Growing yeast into cylindrical colonies

Biophysical Journal

Volumn 106, Issue 10, 2014, Pages 2214-2221

  Vulin, Clément ^a   Di Meglio, Jean Marc ^a   Lindner, Ariel B ^b   Daerr, Adrian ^a   Murray, Andrew ^c   Hersen, Pascal ^a,d  

^a UNIVERSITÉ PARIS DIDEROT   (France)

^b INSERM   (France)

^c HARVARD UNIVERSITY   (United States)

^d NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL MEMBRANE; GLUCOSE;

ARTIFICIAL MEMBRANE; CELL PROLIFERATION; CULTURE TECHNIQUE; CYTOLOGY; DOSE RESPONSE; DRUG EFFECTS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROTECHNOLOGY; POROSITY; PROCEDURES; SACCHAROMYCES CEREVISIAE; TRANSPORT AT THE CELLULAR LEVEL;

BIOLOGICAL TRANSPORT; CELL PROLIFERATION; CULTURE TECHNIQUES; DOSE-RESPONSE RELATIONSHIP, DRUG; GLUCOSE; MEMBRANES, ARTIFICIAL; MICROTECHNOLOGY; POROSITY; SACCHAROMYCES CEREVISIAE;

EID: 84901281453     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2014.02.040     Document Type: Article

References (37)

1. J.W.T. Wimpenny The growth and form of bacterial colonies J. Gen. Microbiol. 114 1979 483 486
2. J.A. Shapiro Thinking about bacterial populations as multicellular organisms Annu. Rev. Microbiol. 52 1998 81 104
3. J.A. Granek, and P.M. Magwene Environmental and genetic determinants of colony morphology in yeast PLoS Genet. 6 2010 e1000823
4. L.Z. Pipe, and M.J. Grimson Spatial-temporal modelling of bacterial colony growth on solid media Mol. Biosyst. 4 2008 192 198
5. M. Kuthan, and F. Devaux Z. Palková Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology Mol. Microbiol. 47 2003 745 754
6. Z. Palková Multicellular microorganisms: laboratory versus nature EMBO Rep. 5 2004 470 476
7. B. Nguyen, and A. Upadhyaya M.P. Brenner Elastic instability in growing yeast colonies Biophys. J. 86 2004 2740 2747
8. Z. Palková, and B. Janderová J. Forstová Ammonia mediates communication between yeast colonies Nature 390 1997 532 536
9. S.J. Pirt A kinetic study of the mode of growth of surface colonies of bacteria and fungi J. Gen. Microbiol. 47 1967 181 197
10. L. Mináriková, and M. Kuthan Z. Palková Differentiated gene expression in cells within yeast colonies Exp. Cell Res. 271 2001 296 304
11. L. Váchová, and O. Chernyavskiy Z. Palková Architecture of developing multicellular yeast colony: spatio-temporal expression of Ato1p ammonium exporter Environ. Microbiol. 11 2009 1866 1877
12. R. Scherz, V. Shinder, and D. Engelberg Anatomical analysis of Saccharomyces cerevisiae stalk-like structures reveals spatial organization and cell specialization J. Bacteriol. 183 2001 5402 5413
13. M. Cáp, and L. Stěpánek Z. Palková Cell differentiation within a yeast colony: metabolic and regulatory parallels with a tumor-affected organism Mol. Cell 46 2012 436 448
14. B.F. Gray, and N.A. Kirwan Growth rates of yeast colonies on solid media Biophys. Chem. 1 1974 204 213
15. R.S. Kamath, and H.R. Bungay Growth of yeast colonies on solid media J. Gen. Microbiol. 134 1988 3061 3069
16. H. Fujikawa, and S. Morozumi Modeling surface growth of Escherichia coli on agar plates Appl. Environ. Microbiol. 71 2005 7920 7926
17. M.J.I. Muller, and B.I. Neugeboren A.W. Murray Genetic drift opposes mutualism during spatial population expansion Proc. Natl. Acad. Sci. USA. 2014 10.1073/pnas.1313285111 Published online January 3, 2014
18. J. Pérez, C. Picioreanu, and M. van Loosdrecht Modeling biofilm and floc diffusion processes based on analytical solution of reaction-diffusion equations Water Res. 39 2005 1311 1323
19. F. Evenou, and J.-M. Di Meglio P. Hersen Micro-patterned porous substrates for cell-based assays Lab Chip 12 2012 1717 1722
20. Rasband, W. S. ImageJ, U. S. National Institutes of Health, Bethesda, Maryland. http://imagej.nih.gov/ij/.
21. D.B. Weibel, W.R. Diluzio, and G.M. Whitesides Microfabrication meets microbiology Nat. Rev. Microbiol. 5 2007 209 218
22. D.B. Weibel, and A. Lee G.M. Whitesides Bacterial printing press that regenerates its ink: contact-printing bacteria using hydrogel stamps Langmuir 21 2005 6436 6442
23. D. Engelberg, and A. Mimran G.R. Fink Multicellular stalk-like structures in Saccharomyces cerevisiae J. Bacteriol. 180 1998 3992 3996
24. J. Crank The Mathematics of Diffusion 1970 Oxford University Press Oxford, United Kingdom
25. J.A. Diderich, and M. Schepper A.L. Kruckeberg Glucose uptake kinetics and transcription of HXT genes in chemostat cultures of Saccharomyces cerevisiae J. Biol. Chem. 274 1999 15350 15359
26. H. Youk, and A. van Oudenaarden Growth landscape formed by perception and import of glucose in yeast Nature 462 2009 875 879
27. E. Reifenberger, E. Boles, and M. Ciriacy Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression Eur. J. Biochem. 245 1997 324 333
28. S.A. Frank The trade-off between rate and yield in the design of microbial metabolism J. Evol. Biol. 23 2010 609 613
29. J.-U. Kreft Biofilms promote altruism Microbiology 150 2004 2751 2760
30. C.D. Nadell, K.R. Foster, and J.B. Xavier Emergence of spatial structure in cell groups and the evolution of cooperation PLOS Comput. Biol. 6 2010 e1000716
31. R.C. MacLean, and I. Gudelj Resource competition and social conflict in experimental populations of yeast Nature 441 2006 498 501
32. H.J. Kim, and J.Q. Boedicker R.F. Ismagilov Defined spatial structure stabilizes a synthetic multispecies bacterial community Proc. Natl. Acad. Sci. USA 105 2008 18188 18193
33. M. Rieger, O. Käppeli, and A. Fiechter The role of limited respiration in the incomplete oxidation of glucose by Saccharomyces cerevisiae J. Gen. Microbiol. 129 1983 653 661
34. E. Postma, W.A. Scheffers, and J.P. van Dijken Kinetics of growth and glucose transport in glucose-limited chemostat cultures of Saccharomyces cerevisiae CBS 8066 Yeast 5 1989 159 165
35. Bionumbers. http://bionumbers.hms.harvard.edu.
36. L. Weng, and S. Liang J. Xu Transport of glucose and poly(ethylene glycol)s in agarose gels studied by the refractive index method Macromolecules 38 2005 5236 5242
37. A. Converti, and M. Casagrande M. Del Borghi Evaluation of glucose diffusion coefficient through cell layers for the kinetic study of an immobilized cell reactor Chem. Eng. Sci. 51 1996 1023 1026