-
(2007)
Annu. Rev. Phys. Chem
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
33
-
-
84864932428
-
Stochastic simulations of minimal cells: the Ribocell model
-
Mavelli, F. Stochastic simulations of minimal cells: the Ribocell model. BMC Bioinformat. 2012, 13, S10.
-
(2012)
BMC Bioinformat
, vol.13
, pp. 10
-
-
Mavelli, F.1
-
34
-
-
37549070328
-
On the way towards 'basic autonomous agents' stochastic simulations of minimal lipid-peptide cells
-
Ruiz-Mirazo, K.; Mavelli, F. On the way towards 'basic autonomous agents' stochastic simulations of minimal lipid-peptide cells. BioSystems 2008, 91, 374-387.
-
(2008)
BioSystems
, vol.91
, pp. 374-387
-
-
Ruiz-Mirazo, K.1
Mavelli, F.2
-
35
-
-
77949843031
-
Kinetic models for autopoietic chemical systems role of fluctuations in homeostatic regime
-
Mavelli, F.; Stano P. Kinetic models for autopoietic chemical systems role of fluctuations in homeostatic regime. Phys. Biol. 2010, 7, 016010.
-
(2010)
Phys. Biol
, vol.7
, pp. 016010
-
-
Mavelli, F.1
Stano, P.2
-
36
-
-
0035905809
-
Synthesizing life
-
Szostak, J.W.; Bartel, D.P.; Luisi, P.L. Synthesizing life. Nature 2001, 409, 387-390.
-
(2001)
Nature
, vol.409
, pp. 387-390
-
-
Szostak, J.W.1
Bartel, D.P.2
Luisi, P.L.3
-
37
-
-
0037817397
-
A Novel System of Self-Reproducing Giant Vesicles
-
Takakura, K.; Toyota, T.; Sugawara, T. A Novel System of Self-Reproducing Giant Vesicles. J. Am. Chem. Soc. 2003, 125, 8134-8140.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 8134-8140
-
-
Takakura, K.1
Toyota, T.2
Sugawara, T.3
-
38
-
-
36448945478
-
Thermodynamic and kinetic characterization of duplex formation between 2'-O, 4'-C-Methylene-modified oligoribonucleotides, DNA and RNA
-
Christensen, U. Thermodynamic and kinetic characterization of duplex formation between 2'-O, 4'-C-Methylene-modified oligoribonucleotides, DNA and RNA. Biosci. Rep. 2007, 27, 327-333.
-
(2007)
Biosci. Rep
, vol.27
, pp. 327-333
-
-
Christensen, U.1
-
39
-
-
0037081803
-
Kinetic study of various binding modes between human DNA polymerase and different DNA substrates by surface-plasmon-resonance biosensor
-
Tsoi, P.Y.; Yang, M. Kinetic study of various binding modes between human DNA polymerase and different DNA substrates by surface-plasmon-resonance biosensor. Biochem. J. 2002, 361, 317-325.
-
(2002)
Biochem. J
, vol.361
, pp. 317-325
-
-
Tsoi, P.Y.1
Yang, M.2
-
41
-
-
84901459475
-
Stochastic Simulations of Non-enzymatic Template-Directed RNA Synthesis Inside Model Protocells
-
Internal Technical Report; Chemistry Department, University of Bari: Bari, Italy
-
De Frenza, A. Stochastic Simulations of Non-enzymatic Template-Directed RNA Synthesis Inside Model Protocells. Internal Technical Report; Chemistry Department, University of Bari: Bari, Italy, 2009.
-
-
-
De Frenza, A.1
-
42
-
-
46449105488
-
Template-directed synthesis of a genetic polymer in a model protocell
-
122-U10
-
Mansy, S.S.; Schrum, J.P.; Krishnamurthy, M.; Tobé, S.; Treco, D.A.; Szostak, J.W. Template-directed synthesis of a genetic polymer in a model protocell. Nature 2008, 454, 122-U10.
-
(2008)
Nature
, vol.454
-
-
Mansy, S.S.1
Schrum, J.P.2
Krishnamurthy, M.3
Tobé, S.4
Treco, D.A.5
Szostak, J.W.6
-
43
-
-
17844393875
-
Semipermeable lipid bilayers exhibit diastereoselectivity favoring ribose
-
USA
-
Sacerdote M.G.; Szostak, J.W. Semipermeable lipid bilayers exhibit diastereoselectivity favoring ribose. Proc. Natl. Acad. Sci. USA 2005, 102, 6004-6008.
-
(2005)
Proc. Natl. Acad. Sci
, vol.102
, pp. 6004-6008
-
-
Sacerdote, M.G.1
Szostak, J.W.2
-
44
-
-
77954915311
-
Could the Ribocell be a Feasible Proto-cell Model?
-
Mavelli, F.; Della Gatta, P.; Cassidei, G.; Luisi, P.L. Could the Ribocell be a Feasible Proto-cell Model? Orig. Life. Evol. Biosph. 2010, 40, 459-464.
-
(2010)
Orig. Life. Evol. Biosph
, vol.40
, pp. 459-464
-
-
Mavelli, F.1
Della Gatta, P.2
Cassidei, G.3
Luisi, P.L.4
-
45
-
-
84864932653
-
Theoretical Approaches to Ribocell Modeling
-
In, Luisi, P.L., Stano, P., Eds.; Springer: Dordrecht, Germany
-
Mavelli, F. Theoretical Approaches to Ribocell Modeling. In Minimal Cell; Luisi, P.L., Stano, P., Eds.; Springer: Dordrecht, Germany, 2011; pp. 255-273.
-
(2011)
Minimal Cell
, pp. 255-273
-
-
Mavelli, F.1
-
46
-
-
44149117720
-
The origin and evolution of the ribosome
-
Smith, T.F.; Lee, J.C.; Gutell R.R.; Hartman, H. The origin and evolution of the ribosome. Biol. Direct. 2008, 3, 16-24.
-
(2008)
Biol. Direct
, vol.3
, pp. 16-24
-
-
Smith, T.F.1
Lee, J.C.2
Gutell, R.R.3
Hartman, H.4
-
47
-
-
68949156176
-
The Dimeric Proto-Ribosome: Structural Details and Possible Implications on the Origin of Life
-
Agmon, I. The Dimeric Proto-Ribosome: Structural Details and Possible Implications on the Origin of Life. Int. J. Mol. Sci. 2009, 10, 2921-2934.
-
(2009)
Int. J. Mol. Sci
, vol.10
, pp. 2921-2934
-
-
Agmon, I.1
-
48
-
-
59249084001
-
A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells
-
Kuruma, Y.; Stano, P.; Ueda, T.; Luisi, P.L. A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells. Biochim. Biophys. Acta 2009, 1788, 567-574.
-
(2009)
Biochim. Biophys. Acta
, vol.1788
, pp. 567-574
-
-
Kuruma, Y.1
Stano, P.2
Ueda, T.3
Luisi, P.L.4
-
49
-
-
0141703286
-
Engineering asymmetric vesicles
-
USA
-
Pautot, S.; Frisken, B.J.; Weitz, D.A. Engineering asymmetric vesicles. Proc. Natl. Acad. Sci. USA. 2003, 100, 10718-10721.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 10718-10721
-
-
Pautot, S.1
Frisken, B.J.2
Weitz, D.A.3
-
50
-
-
84867438840
-
Synthesizing artificial cells from giant unilamellar vesicles: State-of the art in the development of microfluidic technology
-
Matosevic, S. Synthesizing artificial cells from giant unilamellar vesicles: State-of the art in the development of microfluidic technology. Bioessays 2012, 34, 992-1001.
-
(2012)
Bioessays
, vol.34
, pp. 992-1001
-
-
Matosevic, S.1
-
51
-
-
65549091378
-
The minimal size of liposome-based model cells brings about a remarkably enhanced entrapment and protein synthesis
-
Souza, T.; Stano, P.; Luisi, P.L. The minimal size of liposome-based model cells brings about a remarkably enhanced entrapment and protein synthesis. ChemBioChem 2009, 10, 1056-1063.
-
(2009)
ChemBioChem
, vol.10
, pp. 1056-1063
-
-
Souza, T.1
Stano, P.2
Luisi, P.L.3
-
52
-
-
77957197223
-
Spontaneous protein crowding in liposomes: A new vista for the origin of cellular metabolism
-
Luisi, P.L.; Allegretti, M.; Souza, T.; Steineger, F.; Fahr, A.; Stano, P. Spontaneous protein crowding in liposomes: A new vista for the origin of cellular metabolism. ChemBioChem 2010, 11, 1989-1992.
-
(2010)
ChemBioChem
, vol.11
, pp. 1989-1992
-
-
Luisi, P.L.1
Allegretti, M.2
Souza, T.3
Steineger, F.4
Fahr, A.5
Stano, P.6
-
53
-
-
84883247862
-
Structure and enzymatic properties of molecular dendronized polymer-enzyme conjugates and their entrapment inside giant vesicles
-
Grotzky, A.; Altamura, E.; Adamcik, J.; Carrara, P.; Stano, P.; Mavelli, F.; Nauser, T.; Mezzenga, R.; Schlüter, A.D.; Walde, P. Structure and enzymatic properties of molecular dendronized polymer-enzyme conjugates and their entrapment inside giant vesicles. Langmuir 2013, 29, 10831-10840.
-
(2013)
Langmuir
, vol.29
, pp. 10831-10840
-
-
Grotzky, A.1
Altamura, E.2
Adamcik, J.3
Carrara, P.4
Stano, P.5
Mavelli, F.6
Nauser, T.7
Mezzenga, R.8
Schlüter, A.D.9
Walde, P.10
-
54
-
-
84887196015
-
Quasi-cellular systems: Stochastic simulation analysis at nanoscale range
-
Calviello, L.; Stano, P.; Mavelli, F.; Luisi, P.L.; Marangoni R. Quasi-cellular systems: Stochastic simulation analysis at nanoscale range. BMC Bioinformat. 2013, 14, S7.
-
(2013)
BMC Bioinformat
, vol.14
-
-
Calviello, L.1
Stano, P.2
Mavelli, F.3
Luisi, P.L.4
Marangoni, R.5
|