Noncoding RNA-related polymorphisms in pediatric acute lymphoblastic leukemia susceptibility

Pediatric Research

Volumn 75, Issue 6, 2014, Pages 767-773

  Gutierrez Camino, Angela ^a   Lopez Lopez, Elixabet ^a   Martin Guerrero, Idoia ^a   Piñan, Maria A ^b   Garcia Miguel, Purificacion ^c   Sanchez Toledo, Jose ^d   Carbone Bañeres, Ana ^e   Uriz, Javier ^f   Navajas, Aurora ^b   Garcia Orad, Africa ^a  

^a UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

^b HOSPITAL DE CRUCES   (Spain)

^c HOSPITAL UNIVERSITARIO LA PAZ   (Spain)

^d HOSPITAL UNIVERSITARI VALL D HEBRON   (Spain)

^e HOSPITAL UNIVERSITARIO MIGUEL SERVET   (Spain)

^f HOSPITAL DONOSTIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 1 PROTEIN; MICRORNA; MICRORNA 499; MICRORNA 499B; MICRORNA 612; UNCLASSIFIED DRUG; UNTRANSLATED RNA; MIRN499 MICRORNA, HUMAN; MIRN612 MICRORNA, HUMAN;

ACUTE LYMPHOBLASTIC LEUKEMIA; ADOLESCENT; ARTICLE; BIOGENESIS; CANCER RISK; CANCER SUSCEPTIBILITY; CHILD; CHILDHOOD LEUKEMIA; CNOT1 GENE; CONTROLLED STUDY; DGCR8 GENE; DROSHA GENE; FEMALE; GENE EXPRESSION; GENETIC ASSOCIATION; HUMAN; MAJOR CLINICAL STUDY; MALE; PRIORITY JOURNAL; RNA PROCESSING; SINGLE NUCLEOTIDE POLYMORPHISM; TNRC6B GENE; TUMOR GENE; GENETIC PREDISPOSITION; GENETICS;

CHILD; GENETIC ASSOCIATION STUDIES; GENETIC PREDISPOSITION TO DISEASE; HUMANS; MICRORNAS; POLYMORPHISM, SINGLE NUCLEOTIDE; PRECURSOR CELL LYMPHOBLASTIC LEUKEMIA-LYMPHOMA; RNA, UNTRANSLATED;

EID: 84900839875     PISSN: 00313998     EISSN: 15300447     Source Type: Journal    
DOI: 10.1038/pr.2014.43     Document Type: Article

References (40)

1. Ellinghaus E, Stanulla M, Richter G, et al. Identifcation of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblas-tic leukemia. Leukemia 2012;26:902-9.
2. Treviño LR, Yang W, French D, et al. Germline genomic variants associated with childhood acute lymphoblastic leukemia. Nat Genet 2009;41:1001-5.
3. Papaemmanuil E, Hosking FJ, Vijayakrishnan J, et al. Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lympho-blastic leukemia. Nat Genet 2009;41:1006-10.
4. Ryan BM, Robles AI, Harris CC. Genetic variation in microRNA networks: the implications for cancer research. Nat Rev Cancer 2010;10:389-402.
5. Vinci S, Gelmini S, Mancini I, et al. Genetic and epigenetic factors in regulation of microRNA in colorectal cancers. Methods 2013;59:138-46.
6. Zhang H, Yang JH, Zheng YS, et al. Genome-wide analysis of small RNA and novel microRNA discovery in human acute lymphoblastic leukemia based on extensive sequencing approach. PLoS One 2009;4:e6849.
7. Schotte D, Akbari Moqadam F, Lange-Turenhout EA, et al. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. Leukemia 2011;25:1389-99.
8. Hasani SS, Hashemi M, Eskandari-Nasab E, Naderi M, Omrani M, Shey-bani-Nasab M. A functional polymorphism in the miR-146a gene is associated with the risk of childhood acute lymphoblastic leukemia: a preliminary report. Tumour Biol 2014;35:219-25.
9. Salzman DW, Weidhaas JB. SNPing cancer in the bud: microRNA and microRNA-target site polymorphisms as diagnostic and prognostic bio-markers in cancer. Pharmacol Ter 2013;137:55-63.
10. Kim HK, Prokunina-Olsson L, Chanock SJ. Common genetic variants in miR-1206 (8q24.2) and miR-612 (11q13.3) afect biogenesis of mature miRNA forms. PLoS One 2012;7:e47454.
11. Friedman RC, Farh KK, Burge CB, Bartel DP. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 2009;19:92-105.
12. Kim WH, Min KT, Jeon YJ, et al. Association study of microRNA polymorphisms with hepatocellular carcinoma in Korean population. Gene 2012;504:92-7.
13. Liu Z, Li G, Wei S, et al. Genetic variants in selected pre-microRNA genes and the risk of squamous cell carcinoma of the head and neck. Cancer 2010;116:4753-60.
14. Ahn DH, Rah H, Choi YK, et al. Association of the miR-146aC>G, miR-149T>C, miR-196a2T>C, and miR-499A>G polymorphisms with gastric cancer risk and survival in the Korean population. Mol Carcinog 2013;52:Suppl 1:E39-51.
15. Xiang Y, Fan S, Cao J, Huang S, Zhang LP. Association of the microRNA-499 variants with susceptibility to hepatocellular carcinoma in a Chinese population. Mol Biol Rep 2012;39:7019-23.
16. Zhou B, Wang K, Wang Y, et al. Common genetic polymorphisms in pre-microRNAs and risk of cervical squamous cell carcinoma. Mol Carcinog 2011;50:499-505.
17. Hu Z, Chen J, Tian T, et al. Genetic variants of miRNA sequences and non-small cell lung cancer survival. J Clin Invest 2008;118:2600-8.
18. Alshatwi AA, Shaf G, Hasan TN, et al. Diferential expression profle and genetic variants of microRNAs sequences in breast cancer patients. PLoS One 2012;7:e30049.
19. George G P, Gangwar R, Mandal RK, Sankhwar SN, Mittal RD. Genetic variation in microRNA genes and prostate cancer risk in North Indian population. Mol Biol Rep 2011;38:1609-15.
20. Akkiz H, Bayram S, Bekar A, Akgöllü E, Üsküdar O. Genetic variation in the microRNA-499 gene and hepatocellular carcinoma risk in a Turkish population: lack of any association in a case-control study. Asian Pac J Cancer Prev 2011;12:3107-12.
21. Catucci I, Yang R, Verderio P, et al. Evaluation of SNPs in miR-146a, miR196a2 and miR-499 as low-penetrance alleles in German and Italian familial breast cancer cases. Hum Mutat 2010;31:E1052-7.
22. Min KT, Kim J W, Jeon YJ, et al. Association of the miR-146aC>G, 149C>T, 196a2C>T, and 499A>G polymorphisms with colorectal cancer in the Korean population. Mol Carcinog 2012;51:Suppl 1:E65-73.
23. Okubo M, Tahara T, Shibata T, et al. Association between common genetic variants in pre-microRNAs and gastric cancer risk in Japanese population. Helicobacter 2010;15:524-31.
24. Tian T, Shu Y, Chen J, et al. A functional genetic variant in microRNA-196a2 is associated with increased susceptibility of lung cancer in Chinese. Cancer Epidemiol Biomarkers Prev 2009;18:1183-7.
25. Yang H, Dinney CP, Ye Y, Zhu Y, Grossman HB, Wu X. Evaluation of genetic variants in microRNA-related genes and risk of bladder cancer. Cancer Res 2008;68:2530-7.
26. Qiu MT, Hu J W, Ding XX, et al. Hsa-miR-499 rs3746444 polymorphism contributes to cancer risk: a meta-analysis of 12 studies. PLoS One 2012;7:e50887.
27. Andersson A, Ritz C, Lindgren D, et al. Microarray-based classifcation of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status. Leukemia 2007;21:1198-203.
28. Li Z, Zhang W, Wu M, et al. Gene expression-based classifcation and regulatory networks of pediatric acute lymphoblastic leukemia. Blood 2009;114:4486-93.
29. Chung TK, Lau TS, Cheung TH, et al. Dysregulation of microRNA-204 mediates migration and invasion of endometrial cancer by regulating FOXC1. Int J Cancer 2012;130:1036-45.
30. Catto JW, Miah S, Owen HC, et al. Distinct microRNA alterations characterize high-and low-grade bladder cancer. Cancer Res 2009;69:8472-81.
31. Tao S, Wang Z, Feng J, et al. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. Carcinogen-esis 2012; 33: 598-603.
32. Sun J, Zheng SL, Wiklund F, et al. Sequence variants at 22q13 are associated with prostate cancer risk. Cancer Res 2009;69:10-5.
33. Horikawa Y, Wood CG, Yang H, et al. Single nucleotide polymorphisms of microRNA machinery genes modify the risk of renal cell carcinoma. Clin Cancer Res 2008;14:7956-62.
34. Kim JS, Choi YY, Jin G, et al. Association of a common AGO1 variant with lung cancer risk: a two-stage case-control study. Mol Carcinog 2010;49:913-21.
35. Koesters R, Adams V, Betts D, et al. Human eukaryotic initiation factor EIF2C1 gene: cDNA sequence, genomic organization, localization to chromosomal bands 1p34-p35, and expression. Genomics 1999;61:210-8.
36. Rotunno M, Zhao Y, Bergen AW, et al. Inherited polymorphisms in the RNA-mediated interference machinery afect microRNA expression and lung cancer survival. Br J Cancer 2010;103:1870-4.
37. Zhang X, Cairns M, Rose B, et al. Alterations in miRNA processing and expression in pleomorphic adenomas of the salivary gland. Int J Cancer 2009;124:2855-63.
38. Kumar MS, Lu J, Mercer KL, Golub TR, Jacks T. Impaired microRNA processing enhances cellular transformation and tumorigenesis. Nat Genet 2007;39:673-7.
39. Sung H, Lee KM, Choi JY, et al. Common genetic polymorphisms of microRNA biogenesis pathway genes and risk of breast cancer: a case-control study in Korea. Breast Cancer Res Treat 2011;130:939-51.
40. Sambrook J, Russell DW. Preparation and Analysis of Eukaryotic Genomic DNA. Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor, USA: CSHL Press, 2001:4-12.