A model for the generation and transmission of variations in evolution

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 19, 2014, Pages

  Rivoirea, Olivier ^a,b   Leibler, Stanislas ^c,d  

^a UNIV GRENOBLE ALPES   (France)

^b CNRS   (France)

^c ROCKEFELLER UNIVERSITY   (United States)

^d INSTITUTE FOR ADVANCED STUDY   (United States)

Author keywords

Acquired characteristics; Darwinian evolution; Epigenetics; Heredity; Lamarckism

Indexed keywords

ADAPTATION; ARTICLE; CHROMOSOME; DNA METHYLATION; ENTROPY; ENVIRONMENTAL CHANGE; ENVIRONMENTAL PARAMETERS; EVOLUTION; GAMETE; GENETIC LOAD; GENETIC VARIABILITY; GENOTYPE; GERMPLASM; GROWTH RATE; HERITABILITY; HISTONE MODIFICATION; INHERITANCE; MATHEMATICAL MODEL; MUTATION RATE; NATURAL SELECTION; NONHUMAN; PHENOTYPE; PHENOTYPIC PLASTICITY; PHENOTYPIC VARIATION; POPULATION DYNAMICS; POPULATION GENETICS; POPULATION SIZE; PRIMORDIAL GERM CELL; PRIORITY JOURNAL; PROGENY; QUANTITATIVE GENETICS; REPRODUCTION; SIGNAL PROCESSING; SIGNAL TRANSDUCTION; STATISTICS; SURVIVAL; VARIANCE; X CHROMOSOME;

ACQUIRED CHARACTERISTICS; DARWINIAN EVOLUTION; EPIGENETICS; HEREDITY; LAMARCKISM;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; BIOLOGICAL EVOLUTION; EPIGENOMICS; GENETIC VARIATION; GENOTYPE; HUMANS; MODELS, GENETIC; PHENOTYPE; SELECTION, GENETIC;

EID: 84900506575     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1323901111     Document Type: Article

References (51)

1. Darwin C (1859) On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life (John Murray, London).
2. Darwin C (1868) The Variation of Animals and Plants under Domestication (John Murray, London).
3. Weismann A (1893) The Germ-Plasm. A Theory of Heredity (Charles Scribner's Sons, New York).
4. Romanes GJ (1895) Darwin, and After Darwin. II. Post-Darwinian Questions: Heredity and Utility (The Open Court Publishing Company, Chicago).
5. Huxley J (1942) Evolution: The Modern Synthesis (Allen and Unwin, London).
6. Luria SE, Delbrück M (1943) Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28(6):491-511.
7. Lederberg J (1959) Genes and antibodies. Science 129(3364):1649-1653.
8. Monod J (1966) From enzymatic adaptation to allosteric transitions. Science 154(3748): 475-483.
9. Crick F (1970) Central dogma of molecular biology. Nature 227(5258):561-563.
10. Baldwin J (1896) A new factor in evolution. Am Nat 30:441-451.
11. Morgan CL (1896) On modification and variation. Science 4(99):733-740.
12. Osborn HF (1896) Ontogenic and phylogenic variation. Science 4(100):786-789.
13. Waddington CH (1942) Canalization of development and the inheritance of acquired characters. Nature 150:563-565.
14. Soyfer VN (1994) Lysenko andthe Tragedy of Soviet Science (Rutgers Univ Press, New Brunswick, NJ).
15. Bonduriansky R (2012) Rethinking heredity, again. Trends Ecol Evol 27(6):330-336.
16. Jablonka E, Lamb ML (2005) Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life (The MIT Press, Cambridge, MA).
17. Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27:379.
18. Sabour D, Schöler HR (2012) Reprogramming and the mammalian germline: The Weismann barrier revisited. Curr Opin Cell Biol 24(6):716-723.
19. West-Eberhard MJ (2003) Developmental Plasticity and Evolution (Oxford Univ Press, New York).
20. Jablonka E, Lamb MJ, Avital E (1998) "Lamarckian" mechanisms in darwinian evolution. Trends Ecol Evol 13(5):206-210.
21. Fisher RA (1930) The Genetical Theory of Natural Selection (Clarendon, Oxford).
22. Maybeck PS (1979) Stochastic Models, Estimation and Control (Academic, New York).
23. Rivoire O, Leibler S (2011) The value of information for populations in varying environments. J Stat Phys 142:1-43.
24. Kalman R (1960) A new approach to linear filtering and prediction problems. J Basic Eng 82:35-45.
25. Tuljapurkar S (1990) Population Dynamics in Variable Environments (Springer, Berlin).
26. Lynch M, Walsh B (1998) Genetics and Analysis of Quantitative Traits (Sinauer, Sunderland, MA).
27. Kimura M (1967) On the evolutionary adjustment of spontaneous mutation rates. Genet Res 9:23-34.
28. Leigh EG, Jr. (1973) The evolution of mutation rates. Genetics 73(Suppl 73):1-18.
29. Gillespie JH (1981) Mutation modification in a random environment. Evolution 35:468-476.
30. Ishii K, Matsuda H, Iwasa Y, Sasaki A (1989) Evolutionarily stable mutation rate in a periodically changing environment. Genetics 121(1):163-174.
31. Sniegowski PD, Gerrish PJ, Johnson T, Shaver A (2000) The evolution of mutation rates: Separating causes from consequences. Bioessays 22(12):1057-1066.
32. Cohen JE (1980) Convexity properties of products of random nonnegative matrices. Proc Natl Acad Sci USA 77(7):3749-3752.
33. Paul S, Million-Weaver S, Chattopadhyay S, Sokurenko E, Merrikh H (2013) Accelerated gene evolution through replication-transcription conflicts. Nature 495(7442):512-515.
34. Spudich JL, Koshland DE, Jr. (1976) Non-genetic individuality: Chance in the single cell. Nature 262(5568):467-471.
35. Eldar A, Elowitz MB (2010) Functional roles for noise in genetic circuits. Nature 467(7312):167-173.
36. Whitham TG, Slobodchikoff CN (1981) Evolution by individuals, plant-herbivore interactions, and mosaics of genetic variability: The adaptive significance of somatic mutations in plants. Oecologia 49:287-292.
37. Barrangou R, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709-1712.
38. Koonin EV, Wolf YI (2009) Is evolution Darwinian or/and Lamarckian? Biol Direct 4:42.
39. Helanterä H, Uller T (2010) The Price equation and extended inheritance. Philos Theor Biol 2:e101.
40. Day T, Bonduriansky R (2011) A unified approach to the evolutionary consequences of genetic and nongenetic inheritance. Am Nat 178(2):E18-E36.
41. Price GR (1970) Selection and covariance. Nature 227(5257):520-521.
42. Price GR (1972) Extension of covariance selection mathematics. Ann Hum Genet 35(4): 485-490.
43. Cover TM, Thomas JA (1991) Elements of Information Theory (Wiley, New York).
44. Kelly JL (1956) A new interpretation of information rate. Information Theory 2: 185-189.
45. Haccou P, Iwasa Y (1995) Optimal mixed strategies in stochastic environments. Theor Popul Biol 47:212-243.
46. Simon D (2006) Optimal State Estimation: Kalman, H Infinity, and Nonlinear Approaches (Wiley-Interscience, Hoboken, NJ).
47. Kirkpatrick M, Lande R (1989) The evolution of maternal characters. Evolution 43: 485-503.
48. Lachmann M, Jablonka E (1996) The inheritance of phenotypes: An adaptation to fluctuating environments. J Theor Biol 181(1):1-9.
49. Pal C (1998) Plasticity, memory and the adaptive landscape of the genotype. Proc Biol Sci 265:1319.
50. Pavlicev M, Cheverud JM, Wagner GP (2011) Evolution of adaptive phenotypic variation patterns by direct selection for evolvability. Proc Biol Sci 278(1713):1903-1912.
51. Chevin L-M, Lande R, Mace GM (2010) Adaptation, plasticity, and extinction in a changing environment: Towards a predictive theory. PLoS Biol 8(4):e1000357.