Horizontal gene transfer

Agrobacterium: From Biology to Biotechnology

Volumn , Issue , 2008, Pages 623-647

  Tanaka, Nobukazu ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84900896449     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-0-387-72290-0_17     Document Type: Chapter

References (69)

1. Ahuja MA (1962) A cytogenetic study of heritable tumors in Nicotiana species hybrids. Genetics 47: 865-880
2. Ahuja MA (1966) Genetic tumors and introgression in Nicotiana. Genetics 54: 316
3. Ahuja MA (1968) An hypothesis and evidence concerning the genetic components controlling tumor formation in Nicotiana. Mol Gen Genet 103: 176-184
4. Ahuja MA (1998) Genetic tumors in Nicotiana and other plants. Q Rev Biol 73: 439-462
5. Ames IH, Mistretta PW (1975) Auxin: its role in genetic tumor induction. Plant Physiol 56: 744-746
6. Aoki S (2004) Resurrection of an ancestral gene: functional and evolutionary analyses of the Ngrol genes transferred from Agrobacterium to Nicotiana. J Plant Res 117: 329-337
7. Aoki S, Ito M (2000) Molecular phylogeny of Nicotiana (Solanaceae) based on the nucleotide sequence of the matK gene. Plant Bio 2: 316-324
8. Aoki S, Ito M (2001) Consideration of the classification system and phytogeogra-phy of the Nicotiana (Solanaceae) by the analysis of molecular phylogeny. Pro Jap Soc PI Tax 16: 49-67
9. Aoki S, Kawaoka A, Sekine M, Ichikawa T, Fujita T, Shinmyo A, Syono K (1994) Sequence of the cellular T-DNA in the untransformed genome of Nicotiana glauca that is homologous to ORFs 13 and 14 of the Ri plasmid and analysis of its expression in genetic tumours of N. glauca × N. langsdorffii. Mol Gen Genet 243: 706-710
10. Aoki S, Syono K (1999a) Function of Ngrol genes in the evolution of Nicotiana glauca: Conservation of the function of NgORF13 and NgORF14 after ancient infection by an Agrobacterium rhizogenes-like ancestor. Plant Cell Physiol 40: 222-230
11. Aoki S, Syono K (1999b) Horizontal gene transfer and mutation: Ngrol genes in the genome of Nicotiana glauca. Proc Natl Acad Sci USA 96: 13229-13234
12. Baumann K, De Paolis A, Costantino P, Gualberti G (1999) The DNA binding site of the Dof protein NtBBF1 is essential for tissue-specific and auxin-regulated expression of the rolB oncogene in plants. Plant Cell 11: 323-334
13. Bayer MH (1967) Thin-layer chromatography of auxin and inhibitors in Nicotiana glauca, N. langsdorffii and three of their tumor-forming hybrids. Planta 72: 329-337
14. Bouchez D, Tourneur J (1991) Organization of the agropine synthesis region of the T-DNA of the Ri plasmid from Agrobacterium rhizogenes. Plasmid 25: 27-39
15. Broothaerts W, Mitchell HJ, Weir B, Kaines S, Smith LM, Yang W, Mayer JE, Roa-Rodriguez C, Jefferson RA (2005) Gene transfer to plants by diverse species of bacteria. Nature 433: 629-633
16. Camilleri C, Jouanin L (1991) The TR-DNA region carrying the auxin synthesis genes of the Agrobacterium rhizogenes agropine-type plasmid pRiA4: nucleo-tide sequence analysis and introduction into tobacco plants. Mol Plant-Microbe Interact 4: 155-162
17. Casanova E, Trillas MI, Moysset L, Vainstein A (2005) Influence of rol genes in floriculture. Biotechnol Adv 23: 3-39
18. De Buck S, Jacobs A, Van Montagu M, Depicker A (1999) The DNA sequences of T-DNA junctions suggest that complex T-DNA loci are formed by a recombination process resembling T-DNA integration. Plant J 20: 295-304
19. Dessaux Y, Petit A, Tempé J (1993) Chemistry and biochemistry of opines, chemical mediators of parasitism. Phytochemistry 34: 31-38
20. Feng XH, Dube SK, Bottino PJ, Kung SD (1990) Restoration of shooty morphology of a nontumorous mutant of Nicotiana glauca × N. langsdorffii by cyto-kinin and the isopentenyltransferase gene. Plant Mol Biol 15: 407-420
21. Fründt C, Meyer AD, Ichikawa T, Meins F, Jr. (1998) A tobacco homologue of the Ri-plasmid orf13 gene causes cell proliferation in carrot root discs. Mol Gen Genet 259: 559-568
22. Fujita T (1994) Screening of genes related to tumor formation in tobacco genetic tumors. Plant Tiss Cult Lett 11: 171-177
23. Fujita T, Ichikawa T, Syono K (1991) Changes in morphology, levels of endogenous IAA and protein composition in relation to the development of tobacco genetic tumor induced in the dark. Plant Cell Physiol 32: 169-177
24. Furner IJ, A. HG, Amasino RM, Garfinkel DJ, Gordon MP, Nester EW (1986) An Agrobacterium transformation in the evolution of the genus Nicotiana. Nature 319: 422-427
25. Gelvin SB (2005) Agricultural biotechnology: gene exchange by design. Nature 433: 583-584
26. Goodspeed TH (1954) The Genus Nicotiana, Chronica Botanica. Waltham, Massachusetts
27. Handayani NSN, Moriuchi H, Yamakawa M, Yamashita I, Yoshida K, Tanaka N (2005) Characterization of the rolB promoter on mikimopine-type pRi1724 T-DNA. Plant Sci 108: 1353-1364
28. Hansen G, Larribe M, Vaubert D, Tempé J, Biermann BJ, Montoya AL, Chilton M-D, Brevet J (1991) Agrobacterium rhizogenes pRi8196 T-DNA: mapping and DNA sequence of functions involved in mannopine synthesis and hairy root differentiation. Proc Natl Acad Sci USA 88: 7763-7767
29. Ichikawa T, Kobayashi M, Nakagawa S, Sakurai A, Syono K (1989) Morphological observations and qualitative and quantitative studies of auxins after induction of tobacco genetic tumor. Plant Cell Physiol 30: 57-63
30. Ichikawa T, Ozeki Y, Syono K (1990) Evidence for the expression of the rol genes of Nicotiana glauca in genetic tumors of N. glauca X N. langsdorffii. Mol Gen Genet 220: 177-180
31. Japan Tobacco Inc. (1990) Illustrated Book of The Genus Nicotiana. Seibundo Shinkosha Publishing Co., Tokyo, Japan
32. Intrieri MC, Buiatti M (2001) The horizontal transfer of Agrobacterium rhizogenes genes and the evolution of the genus Nicotiana. Mol Phylogenet Evol 20: 100-110
33. Journin L, Bouchezs D, Drong RF, Tepfer D, Slightom JL (1989) Analysis of TR-DNA/plant junctions in the genome of Convolvulus arvensis clone transformed by Agrobacterium rhizogenes strain A4. Plant Mol Biol 12: 72-85
34. Kostoff D (1930) Tumors and other malformations on certain Nicotiana hybrids. Zentralbl Bakteriol Parasitenkd Infectionskr Hyg Abt 1: Org 81: 244-260
35. Kung SD (1989) Genetic tumors in Nicotiana. Bot Bull Acad Sinica 30: 231-240
36. Kwok WW, Nester EW, Gordon MP (1985) Unusual plasmid DNA organization in an octopine crown gall tumor. Nucleic Acids Res 13: 459-471
37. Limami MA, Sun LY, Douat C, Helgeson J, Tepfer D (1998) Natural genetic transformation by Agrobacterium rhizogenes. Annual flowering in two biennials, belgian endive and carrot. Plant Physiol 118: 543-550
38. Meyer AD, Ichikawa T, Meins F, Jr. (1995) Horizontal gene transfer: regulated expression of a tobacco homologue of the Agrobacterium rhizogenes rolC gene. Mol Gen Genet 249: 265-273
39. Moriguchi K, Maeda Y, Satou M, Hardayani NS, Kataoka M, Tanaka N, Yoshida K (2001) The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in Rhizobiaceae. J Mol Biol 307: 771-784
40. Moriuchi H, Okamoto C, Nishihama R, Yamashita I, Machida Y, Tanaka N (2004) Nuclear localization and interaction of RolB with plant 14-3-3 proteins correlates with induction of adventitious roots by the oncogene rolB. Plant J 38: 260-275
41. Nachmias B, Ugolini S, Ricci MD, Pellegrini MG, Bogani P, Bettini P, Inzé D, Buiatti M (1987) Tumor formation and morphogenesis on different Nicotiana sp. and hybrids induced by Agrobacterium tumefaciens T-DNA mutants. Dev Genet 8: 61-71
42. Näf U (1958) Studies on tumor formation in Nicotiana hybrids. I. The classification of the parents into two etiologically significant groups. Growth 22: 167-180
43. Nagata N, Kosono S, Sekine M, Shinmyo A, Syono K (1995) The regulatory functions of the rolB and rolC genes of Agrobacterium rhizogenes are conserved in the homologous genes (Ngrol) of Nicotiana glauca in tobacco genetic tumors. Plant Cell Physiol 36: 1003-1012
44. Nagata N, Kosono S, Sekine M, Shinmyo A, Syono K (1996) Different expression patterns of the promoter of the NgrolB and NgrolC genes during the development of tobacco genetic tumors. Plant Cell Physiol 37: 489-493
45. Nandi SK, de Klerk GJM, Parker CW, Palni LSM (1990a) Endogenous cytokinin levels and metabolism of zeatin riboside in genetic tumour tissues and non-tumourous tissues of tobacco. Physiol Plant 78: 197-204
46. Nandi SK, Palni LSM, Parker CW (1990b) Dynamic of endogenous cytokinin during the growth cycle of a hormone-autotrophic genetic tumor line of tobacco. Plant Physiol 94: 1084-1089
47. Oger P, Mansouri H, Dessaux Y (2000) Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines. Mol Ecol 9: 881-890
48. Oger P, Petit A, Dessaux Y (1997) Genetically engineered plants producing opines alter their biological environment. Nat Biotechnol 15: 369-372
49. Okamuro JK, Goldberg RB (1985) Tobacco single-copy DNA is highly homologous to sequences present in the genomes of its diploid progenies. Mol Gen Genet 198: 290-298
50. Röder FT, Schmulling T, Gatz C (1994) Efficiency of the tetracycline-dependent gene expression system: complete suppression and efficient induction of the rolB phenotype in transgenic plants. Mol Gen Genet 243: 32-38
51. Serino G, Clerot D, Brevet J, Costantino P, Cardarelli M (1994) rol genes of Agrobacterium rhizogenes cucumopine strain: sequence, effects and pattern of expression. Plant Mol Biol 26: 415-422
52. Sinkar VP, White FF, Furner IJ, Abrahamsen M, Pythoud F, Gordon MP (1988) Reversion of aberrant plants transformed with Agrobacterium rhizogenes is associated with the transcriptional inactivation of the TL-DNA genes. Plant Physiol 86: 584-590
53. Slightom JL, Durand-Tardif M, Jouanin L, Tepfer D (1986) Nucleotide sequence analysis of TL-DNA of Agrobacterium rhizogenes agropine type plasmid. Identification of open reading frames. J Biol Chem 261: 108-121
54. Smith HH (1968) Recent cytogenetic studies in the genus Nicotiana. Adv Genet 14: 1-54
55. Smith HH (1988) The inheritance of genetic tumors in Nicotiana hybrids. J Heredity 79: 277-283
56. Spanò L, Pomponi M, Costantino P, van Slogteren GMS, Tempé J (1982) Identification of T-DNA in the root-inducting plasmid of the agropine type Agrobac-terium rhizogenes 1855. Plant Mol Biol 1: 291-300
57. Suzuki K, Tanaka N, Kamada H, Yamashita I (2001) Mikimopine synthase (mis) gene on pRi1724. Gene 263: 49-58
58. Suzuki K, Yamashita I, Tanaka N (2002) Tobacco plants were transformed by Agrobacterium rhizogenes infection during their evolution. Plant J 32: 775-787
59. Tanaka N, Ikeda T, Oka A (1994) Nucleotide sequence of the rol region of the mikimopine-type root-inducing plasmid pRi1724. Biosci Biotechnol Biochem 58: 548-551
60. Tanaka N, Matsumoto T (1993) Regenerants from Ajuga hairy roots with high productivity of 20-hydroxyecdysone. Plant Cell Rep 13: 87-90
61. Tanaka N, Yamakawa M, Yamashita I (1998) Characterization of transcription of genes involved in hairy root induction on pRi1724 core-T-DNA in two Ajuga reptans hairy root lines. Plant Sci 137: 95-105
62. Taylor BH, White FF, Nester EW, Gordon MP (1985) Transcription of Agrobac-terium rhizogenes A4 T-DNA. Mol Gen Genet 201: 546-553
63. Tepfer D (1982) La transfromation génétique de plants supérieures par Agrobacte-rium rhizogenes. In 2ed Colloque sur les Recherches Fruitéres-Bordeaux, pp 47-59
64. Tepfer D (1984) Transformation of several species of higher plants by Agrobacte-rium rhizogenes: sexual transmission of the transformed genotype and pheno-type. Cell 37: 959-967
65. Thomashow MF, Nutter R, Montoya AL, Gordon MP, Nester EW (1980) Integration and organization of Ti plasmid sequences in crown gall tumors. Cell 19: 729-739
66. Udagawa M, Aoki S, Syono K (2004) Expression analysis of the NgORF13 promoter during the development of tobacco genetic tumors. Plant Cell Physiol 45: 1023-1031
67. White FF, Garfinkel DJ, Huffman GA, Gordon MP, Nester EW (1983) Sequence homologous to Agrobacterium rhizogenes T-DNA in the genomes of unin-fected plants. Nature 301: 348-350
68. White FF, Ghidossi G, Gordon MP, Nester EW (1982) Tumor induction by Agro-bacterium rhizogenes involves the transfer of plasmid DNA to the plant genome. Proc Natl Acad Sci USA 79: 3193-3197
69. Yang F, Simpson RB (1981) Revertant seedling from crown gall tumors retain a portion of the bacterial Ti plasmid sequences. Proc Natl Acad Sci USA 78: 4151-4155