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Volumn 11, Issue 1, 2014, Pages 83-94

Evolution and controllability of cancernetworks: A boolean perspective

Author keywords

cancer evolution; Cancer networks; cancer robustness; strategy for targeted therapy

Indexed keywords

AMINO ACIDS; BIOLOGY; DIAGNOSIS; DISEASES; GENE EXPRESSION; REPAIR; TUMORS;

EID: 84901328682     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2013.128     Document Type: Article
Times cited : (22)

References (38)
  • 1
    • 79955879494 scopus 로고    scopus 로고
    • Controllability of complex networks
    • Y. Liu, J. Stoline, and A. Barabasi, "Controllability of Complex Networks, " Nature, vol. 473, no. 12, pp. 167-173, 2011.
    • (2011) Nature , vol.473 , Issue.12 , pp. 167-173
    • Liu, Y.1    Stoline, J.2    Barabasi, A.3
  • 2
    • 0016072062 scopus 로고
    • Structural controllability
    • June
    • C.T. Lin, "Structural Controllability, " IEEE Trans. Automatic Control, vol. 19, no. 3, pp. 201-208, June 1974.
    • (1974) IEEE Trans. Automatic Control , vol.19 , Issue.3 , pp. 201-208
    • Lin, C.T.1
  • 4
    • 84863449762 scopus 로고    scopus 로고
    • Controlling edge dynamics in complex networks
    • T. Nepusz and T. Vicsek, "Controlling Edge Dynamics in Complex Networks, " Nature Physics, vol. 8, pp. 568-773, 2012.
    • (2012) Nature Physics , vol.8 , pp. 568-773
    • Nepusz, T.1    Vicsek, T.2
  • 5
    • 84862665090 scopus 로고    scopus 로고
    • Nodal dynamics, not degree distributions, determine the structural controllability of complex networks
    • N.J. Cowan, E.J. Chastain, D.A. Vilhena, J.S. Freudenberg, and C.T. Bergstrom, "Nodal Dynamics, Not Degree Distributions, Determine the Structural Controllability of Complex Networks, " PLoS ONE, vol. 7, no. 6, p. e38398, 2012.
    • (2012) PLoS ONE , vol.7 , Issue.6
    • Cowan, N.J.1    Chastain, E.J.2    Vilhena, D.A.3    Freudenberg, J.S.4    Bergstrom, C.T.5
  • 6
    • 84881455921 scopus 로고    scopus 로고
    • Structural controllability of unidirectional bipartite networks
    • article 1647
    • J.C. Nacher and T. Akutsu, "Structural Controllability of Unidirectional Bipartite Networks, " Scientific Reports, vol. 3, article 1647 2013.
    • (2013) Scientific Reports , vol.3
    • Nacher, J.C.1    Akutsu, T.2
  • 7
    • 70449638287 scopus 로고    scopus 로고
    • Graph-Theoretic topologi-cal control of biological genetic networks
    • A. Aswani, N. Boyd, and C. Tomlin, "Graph-Theoretic Topologi-cal Control of Biological Genetic Networks, " Proc. Am. Control Conf., pp. 1700-1705, 2009.
    • (2009) Proc. Am. Control Conf. , pp. 1700-1705
    • Aswani, A.1    Boyd, N.2    Tomlin, C.3
  • 8
    • 84870662126 scopus 로고    scopus 로고
    • Optimization-based inference for temporally evolving networks with applications in biology
    • Y.H. Chang, J. Gray, and C. Tomlin, "Optimization-Based Inference for Temporally Evolving Networks with Applications in Biology, " J. Computational Biology, vol. 19, no. 12, pp. 1307-1323, 2012.
    • (2012) J. Computational Biology , vol.19 , Issue.12 , pp. 1307-1323
    • Chang, Y.H.1    Gray, J.2    Tomlin, C.3
  • 9
    • 1542619848 scopus 로고    scopus 로고
    • Cancer as a robust system: Implications for anticancer therapy
    • H. Kitano, "Cancer as a Robust System: Implications for Antican-cer Therapy, " Nature Rev. Cancer, vol. 4, pp. 227-235, 2004. (Pubitemid 38337502)
    • (2004) Nature Reviews Cancer , vol.4 , Issue.3 , pp. 227-235
    • Kitano, H.1
  • 12
    • 0242667828 scopus 로고    scopus 로고
    • Analysing differential gene expression in cancer
    • P. Liang and A. Bardee, "Analysing Differential Gene Expression in Cancer, " Nature Rev. Cancer, vol. 3, pp. 869-876, 2003. (Pubitemid 37376983)
    • (2003) Nature Reviews Cancer , vol.3 , Issue.11 , pp. 869-876
    • Liang, P.1    Pardee, A.B.2
  • 15
    • 67049159812 scopus 로고    scopus 로고
    • A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation
    • N.J. Hudson, A. Reverter, and B.P. Dalrymple, "A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation, " PLoS Computational Biology, vol. 5, no. 5, p. e1000382, 2009.
    • (2009) PLoS Computational Biology , vol.5 , Issue.5
    • Hudson, N.J.1    Reverter, A.2    Dalrymple, B.P.3
  • 16
    • 84878889746 scopus 로고    scopus 로고
    • Systematic tracking of dysregulated modules identifies novel genes in cancer
    • S. Srihari and M.A. Ragan, "Systematic Tracking of Dysregulated Modules Identifies Novel Genes in Cancer, " Bioinformatics, vol. 29, no. 12, pp. 1553-61, 2013.
    • (2013) Bioinformatics , vol.29 , Issue.12 , pp. 1553-1561
    • Srihari, S.1    Ragan, M.A.2
  • 18
    • 60849121964 scopus 로고    scopus 로고
    • Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies gene specifically overexpressed in tumour epithelia
    • L. Badea, V. Herlea, S.O. Dima, T. Dumitrascu, and I. Popescu, "Combined Gene Expression Analysis of Whole-Tissue and Microdissected Pancreatic Ductal Adenocarcinoma Identifies Gene Specifically Overexpressed in Tumour Epithelia, " Hepatogas-troenterology, vol. 55, pp. 2015-2026, 2008.
    • (2008) Hepatogas-troenterology , vol.55 , pp. 2015-2026
    • Badea, L.1    Herlea, V.2    Dima, S.O.3    Dumitrascu, T.4    Popescu, I.5
  • 20
    • 0035445792 scopus 로고    scopus 로고
    • A relationship between gene expression and protein interactions on the proteome scale: Analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae
    • A. Grigoriev, "A Relationship between Gene Expression and Protein Interactions on the Proteome Scale: Analysis of the Bacterio-phage T7 and the Yeast Saccharomyces Cerevisiae, " Nucleic Acids Research, vol. 29, pp. 3513-3519, 2001. (Pubitemid 32898765)
    • (2001) Nucleic Acids Research , vol.29 , Issue.17 , pp. 3513-3519
    • Grigoriev, A.1
  • 21
    • 0035733690 scopus 로고    scopus 로고
    • A relationship between gene expression and protein interactions on the prote-ome scale: Analysis of the bacteriophage t7 and the yeast saccha-romyces cerevisiae
    • H. Ge, Z. Liu, G.M. Church, and M. Vidal, "A Relationship between Gene Expression and Protein Interactions on the Prote-ome Scale: Analysis of the Bacteriophage T7 and the Yeast Saccha-romyces Cerevisiae, " Nature Genetics, vol. 29, pp. 482-486, 2001.
    • (2001) Nature Genetics , vol.29 , pp. 482-486
    • Ge, H.1    Liu, Z.2    Church, G.M.3    Vidal, M.4
  • 22
    • 0000142982 scopus 로고
    • The complexity of enumeration and reliability problems
    • L.G. Valiant, "The Complexity of Enumeration and Reliability Problems, " SIAM J. Computing, vol. 8, no. 3, pp. 410-421, 1979.
    • (1979) SIAM J. Computing , vol.8 , Issue.3 , pp. 410-421
    • Valiant, L.G.1
  • 27
    • 84874354420 scopus 로고    scopus 로고
    • A survey of computational methods for protein complex prediction from protein interaction networks
    • S. Srihari and H.W. Leong, "A Survey of Computational Methods for Protein Complex Prediction from Protein Interaction Networks, " J. Bioinformatics and Computational Biology, vol. 11, no. 2, p. 1230002, 2013.
    • (2013) J. Bioinformatics and Computational Biology , vol.11 , Issue.2 , pp. 1230002
    • Srihari, S.1    Leong, H.W.2
  • 28
    • 67650735594 scopus 로고    scopus 로고
    • Complex discovery from weigthed PPI networks
    • G. Liu, L.S. Wong, and H.N. Chua, "Complex Discovery from Weigthed PPI Networks, " Bioinformatics, vol. 25, pp. 1891-1897, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1891-1897
    • Liu, G.1    Wong, L.S.2    Chua, H.N.3
  • 30
    • 25144506952 scopus 로고    scopus 로고
    • Gene expression profiling of experimental traumatic spinal cord injury as a function of distance from impact site and injury severity
    • DOI 10.1152/physiolgenomics.00081.2005
    • A. De Baise, S.M. Knoblach, S.D. Giovanni, C. Fans, A. Molon, E.P. Hoffman, and A.I. Faden, "Gene Expression Profiling of Experimental Traumatic Spinal Cord Injury as a Function of Distance From Impact Site and Injury Severity, " Physiological Genomics, vol. 22, no. 3, pp. 368-381, 2005. (Pubitemid 41356368)
    • (2005) Physiological Genomics , vol.22 , pp. 368-381
    • De Biase, A.1    Knoblach, S.M.2    Di Giovanni, S.3    Fan, C.4    Molon, A.5    Hoffman, E.P.6    Faden, A.I.7
  • 33
    • 0037379603 scopus 로고    scopus 로고
    • Gene profiling in spinal cord injury shows role of cell cycle neuronal death
    • DOI 10.1002/ana.10472
    • D.S. Giovanni, S.M. Knolbach, C. Brandoli, S.A. Aden, E.P. Hoffman, and A.I. Faden, "Gene Profiling in Spinal Cord Injury Shows Role of Cell Cycle in Neuronal Death, " Annals of Neurology, vol. 53, no. 4, pp. 454-468, 2003. (Pubitemid 36373257)
    • (2003) Annals of Neurology , vol.53 , Issue.4 , pp. 454-468
    • Di Giovanni, S.1    Knoblach, S.M.2    Brandoli, C.3    Aden, S.A.4    Hoffman, E.P.5    Faden, A.I.6
  • 34
    • 48549092620 scopus 로고    scopus 로고
    • Construction of a Cancer-Perturbed Protein-Protein Interaction Network for Discovery of Apoptosis Drug Targets
    • article 56
    • L.H. Chu and B.S. Chen, "Construction of a Cancer-Perturbed Protein-Protein Interaction Network for Discovery of Apoptosis Drug Targets, " BMC Systems Biology, vol. 2, article 56, 2008.
    • (2008) BMC Systems Biology , vol.2
    • Chu, L.H.1    Chen, B.S.2
  • 37
    • 84874724662 scopus 로고    scopus 로고
    • Update on Activities at the Universal Protein Resource (UniProt) in 2013
    • The UniProt Consortium
    • The UniProt Consortium, "Update on Activities at the Universal Protein Resource (UniProt) in 2013, "Nucleic Acids Research, vol. 41, pp. D43-D47, 2013.
    • (2013) Nucleic Acids Research , vol.41
  • 38
    • 77957726465 scopus 로고    scopus 로고
    • Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology
    • K. Ning, H.K. Ng, S. Srihari, H.W. Leong, and A. Nesvizhskii, "Examination of the Relationship between Essential Genes in PPI Network and Hub Proteins in Reverse Nearest Neighbor Topology, " BMC Bioinformatics, vol. 11, no. 515, pp. 505-518, 2010.
    • (2010) BMC Bioinformatics , vol.11 , Issue.515 , pp. 505-518
    • Ning, K.1    Ng, H.K.2    Srihari, S.3    Leong, H.W.4    Nesvizhskii, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.