-
1
-
-
80053651587
-
-
Database issue
-
Benson, D.A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. and Sayers, E.W. (2013) GenBank. Nucleic Acids Res., 41(Database issue), D36-D42
-
(2013)
GenBank Nucleic Acids Res
, vol.41
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
2
-
-
84874271270
-
Ncbi geo: Archive for functional genomics data sets-update
-
Database issue
-
Barrett, T., Wilhite, S.E., Ledoux, P., Evangelista, C., Kim, I.F., Tomashevsky, M., Marshall, K.A., Phillippy, K.H., Sherman, P.M. and Holko, M. (2013) NCBI GEO: Archive for functional genomics data sets-update. Nucleic Acids Res., 41(Database issue), D991-D995
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
-
3
-
-
80655132169
-
Clustermaker: A multi-Algorithm clustering plugin for cytoscape
-
Morris, J.H., Apeltsin, L., Newman, A.M., Baumbach, J., Wittkop, T., Su, G., Bader, G.D. and Ferrin, T.E. (2011) clusterMaker: A multi-Algorithm clustering plugin for Cytoscape. BMC Bioinformatics, 12, 436
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 436
-
-
Morris, J.H.1
Apeltsin, L.2
Newman, A.M.3
Baumbach, J.4
Wittkop, T.5
Su, G.6
Bader, G.D.7
Ferrin, T.E.8
-
4
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
Tanay, A., Sharan, R. and Shamir, R. (2002) Discovering statistically significant biclusters in gene expression data. Bioinformatics, 18(Suppl. 1), S136-S144. (Pubitemid 41185647
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
5
-
-
75649124958
-
BiGGEsTS: Integrated environment for biclustering analysis of time series gene expression data
-
Gonçalves, J.P., Madeira, S.C. and Oliveira, A.L. (2009) BiGGEsTS: Integrated environment for biclustering analysis of time series gene expression data. BMC Res. Notes, 2, 124
-
(2009)
BMC Res. Notes
, vol.2
, pp. 124
-
-
Gonçalves, J.P.1
Madeira, S.C.2
Oliveira, A.L.3
-
6
-
-
67650059674
-
IMS2an integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath
-
Baumbach, J., Bunkowski, A., Lange, S., Oberwahrenbrock, T., Kleinbölting, N., Rahmann, S. and Baumbach, J.I. (2007) IMS2an integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. J. Integr. Bioinformatics, 4
-
(2007)
J. Integr. Bioinformatics
, vol.4
-
-
Baumbach, J.1
Bunkowski, A.2
Lange, S.3
Oberwahrenbrock, T.4
Kleinbölting, N.5
Rahmann, S.6
Baumbach, J.I.7
-
9
-
-
38749125176
-
Biclustering in data mining
-
Busygin, S., Prokopyev, O. and Pardalos, P.M. (2008) Biclustering in data mining. Comput. Oper. Res., 35, 2964-2987
-
(2008)
Comput. Oper. Res
, vol.35
, pp. 2964-2987
-
-
Busygin, S.1
Prokopyev, O.2
Pardalos, P.M.3
-
10
-
-
84976486812
-
Recent advances of data biclustering with application in computational neuroscience
-
Springer
-
Fan, N., Boyko, N. and Pardalos, P.M. (2010) Recent advances of data biclustering with application in computational neuroscience. In: Computational Neuroscience. Springer, pp. 85-112
-
(2010)
Computational Neuroscience
, pp. 85-112
-
-
Fan, N.1
Boyko, N.2
Pardalos, P.M.3
-
11
-
-
33646894725
-
Bicat: A biclustering analysis toolbox
-
DOI 10.1093/bioinformatics/btl099
-
Barkow, S., Bleuler, S., Prelíc, A., Zimmermann, P. and Zitzler, E. (2006) BicAT: A biclustering analysis toolbox. Bioinformatics, 22, 1282-1283. (Pubitemid 43779026
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1282-1283
-
-
Barkow, S.1
Bleuler, S.2
Prelic, A.3
Zimmermann, P.4
Zitzler, E.5
-
12
-
-
34548735304
-
BiVisu: Software tool for bicluster detection and visualization
-
Cheng, K-O., Law, N-F., Siu, W-C. and Lau, T. (2007) BiVisu: Software tool for bicluster detection and visualization. Bioinformatics, 23, 2342-2344
-
(2007)
Bioinformatics
, vol.23
, pp. 2342-2344
-
-
Cheng, K.-O.1
Law, N.-F.2
Siu, W.-C.3
Lau, T.4
-
13
-
-
84867684047
-
Integrated simultaneous analysis of different biomedical data types with exact weighted bi-cluster editing
-
Sun, P., Guo, J. and Baumbach, J. (2012) Integrated simultaneous analysis of different biomedical data types with exact weighted bi-cluster editing. J. Integr. Bioinformatics, 9, 197
-
(2012)
J. Integr. Bioinformatics
, vol.9
, pp. 197
-
-
Sun, P.1
Guo, J.2
Baumbach, J.3
-
14
-
-
78951492723
-
Biclustering of adverse drug events in the FDA's spontaneous reporting system
-
Harpaz, R., Perez, H., Chase, H.S., Rabadan, R., Hripcsak, G. and Friedman, C. (2010) Biclustering of adverse drug events in the FDA's spontaneous reporting system. Clin. Pharmacol. Ther., 89, 243-250
-
(2010)
Clin. Pharmacol. Ther
, vol.89
, pp. 243-250
-
-
Harpaz, R.1
Perez, H.2
Chase, H.S.3
Rabadan, R.4
Hripcsak, G.5
Friedman, C.6
-
15
-
-
9944260282
-
Improved biclustering of microarray data demonstrated through systematic performance tests
-
Turner, H., Bailey, T. and Krzanowski, W. (2005) Improved biclustering of microarray data demonstrated through systematic performance tests. Comput. Stat. Data Anal., 48, 235-254
-
(2005)
Comput. Stat. Data Anal
, vol.48
, pp. 235-254
-
-
Turner, H.1
Bailey, T.2
Krzanowski, W.3
-
16
-
-
33646137384
-
A systematic comparison and evaluation of biclustering methods for gene expression data
-
Prelíc, A., Bleuler, S., Zimmermann, P., Wille, A., Bühlmann, P., Gruissem, W., Hennig, L., Thiele, L. and Zitzler, E. (2006) A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics, 22, 1122-1129
-
(2006)
Bioinformatics
, vol.22
, pp. 1122-1129
-
-
Prelíc, A.1
Bleuler, S.2
Zimmermann, P.3
Wille, A.4
Bühlmann, P.5
Gruissem, W.6
Hennig, L.7
Thiele, L.8
Zitzler, E.9
-
17
-
-
84878513816
-
A comparative analysis of biclustering algorithms for gene expression data
-
Eren, K., Deveci, M., Kü çüktunç, O. and Ç atalyü rek, Ü .V. (2013) A comparative analysis of biclustering algorithms for gene expression data. Brief. Bioinform., 14, 279-292
-
(2013)
Brief. Bioinform
, vol.14
, pp. 279-292
-
-
Eren, K.1
Deveci, M.2
Küçüktunç, O.3
Çatalyürek, U.V.4
-
18
-
-
38149122077
-
Efficient parameterized preprocessing for cluster editing
-
Springer-Verlag Berlin Heidelberg
-
Fellows, M., Langston, M., Rosamond, F. and Shaw, P. (2007) Efficient parameterized preprocessing for cluster editing. In:Fundamentals of Computation Theory. Springer-Verlag, Berlin, Heidelberg, pp. 312-321
-
(2007)
Fundamentals of Computation Theory
, pp. 312-321
-
-
Fellows, M.1
Langston, M.2
Rosamond, F.3
Shaw, P.4
-
19
-
-
59049089242
-
A more effective linear kernelization for cluster editing
-
Guo, J. (2009) A more effective linear kernelization for cluster editing. Theor. Comput. Sci., 410, 718-726
-
(2009)
Theor. Comput. Sci
, vol.410
, pp. 718-726
-
-
Guo, J.1
-
20
-
-
70350568210
-
Going weighted: Parameterized algorithms for cluster editing
-
Böcker, S., Briesemeister, S., Bui, Q.B.A. and Truß, A. (2009) Going weighted: Parameterized algorithms for cluster editing. Theor. Comput. Sci., 410, 5467-5480
-
(2009)
Theor. Comput. Sci
, vol.410
, pp. 5467-5480
-
-
Böcker, S.1
Briesemeister, S.2
Bui, Q.B.A.3
Truß, A.4
-
21
-
-
77952983494
-
Partitioning biological data with transitivity clustering
-
Wittkop, T., Emig, D., Lange, S., Rahmann, S., Albrecht, M., Morris, J.H., Böcker, S., Stoye, J. and Baumbach, J. (2010) Partitioning biological data with transitivity clustering. Nat. Methods, 7, 419-420
-
(2010)
Nat. Methods
, vol.7
, pp. 419-420
-
-
Wittkop, T.1
Emig, D.2
Lange, S.3
Rahmann, S.4
Albrecht, M.5
Morris, J.H.6
Böcker, S.7
Stoye, J.8
Baumbach, J.9
-
22
-
-
79952433272
-
Comprehensive cluster analysis with transitivity clustering
-
Wittkop, T., Emig, D., Truss, A., Albrecht, M., Böcker, S. and Baumbach, J. (2011) Comprehensive cluster analysis with transitivity clustering. Nat. Protoc., 6, 285-295
-
(2011)
Nat. Protoc
, vol.6
, pp. 285-295
-
-
Wittkop, T.1
Emig, D.2
Truss, A.3
Albrecht, M.4
Böcker, S.5
Baumbach, J.6
-
23
-
-
84880423246
-
Cluster editing
-
Logic, Algorithms, Applications Springer-Verlag, Berlin, Heidelberg
-
Böcker, S. and Baumbach, J. (2013) Cluster editing. In: The Nature of Computation. Logic, Algorithms, Applications. Springer-Verlag, Berlin, Heidelberg, pp. 33-44
-
(2013)
The Nature of Computation
, pp. 33-44
-
-
Böcker, S.1
Baumbach, J.2
-
25
-
-
70349339310
-
Improved algorithms for bicluster editing
-
Springer-Verlag Berlin Heidelberg
-
Guo, J., Hüffner, F., Komusiewicz, C. and Zhang, Y. (2008) Improved algorithms for bicluster editing. In: Theory and Applications of Models of Computation. Springer-Verlag, Berlin, Heidelberg, pp. 445-456
-
(2008)
Theory and Applications of Models of Computation
, pp. 445-456
-
-
Guo, J.1
Hüffner, F.2
Komusiewicz, C.3
Zhang, Y.4
-
26
-
-
0036012349
-
Plaid models for gene expression data
-
Lazzeroni, L. and Owen, A. et al. (2002) Plaid models for gene expression data. Stat. Sinica, 12, 61-86
-
(2002)
Stat. Sinica
, vol.12
, pp. 61-86
-
-
Lazzeroni, L.1
Owen, A.2
-
27
-
-
0026257928
-
Graph drawing by force-directed placement
-
Fruchterman, T.M. and Reingold, E.M. (1991) Graph drawing by force-directed placement. Softw: Pract. Exp., 21, 1129-1164
-
(1991)
Softw: Pract. Exp
, vol.21
, pp. 1129-1164
-
-
Fruchterman, T.M.1
Reingold, E.M.2
-
28
-
-
84863682471
-
Extension and robustness of transitivity clustering for protein-protein interaction network analysis
-
Wittkop, T., Rahmann, S., Röttger, R., Böcker, S. and Baumbach, J. (2011) Extension and robustness of transitivity clustering for protein-protein interaction network analysis. Internet Math., 7, 255-273
-
(2011)
Internet Math
, vol.7
, pp. 255-273
-
-
Wittkop, T.1
Rahmann, S.2
Röttger, R.3
Böcker, S.4
Baumbach, J.5
-
29
-
-
10244264813
-
Protein complex prediction via cost-based clustering
-
King, A.D., Pržulj, N. and Jurisica, I. (2004) Protein complex prediction via cost-based clustering. Bioinformatics, 20, 3013-3020
-
(2004)
Bioinformatics
, vol.20
, pp. 3013-3020
-
-
King, A.D.1
Pržulj, N.2
Jurisica, I.3
-
30
-
-
62249143532
-
Np-hardness of euclidean sum-of-squares clustering
-
Aloise, D., Deshpande, A., Hansen, P. and Popat, P. (2009) NP-hardness of Euclidean sum-of-squares clustering. Mach. Learn., 75, 245-248
-
(2009)
Mach. Learn
, vol.75
, pp. 245-248
-
-
Aloise, D.1
Deshpande, A.2
Hansen, P.3
Popat, P.4
-
31
-
-
67650468452
-
The planar k-means problem is np-hard
-
Springer-VerlagBerlin Heidelberg
-
Mahajan, M., Nimbhorkar, P. and Varadarajan, K. (2009) The planar k-means problem is NP-hard. In: WALCOM: Algorithms and Computation. Springer-Verlag, Berlin, Heidelberg, pp. 274-285
-
(2009)
WALCOM: Algorithms and Computation
, pp. 274-285
-
-
Mahajan, M.1
Nimbhorkar, P.2
Varadarajan, K.3
-
32
-
-
77954206273
-
Fabia: Factor analysis for bicluster acquisition
-
Hochreiter, S., Bodenhofer, U., Heusel, M., Mayr, A., Mitterecker, A., Kasim, A., Khamiakova, T., Van Sanden, S., Lin, D., Talloen, W. et al. (2010) FABIA: Factor analysis for bicluster acquisition. Bioinformatics, 26, 1520-1527
-
(2010)
Bioinformatics
, vol.26
, pp. 1520-1527
-
-
Hochreiter, S.1
Bodenhofer, U.2
Heusel, M.3
Mayr, A.4
Mitterecker, A.5
Kasim, A.6
Khamiakova, T.7
Van Sanden, S.8
Lin, D.9
Talloen, W.10
-
33
-
-
84864994884
-
Iterative signature algorithm for the analysis of large-scale gene expression data
-
Bergmann, S., Ihmels, J. and Barkai, N. (2003) Iterative signature algorithm for the analysis of large-scale gene expression data. Phys. Rev. E, 67, 031902
-
(2003)
Phys. Rev. E
, vol.67
, pp. 031902
-
-
Bergmann, S.1
Ihmels, J.2
Barkai, N.3
-
34
-
-
69849086336
-
QUBIC: A qualitative biclustering algorithm for analyses of gene expression data
-
Li, G., Ma, Q., Tang, H., Paterson, A.H. and Xu, Y. (2009) QUBIC: A qualitative biclustering algorithm for analyses of gene expression data. Nucleic Acids Res., 37, e101-e101
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Li, G.1
Ma, Q.2
Tang, H.3
Paterson, A.H.4
Xu, Y.5
-
35
-
-
0037399130
-
Spectral biclustering of microarray data: Coclustering genes and conditions
-
DOI 10.1101/gr.648603
-
Kluger, Y., Basri, R., Chang, J.T. and Gerstein, M. (2003) Spectral biclustering of microarray data: Coclustering genes and conditions. Genome Res., 13, 703-716. (Pubitemid 36511928
-
(2003)
Genome Research
, vol.13
, Issue.4
, pp. 703-716
-
-
Kluger, Y.1
Basri, R.2
Chang, J.T.3
Gerstein, M.4
-
36
-
-
0041627879
-
Extracting conserved gene expression motifs from gene expression data
-
World Scientific Printers(S) Pte Ltd., Singapore
-
Murali, T. and Kasif, S. (2003) Extracting conserved gene expression motifs from gene expression data. In: Pacific Symposium on Biocomputing, World Scientific Printers(S) Pte Ltd., Singapore. Vol. 8, pp. 77-88
-
(2003)
Pacific Symposium on Biocomputing
, vol.8
, pp. 77-88
-
-
Murali, T.1
Kasif, S.2
-
37
-
-
34249847958
-
PcaMethods-A bioconductor package providing PCA methods for incomplete data
-
DOI 10.1093/bioinformatics/btm069
-
Stacklies, W., Redestig, H., Scholz, M., Walther, D. and Selbig, J. (2007) pcaMethods-A bioconductor package providing PCA methods for incomplete data. Bioinformatics, 23, 1164-1167. (Pubitemid 47050571
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1164-1167
-
-
Stacklies, W.1
Redestig, H.2
Scholz, M.3
Walther, D.4
Selbig, J.5
-
38
-
-
33846689706
-
Using gostats to test gene lists for go term association
-
DOI 10.1093/bioinformatics/btl567
-
Falcon, S. and Gentleman, R. (2007) Using GOstats to test gene lists for GO term association. Bioinformatics, 23, 257-258. (Pubitemid 46189622
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
39
-
-
0025066941
-
More powerful procedures for multiple significance testing
-
Hochberg, Y. and Benjamini, Y. (1990) More powerful procedures for multiple significance testing. Stat. Med., 9, 811-818
-
(1990)
Stat. Med
, vol.9
, pp. 811-818
-
-
Hochberg, Y.1
Benjamini, Y.2
|