-
1
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
10.1126/science.1110591 15831718
-
Diversity of the human intestinal microbial flora. Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA, Science 2005 308 5728 1635 1638 10.1126/science.1110591 15831718
-
(2005)
Science
, vol.308
, Issue.5728
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
2
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
10.1038/nature08821 20203603
-
A human gut microbial gene catalogue established by metagenomic sequencing. Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, et al. Nature 2010 464 7285 59 65 10.1038/nature08821 20203603
-
(2010)
Nature
, vol.464
, Issue.7285
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
more..
-
3
-
-
84862286169
-
A framework for human microbiome research
-
Human Microbiome Project 10.1038/nature11209 22699610
-
A framework for human microbiome research. Human Microbiome Project, Nature 2012 486 7402 215 221 10.1038/nature11209 22699610
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 215-221
-
-
-
4
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
10.1136/gut.2005.073817 16188921
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Manichanh C, Rigottier-Gois L, Bonnaud E, Gloux K, Pelletier E, Frangeul L, Nalin R, Jarrin C, Chardon P, Marteau P, Roca J, Dore J, Gut 2006 55 2 205 211 10.1136/gut.2005.073817 16188921
-
(2006)
Gut
, vol.55
, Issue.2
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
Gloux, K.4
Pelletier, E.5
Frangeul, L.6
Nalin, R.7
Jarrin, C.8
Chardon, P.9
Marteau, P.10
Roca, J.11
Dore, J.12
-
5
-
-
84888191132
-
The human microbiome and probiotics: Implications for pediatrics
-
The human microbiome and probiotics: implications for pediatrics. Versalovic J, Ann Nutr Metab 2013 63 Suppl 2 42 52
-
(2013)
Ann Nutr Metab
, vol.63
, Issue.SUPPL. 2
, pp. 42-52
-
-
Versalovic, J.1
-
6
-
-
84861578319
-
An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota
-
10.1136/gutjnl-2011-301501 22180058
-
An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota. Jeffery IB, O'Toole PW, Ohman L, Claesson MJ, Deane J, Quigley EM, Simren M, Gut 2012 61 7 997 1006 10.1136/gutjnl-2011-301501 22180058
-
(2012)
Gut
, vol.61
, Issue.7
, pp. 997-1006
-
-
Jeffery, I.B.1
O'Toole, P.W.2
Ohman, L.3
Claesson, M.J.4
Deane, J.5
Quigley, E.M.6
Simren, M.7
-
7
-
-
84893741669
-
Anal gas evacuation and colonic microbiota in patients with flatulence: Effect of diet
-
23766444
-
Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet. Manichanh C, Eck A, Varela E, Roca J, Clemente JC, Gonzalez A, Knights D, Knight R, Estrella S, Hernandez C, Guyonnet D, Accarino A, Santos J, Malagelada JR, Guarner F, Azpiroz F, Gut 2013 63 3 401 408 23766444
-
(2013)
Gut
, vol.63
, Issue.3
, pp. 401-408
-
-
Manichanh, C.1
Eck, A.2
Varela, E.3
Roca, J.4
Clemente, J.C.5
Gonzalez, A.6
Knights, D.7
Knight, R.8
Estrella, S.9
Hernandez, C.10
Guyonnet, D.11
Accarino, A.12
Santos, J.13
Malagelada, J.R.14
Guarner, F.15
Azpiroz, F.16
-
8
-
-
0030868530
-
Stool form scale as a useful guide to intestinal transit time
-
10.3109/00365529709011203 9299672
-
Stool form scale as a useful guide to intestinal transit time. Lewis SJ, Heaton KW, Scand J Gastroenterol 1997 32 9 920 924 10.3109/00365529709011203 9299672
-
(1997)
Scand J Gastroenterol
, vol.32
, Issue.9
, pp. 920-924
-
-
Lewis, S.J.1
Heaton, K.W.2
-
9
-
-
0034976949
-
Faecal elastase-1: Lyophilization of stool samples prevents false low results in diarrhoea
-
10.1080/003655201300192058 11444478
-
Faecal elastase-1: lyophilization of stool samples prevents false low results in diarrhoea. Fischer B, Hoh S, Wehler M, Hahn EG, Schneider HT, Scand J Gastroenterol 2001 36 7 771 774 10.1080/003655201300192058 11444478
-
(2001)
Scand J Gastroenterol
, vol.36
, Issue.7
, pp. 771-774
-
-
Fischer, B.1
Hoh, S.2
Wehler, M.3
Hahn, E.G.4
Schneider, H.T.5
-
10
-
-
33646201684
-
Functional bowel disorders
-
10.1053/j.gastro.2005.11.061 16678561
-
Functional bowel disorders. Longstreth GF, Thompson WG, Chey WD, Houghton LA, Mearin F, Spiller RC, Gastroenterology 2006 130 5 1480 1491 10.1053/j.gastro.2005.11.061 16678561
-
(2006)
Gastroenterology
, vol.130
, Issue.5
, pp. 1480-1491
-
-
Longstreth, G.F.1
Thompson, W.G.2
Chey, W.D.3
Houghton, L.A.4
Mearin, F.5
Spiller, R.C.6
-
11
-
-
80052812922
-
New molecular insights into inflammatory bowel disease-induced diarrhoea
-
10.1586/egh.11.64 21910579
-
New molecular insights into inflammatory bowel disease-induced diarrhoea. Tang Y, Forsyth CB, Keshavarzian A, Expert Rev Gastroenterol Hepatol 2011 5 5 615 625 10.1586/egh.11.64 21910579
-
(2011)
Expert Rev Gastroenterol Hepatol
, vol.5
, Issue.5
, pp. 615-625
-
-
Tang, Y.1
Forsyth, C.B.2
Keshavarzian, A.3
-
12
-
-
0029045220
-
Determinants of decreased fecal consistency in patients with diarrhoea
-
10.1016/0016-5085(95)90134-5 7768377
-
Determinants of decreased fecal consistency in patients with diarrhoea. Wenzl HH, Fine KD, Schiller LR, Fordtran JS, Gastroenterology 1995 108 6 1729 1738 10.1016/0016-5085(95)90134-5 7768377
-
(1995)
Gastroenterology
, vol.108
, Issue.6
, pp. 1729-1738
-
-
Wenzl, H.H.1
Fine, K.D.2
Schiller, L.R.3
Fordtran, J.S.4
-
14
-
-
84864344549
-
Storage conditions of intestinal microbiota matter in metagenomic analysis
-
10.1186/1471-2180-12-158 22846661
-
Storage conditions of intestinal microbiota matter in metagenomic analysis. Cardona S, Eck A, Cassellas M, Gallart M, Alastrue C, Dore J, Azpiroz F, Roca J, Guarner F, Manichanh C, BMC Microbiol 2012 12 158 10.1186/1471-2180-12-158 22846661
-
(2012)
BMC Microbiol
, vol.12
, pp. 158
-
-
Cardona, S.1
Eck, A.2
Cassellas, M.3
Gallart, M.4
Alastrue, C.5
Dore, J.6
Azpiroz, F.7
Roca, J.8
Guarner, F.9
Manichanh, C.10
-
15
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
9212428
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Godon JJ, Zumstein E, Dabert P, Habouzit F, Moletta R, Appl Environ Microbiol 1997 63 7 2802 2813 9212428
-
(1997)
Appl Environ Microbiol
, vol.63
, Issue.7
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
16
-
-
79954506754
-
PrimerProspector: De novo design and taxonomic analysis of barcoded polymerase chain reaction primers
-
10.1093/bioinformatics/btr087 21349862
-
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R, Bioinformatics 2011 27 8 1159 1161 10.1093/bioinformatics/btr087 21349862
-
(2011)
Bioinformatics
, vol.27
, Issue.8
, pp. 1159-1161
-
-
Walters, W.A.1
Caporaso, J.G.2
Lauber, C.L.3
Berg-Lyons, D.4
Fierer, N.5
Knight, R.6
-
17
-
-
0027509645
-
Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis
-
8428640
-
Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis. Wilmotte A, Van der Auwera G, De Wachter R, FEBS Lett 1993 317 1-2 96 100 8428640
-
(1993)
FEBS Lett
, vol.317
, Issue.1-2
, pp. 96-100
-
-
Wilmotte, A.1
Van Der Auwera, G.2
De Wachter, R.3
-
18
-
-
33750077286
-
Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota
-
10.1128/AEM.00378-06 17021222
-
Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota. Dalby AB, Frank DN, St Amand AL, Bendele AM, Pace NR, Appl Environ Microbiol 2006 72 10 6707 6715 10.1128/AEM.00378-06 17021222
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.10
, pp. 6707-6715
-
-
Dalby, A.B.1
Frank, D.N.2
St Amand, A.L.3
Bendele, A.M.4
Pace, N.R.5
-
19
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
10.1038/nmeth.f.303 20383131
-
QIIME allows analysis of high-throughput community sequencing data. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R, Nat Methods 2010 7 5 335 336 10.1038/nmeth.f.303 20383131
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
20
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
10.1128/AEM.03006-05 16820507
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL, Appl Environ Microbiol 2006 72 7 5069 5072 10.1128/AEM.03006-05 16820507
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.7
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
21
-
-
84857122937
-
An improved greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
10.1038/ismej.2011.139 22134646
-
An improved greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P, ISME J 2012 6 3 610 618 10.1038/ismej.2011.139 22134646
-
(2012)
ISME J
, vol.6
, Issue.3
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
Desantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
22
-
-
0025183708
-
Basic local alignment search tool
-
10.1016/S0022-2836(05)80360-2 2231712
-
Basic local alignment search tool. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, J Mol Biol 1990 215 3 403 410 10.1016/S0022-2836(05)80360-2 2231712
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
23
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
10.1371/journal.pone.0009490 20224823
-
FastTree 2-approximately maximum-likelihood trees for large alignments. Price MN, Dehal PS, Arkin AP, PLoS One 2010 5 3 9490 10.1371/journal.pone. 0009490 20224823
-
(2010)
PLoS One
, vol.5
, Issue.3
, pp. 59490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
24
-
-
33748713890
-
UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
-
10.1186/1471-2105-7-371
-
UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. Lozupone C, Hamady M, Knight R, BMC Bioinforma 2006 7 371 10.1186/1471-2105-7-371
-
(2006)
BMC Bioinforma
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
|