Sodiomyces alkalinus, a new holomorphic alkaliphilic ascomycete within the Plectosphaerellaceae

Persoonia: Molecular Phylogeny and Evolution of Fungi

Volumn 31, Issue , 2013, Pages 147-158

  Grum Grzhimaylo, A A ^a,c   Debets, A J M ^a   van Diepeningen, A D ^b   Georgieva, M L ^c   Bilanenko, E N ^c  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Alkaliphilic fungi; Growth; Heleococcum alkalinum; Molecular phylogeny; Scanning electron microscopy; Taxonomy

Indexed keywords

EID: 84901294910     PISSN: 00315850     EISSN: None     Source Type: Journal    
DOI: 10.3767/003158513X673080     Document Type: Article

References (38)

1. Bilanenko E, Sorokin D, Ivanova M, Kozlova M. 2005. Heleococcum alkali-num, a new alkali-tolerant ascomycete from saline soda soils. Mycotaxon 91: 497-507.
2. Binder M, Hibbett D. 2003. Oligonucleotides. http://www.clarku.edu/faculty/ dhibbett/Protocols_Folder/Primers/Primers.pdf.
3. Browne RA, MacDonald GH. 1982. Biogeography of the brine shrimp, Ar-temia: distribution of parthenogenetic and sexual populations. Journal of Biogeography 9: 331-338.
4. Carlucci A, Raimondo ML, Santos J, Phillips AJL. 2012. Plectosphaerella species associated with root and collar rots of horticultural crops in southern Italy. Persoonia 28: 34-48.
5. Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G. 2004. MycoBank: an online initiative to launch mycology into the 21st century. Studies in Mycology 50: 19-22.
6. van Diepeningen AD, Debets AJM, Slakhorst SM, Hoekstra RF. 2008. Mito-chondrial pAL2-1 plasmid homologs are senescence factors in Podospora anserina independent of intrinsic senescence. Biotechnology Journal 3: 791-802.
7. Duc PM, Hatai K, Kurata O, Tensha K, Yoshitaka U, et al. 2009. Fungal infection of mantis shrimp (Oratosquilla oratoria) caused by two anamorphic fungi found in Japan. Mycopathologia 167: 229-247.
8. Elíades LA, Cabello MN, Voget CE. 2006. Contribution to the study of alkalo-philic and alkali-tolerant ascomycota from Argentina. Darwiniana 44: 64-73.
9. Eriksson OE (ed). 2006. Outline of Ascomycota - 2006. Myconet 12: 1-82.
10. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
11. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, et al. 2007. A higher-level phylogenetic classification of the fungi. Mycological Research 111: 509-547.
12. Horikoshi K. 1999. Alkaliphiles: some applications of their products for biotechnology. Microbiology and Molecular Biology Reviews 63: 735-750.
13. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylo-genetic trees. Bioinformatics 17: 754-755.
14. Johnson HW. 1923. Relationships between hydrogen ion, hydroxyl ion and salt concentrations and the growth of seven soil molds. Agricultural Experiment Station, Iowa State College of Agriculture and the Mechanic Arts. Research Bulletin 76: 307-344.
15. Jørgensen CA. 1922. Heleococcum aurantiacum n. gen. et n. spec. Botanisk Tidsskrift 37: 417-420.
16. Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 286-298.
17. Kladwang W, Bhumirattana A, Hywel-Jones N. 2003. Alkaline-tolerant fungi from Thailand. Fungal Diversity 13: 69-83.
18. Kohlmeyer J, Spatafora JW, Volkmann-Kohlmeyer B. 2000. Lulworthiales, a new order of marine Ascomycota. Mycologia 92: 453-458.
19. Maddison WP, Maddison DR. 2010. Mesquite: a modular system for evolutionary analysis. Version 2.73 http://mesquiteproject.org.
20. Mueller GM, Bills GF, Foster MS (eds). 2004. Biodiversity of fungi: inventory and monitoring methods. Elsevier Academic Press, Amsterdam.
21. Nagai K, Sakai T, Rantiatmodjo R, Suzuki K, Gams W, Okada G. 1995. Studies on the distribution of alkalophilic and alkali-tolerant soil fungi I. Mycoscience 36: 247-256.
22. Nagai K, Suzuki K, Okada G. 1998. Studies on the distribution of alkalophilic and alkali-tolerant soil fungi II: fungal flora in two limestone caves in Japan. Mycoscience 39: 293-298.
23. Okada G, Niimura Y, Sakata T, Uchimura T, Ohara N, et al. 1993. Acremonium alcalophilum, a new alkalophilic cellulolytic hyphomycete. Transactions of the Mycological Society of Japan 34: 171-185.
24. Perkins DD, Pollard VC. 1986. Linear growth rates of strains representing ten Neurospora species. Fungal Genetics Newsletter 33: 41-43.
25. Posada D. 2008. Jmodeltest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
26. Posada D, Buckley TR. 2004. Model selection and model averaging in phylo-genetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests. Systematic Biology 53: 793-808.
27. Rannala B, Yang ZH. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
28. Reblova M, Gams W, Seifert KA. 2011. Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales. Studies in Mycology 68: 163-191.
29. Rossman AY, McKemy JM, Pardo-Schultheiss RA, Schroers H-J. 2001. Molecular studies of the Bionectriaceae using large subunit rDNA sequences. Mycologia 93: 100-110.
30. Schroers H-J, Geldenhuis MM, Wingfield MJ, Schoeman MH, Yen Y-F, et al. 2005. Classification of the guava wilt fungus Myxosporium psidii, the palm pathogen Gliocladium vermoesenii and the persimmon wilt fungus Acremonium diospyri in Nalanthamala. Mycologia 97: 375-395.
31. Sukumaran J, Holder MT. 2010. DendroPy: A Python library for phylogenetic computing. Bioinformatics 26: 1569-1571.
32. Tubaki K. 1967. An undescribed species of Heleococcum from Japan. Transactions of the Mycological Society of Japan 8: 5-10.
33. Udagawa S, Uchiyama S, Kamiya S. 1995. Two new species of Heleococcum with Acremonium anamorphs. Mycoscience 36: 37-43.
34. Watanabe T, Watanabe Y, Fukatsu T. 2001. New species of Acremonium, Cylindrocarpon and Verticillium from soil in the Bonin (Ogasawara) Islands, Japan. Mycoscience 42: 591-595.
35. Weisenborn JLF, Kirschner R, Piepenbring M. 2010. A new darkly pigmented and keratinolytic species of Acremonium (Hyphomycetes) with relationship to the Plectosphaerellaceae from human skin and nail lesions in Panama. Nova Hedwigia 90: 457-468.
36. Zare R, Gams W, Starink-Willemse M, Summerbell RC. 2007. Gibellulopsis, a suitable genus for Verticillium nigrescens, and Musicillium, a new genus for V. theobromae. Nova Hedwigia 85: 463-489.
37. Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, et al. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98: 1076-1087.
38. Zwickl DJ. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD dissertation. The University of Texas at Austin.