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Volumn 15, Issue 5, 2014, Pages 8428-8442

Access of hydrogen-radicals to the peptide-backbone as a measure for estimating the flexibility of proteins using matrix-assisted laser desorption/ionization mass spectrometry

Author keywords

Flexibility; Hydrogen radical; In source decay; MALDI MS (matrix assisted laser desorption ionization mass spectrometry); Proteins

Indexed keywords

AMINO ACID; BOVINE SERUM ALBUMIN; HYDROGEN; MYOGLOBIN; THIOREDOXIN; FREE RADICAL; PEPTIDE;

EID: 84900518069     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms15058428     Document Type: Article
Times cited : (8)

References (28)
  • 2
    • 84984042980 scopus 로고
    • Protein and polymer analyses up to m/z 100,000 by laser ionization time-of-flight mass spectrometry
    • Tanaka, K.; Waki, H.; Ido, Y.; Akita, S.; Yoshida, Y.; Yoshida, T. Protein and polymer analyses up to m/z 100,000 by laser ionization time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 1988, 2, 151-153.
    • (1988) Rapid Commun. Mass Spectrom. , vol.2 , pp. 151-153
    • Tanaka, K.1    Waki, H.2    Ido, Y.3    Akita, S.4    Yoshida, Y.5    Yoshida, T.6
  • 3
    • 0022029557 scopus 로고
    • Electrospray interface for liquid chromatographs and mass spectrometers
    • Whitehouse, C.M.; Dreyer, R.N.; Yamashita, M.; Fenn, J.B. Electrospray interface for liquid chromatographs and mass spectrometers. Anal. Chem. 1985, 57, 675-679.
    • (1985) Anal. Chem. , vol.57 , pp. 675-679
    • Whitehouse, C.M.1    Dreyer, R.N.2    Yamashita, M.3    Fenn, J.B.4
  • 4
    • 0024438708 scopus 로고
    • Electrospray ionization for mass spectrometry of large biomolecules
    • Fenn, J.B.; Mann; M., Meng, C.K.; Wong, S.F.; Whitehouse, C.M. Electrospray ionization for mass spectrometry of large biomolecules. Science 1989, 246, 64-71.
    • (1989) Science , vol.246 , pp. 64-71
    • Fenn, J.B.1    Mann, M.2    Meng, C.K.3    Wong, S.F.4    Whitehouse, C.M.5
  • 5
    • 82555168066 scopus 로고    scopus 로고
    • Spatially resolved protein hydrogen exchange measured by matrix-assisted laser desorption ionization in-source decay
    • Rand, K.D.; Bache, N.; Nedertoft, M.M.; Jorgensen, J.D. Spatially resolved protein hydrogen exchange measured by matrix-assisted laser desorption ionization in-source decay. Anal. Chem. 2011, 83, 8859-8862.
    • (2011) Anal. Chem. , vol.83 , pp. 8859-8862
    • Rand, K.D.1    Bache, N.2    Nedertoft, M.M.3    Jorgensen, J.D.4
  • 6
    • 84892652608 scopus 로고    scopus 로고
    • Flexible Xxx-Asp/Asn and Gly-Xxx residues of equine cytochrome c in matrix-assisted laser desorption/ionization in-source decay mass spectrometry
    • doi:10.5702/massspectrometry.A0007
    • Takayama. M. Flexible Xxx-Asp/Asn and Gly-Xxx residues of equine cytochrome c in matrix-assisted laser desorption/ionization in-source decay mass spectrometry. Mass Spectrom. 2012, doi:10.5702/massspectrometry.A0007.
    • (2012) Mass Spectrom.
    • Takayama, M.1
  • 7
    • 78049502162 scopus 로고    scopus 로고
    • Real-time hydrogen/deuterium exchange kinetics via supercharged electrospray ionization tandem mass spectrometry
    • Sterling, H.J.; Williams, E.R. Real-time hydrogen/deuterium exchange kinetics via supercharged electrospray ionization tandem mass spectrometry. Anal. Chem. 2010, 82, 9050-9057.
    • (2010) Anal. Chem. , vol.82 , pp. 9050-9057
    • Sterling, H.J.1    Williams, E.R.2
  • 8
  • 9
    • 0021918946 scopus 로고
    • Prediction of chain flexibility in proteins
    • Karplus, P.A.; Schulz, G.E. Prediction of chain flexibility in proteins. Naturwissenschaften 1985, 72, 212-213.
    • (1985) Naturwissenschaften , vol.72 , pp. 212-213
    • Karplus, P.A.1    Schulz, G.E.2
  • 11
    • 0018476871 scopus 로고
    • Prediction of β-turns
    • Chow, P.Y.; Fasman, G.D. Prediction of β-turns. Biophys. J. 1979, 26, 367-384.
    • (1979) Biophys. J. , vol.26 , pp. 367-384
    • Chow, P.Y.1    Fasman, G.D.2
  • 13
    • 1442355435 scopus 로고    scopus 로고
    • Quantitation of rapid proton-deuteron amide exchange using hadamsrd spectroscopy
    • Bougault, C.; Feng, L.; Glushka, J.; Kupce, E.; Prestegard, J.H. Quantitation of rapid proton-deuteron amide exchange using hadamsrd spectroscopy. J. Biomol. NMR 2004, 28, 385-390.
    • (2004) J. Biomol. NMR , vol.28 , pp. 385-390
    • Bougault, C.1    Feng, L.2    Glushka, J.3    Kupce, E.4    Prestegard, J.H.5
  • 14
    • 0038319135 scopus 로고    scopus 로고
    • A conformational flexibility scale for amino acids in proteins
    • Huang, F.; Nau, W.M. A conformational flexibility scale for amino acids in proteins. Angew. Chem. Int. Ed. 2003, 42, 2269-2272.
    • (2003) Angew. Chem. Int. Ed. , vol.42 , pp. 2269-2272
    • Huang, F.1    Nau, W.M.2
  • 16
    • 0031912073 scopus 로고    scopus 로고
    • Determinations of protein hydrogen exchange studied in equine cytochrome c
    • Milne, J.S.; Mayne, L.; Roder, H.; Wand, A.J.; Englander, S.W. Determinations of protein hydrogen exchange studied in equine cytochrome c. Protein Sci. 1998, 7, 739-745.
    • (1998) Protein Sci. , vol.7 , pp. 739-745
    • Milne, J.S.1    Mayne, L.2    Roder, H.3    Wand, A.J.4    Englander, S.W.5
  • 17
    • 84900488088 scopus 로고    scopus 로고
    • Analysis of flexibility of proteins by means of positive and negative ion MALDI in-Source decay mass spectrometry
    • doi:10.5702/massspectrometry.S0023
    • Iimuro, R.; Takayama, M. Analysis of flexibility of proteins by means of positive and negative ion MALDI in-Source decay mass spectrometry. Mass Spectrom. 2014, doi:10.5702/massspectrometry.S0023.
    • (2014) Mass Spectrom.
    • Iimuro, R.1    Takayama, M.2
  • 18
    • 84892638853 scopus 로고    scopus 로고
    • Selective and nonselective cleavages in positive and negative CID of the fragments generated from in-source decay of intact proteins in MALDI-MS
    • Takayama, M.; Sekiya, S.; Iimuro, R.; Iwamoto, S.; Tanaka, K. Selective and nonselective cleavages in positive and negative CID of the fragments generated from in-source decay of intact proteins in MALDI-MS. J. Am. Soc. Mass Spectrom. 2014, 25, 120-131.
    • (2014) J. Am. Soc. Mass Spectrom. , vol.25 , pp. 120-131
    • Takayama, M.1    Sekiya, S.2    Iimuro, R.3    Iwamoto, S.4    Tanaka, K.5
  • 19
    • 36448947243 scopus 로고    scopus 로고
    • Rational selection of the optimum MALDI matrix for top-down proteomics by in-source decay
    • Demeure, K.; Quinton, L.; Gabelica, V.; de Pauw, E. Rational selection of the optimum MALDI matrix for top-down proteomics by in-source decay. Anal. Chem. 2008, 79, 8678-8685.
    • (2008) Anal. Chem. , vol.79 , pp. 8678-8685
    • Demeure, K.1    Quinton, L.2    Gabelica, V.3    de Pauw, E.4
  • 20
    • 0035563598 scopus 로고    scopus 로고
    • N-Cα bond cleavage of the peptide backbone via hydrogen abstraction
    • Takayama, M. N-Cα bond cleavage of the peptide backbone via hydrogen abstraction. J. Am. Soc. Mass Spectrom. 2001, 12, 1044-1049.
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 1044-1049
    • Takayama, M.1
  • 21
    • 11844304974 scopus 로고    scopus 로고
    • Fragmentation of peptides in MALDI in-source decay mediated by hydrogen radicals
    • Kocher, T.; Engstrom, A.; Zubarev, R.A. Fragmentation of peptides in MALDI in-source decay mediated by hydrogen radicals. Anal. Chem. 2005, 77, 172-177.
    • (2005) Anal. Chem. , vol.77 , pp. 172-177
    • Kocher, T.1    Engstrom, A.2    Zubarev, R.A.3
  • 22
    • 34548014772 scopus 로고    scopus 로고
    • Protein sequence information by matrix-assisted laser desorption/ionization in-source decay mass spectrometry
    • Hardouin, J. Protein sequence information by matrix-assisted laser desorption/ionization in-source decay mass spectrometry. Mass Spectrom. Rev. 2007, 26, 672-682.
    • (2007) Mass Spectrom. Rev. , vol.26 , pp. 672-682
    • Hardouin, J.1
  • 23
    • 84871336902 scopus 로고    scopus 로고
    • Influence of secondary structure on in-source decay of protein inn matrix-assisted laser desorption/ionization mass spectrometry
    • doi:105702/massspectrometry.A0001
    • Takayama, M.; Osaka, I.; Sakakura, M. Influence of secondary structure on in-source decay of protein inn matrix-assisted laser desorption/ionization mass spectrometry. Mass Spectrom. 2012, doi:105702/massspectrometry.A0001.
    • (2012) Mass Spectrom.
    • Takayama, M.1    Osaka, I.2    Sakakura, M.3
  • 24
    • 84871343836 scopus 로고    scopus 로고
    • 5-Amino-1-naphthol, a novel 1,5-naphthalene derivative matrix suitable for matrix-assisted laser desorption/ionization in-source decay of phosphorylated peptides
    • Osaka, I.; Sakai, M.; Takayama, M. 5-Amino-1-naphthol, a novel 1,5-naphthalene derivative matrix suitable for matrix-assisted laser desorption/ionization in-source decay of phosphorylated peptides. Rapid Commun. Mass Spectrom. 2013, 27, 103-108.
    • (2013) Rapid Commun. Mass Spectrom. , vol.27 , pp. 103-108
    • Osaka, I.1    Sakai, M.2    Takayama, M.3
  • 25
    • 0006200079 scopus 로고    scopus 로고
    • Does in-source decay occur independent of the ionization process in matrix-assisted laser desorption?
    • Takayama, M.; Tsugita, A. Does in-source decay occur independent of the ionization process in matrix-assisted laser desorption? Int. J. Mass Spectrom. 1998, 181, L1-L6.
    • (1998) Int. J. Mass Spectrom. , vol.181
    • Takayama, M.1    Tsugita, A.2
  • 26
    • 77958159767 scopus 로고    scopus 로고
    • New advances in the understanding of the in-source decay in MALDI-TOF-MS
    • 1906-1191
    • Demeure, K.; Gabelica, V.; de Pauw, E. New advances in the understanding of the in-source decay in MALDI-TOF-MS. J. Am. Soc. Mass Spectrom. 2010, 21, 1906-1191.
    • (2010) J. Am. Soc. Mass Spectrom. , vol.21
    • Demeure, K.1    Gabelica, V.2    de Pauw, E.3
  • 27
    • 35148887616 scopus 로고    scopus 로고
    • Study of factors governing negative molecular ion yields of amino acid and peptide in FAB, MALDI and ESI mass spectrometry
    • Nishikaze, T.; Takayama, M. Study of factors governing negative molecular ion yields of amino acid and peptide in FAB, MALDI and ESI mass spectrometry. Int. J. Mass Spectrom. 2007, 268, 47-59.
    • (2007) Int. J. Mass Spectrom. , vol.268 , pp. 47-59
    • Nishikaze, T.1    Takayama, M.2


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