The structure of a class 3 nonsymbiotic plant haemoglobin from Arabidopsis thaliana reveals a novel N-terminal helical extension

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 5, 2014, Pages 1411-1418

  Reeder, Brandon J ^a   Hough, Michael A ^a  

^a UNIVERSITY OF ESSEX   (United Kingdom)

Author keywords

Arabidopsis thaliana; haemoglobin

Indexed keywords

ARABIDOPSIS PROTEIN; HEME; HEMOGLOBIN; HISTIDINE; LIGAND;

BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CIRCULAR DICHROISM; HYDROGEN BOND; METABOLISM; PROTEIN CONFORMATION; PROTEIN MULTIMERIZATION; X RAY CRYSTALLOGRAPHY;

ARABIDOPSIS PROTEINS; BINDING SITES; CIRCULAR DICHROISM; CRYSTALLOGRAPHY, X-RAY; HEME; HEMOGLOBINS; HISTIDINE; HYDROGEN BONDING; LIGANDS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN MULTIMERIZATION;

EID: 84900404935     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004714004878     Document Type: Article

References (39)

1. Abbruzzetti, S., Faggiano, S., Bruno, S., Spyrakis, F., Mozzarelli, A., Dewilde, S., Moens, L. & Viappiani, C. (2009). Proc. Natl Acad. Sci. USA, 106, 18984-18989.
2. Antonini, E. & Brunori, M. (1971). Frontiers in Biology, edited by A. Neuberger & E. L. Tatum, pp. 13-52. Amsterdam: North-Holland.
3. Battye, T. G. G., Kontogiannis, L., Johnson, O., Powell, H. R. & Leslie, A. G. W. (2011). Acta Cryst. D67, 271-281.
4. Bonamore, A., Ilari, A., Giangiacomo, L., Bellelli, A., Morea, V. & Boffi, A. (2005). FEBS J. 272, 4189-4201.
5. Bruno, S., Faggiano, S., Spyrakis, F., Mozzarelli, A., Abbruzzetti, S., Grandi, E., Viappiani, C., Feis, A., Mackowiak, S., Smulevich, G., Cacciatori, E. & Dominici, P. (2007). J. Am. Chem. Soc. 129, 2880-2889.
6. Brunori, M., Amiconi, G., Antonin, E., Wyman, J., Zito, R. & Fanelli, A. R. (1968). Biochim. Biophys. Acta, 154, 315-322.
7. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
8. Cowtan, K. (2006). Acta Cryst. D62, 1002-1011.
9. Daigle, R., Rousseau, J. A., Guertin, M. & Lagü e, P. (2009). Biophys. J. 97, 2967-2977.
10. Dalziel, K. & O'Brien, J. R. (1957). Biochem. J. 67, 119-124.
11. Dordas, C., Rivoal, J. & Hill, R. D. (2003). Ann. Bot. 91, 173-178.
12. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
13. Evans, P. (2006). Acta Cryst. D62, 72-82.
14. Garrocho-Villegas, V., Gopalasubramaniam, S. K. & Arredondo-Peter, R. (2007). Gene, 398, 78-85.
15. Giangiacomo, L., Ilari, A., Boffi, A., Morea, V. & Chiancone, E. (2005). J. Biol. Chem. 280, 9192-9202.
16. Hamdane, D., Kiger, L., Dewilde, S., Uzan, J., Burmester, T., Hankeln, T., Moens, L. & Marden, M. C. (2005). FEBS J. 272, 2076-2084.
17. Hill, R. D. (2012). AoB Plants, 2012, pls004.
18. Hunt, P. W., Watts, R. A., Trevaskis, B., Llewelyn, D. J., Burnell, J., Dennis, E. S. & Peacock, W. J. (2001). Plant Mol. Biol. 47, 677-692.
19. Kendrew, J. C., Dickerson, R. E., Strandberg, B. E., Hart, R. G., Davies, D. R., Phillips, D. C. & Shore, V. C. (1960). Nature (London), 185, 422-427.
20. Krissinel, E. & Henrick, K. (2004). Acta Cryst. D60, 2256-2268.
21. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J. & Higgins, D. G. (2007). Bioinformatics, 23, 2947-2948.
22. Lechauve, C., Chauvierre, C., Dewilde, S., Moens, L., Green, B. N., Marden, M. C., Cé lier, C. & Kiger, L. (2010). FEBS J. 277, 2696-2704.
23. Murshudov, G. N., Skubá k, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
24. Perazzolli, M., Dominici, P., Romero-Puertas, M. C., Zago, E., Zeier, J., Sonoda, M., Lamb, C. & Delledonne, M. (2004). Plant Cell, 16, 2785-2794.
25. Perutz, M. F. (1960). Brookhaven Symp. Biol. 13, 165-183.
26. Pesce, A., Couture, M., Dewilde, S., Guertin, M., Yamauchi, K., Ascenzi, P., Moens, L. & Bolognesi, M. (2000). EMBO J. 19, 2424-2434.
27. Pesce, A., Dewilde, S., Nardini, M., Moens, L., Ascenzi, P., Hankeln, T., Burmester, T. & Bolognesi, M. (2004). Micron, 35, 63-65.
28. Pesce, A., Nardini, M., Milani, M. & Bolognesi, M. (2007). IUBMB Life, 59, 535-541.
29. Reeder, B. J., Cutruzzola, F., Bigotti, M. G., Watmough, N. J. & Wilson, M. T. (2007). IUBMB Life, 59, 477-489.
30. Rifkind, J. M., Abugo, O., Levy, A. & Heim, J. (1994). Methods Enzymol. 231, 449-480.
31. Sanctis, D. de, Dewilde, S., Pesce, A., Moens, L., Ascenzi, P., Hankeln, T., Burmester, T. & Bolognesi, M. (2004). J. Mol. Biol. 336, 917-927.
32. Scheler, W. & Fischbach, I. (1958). Acta Biol. Med. Ger. 1, 194-210.
33. Smagghe, B. J., Hoy, J. A., Percifield, R., Kundu, S., Hargrove, M. S., Sarath, G., Hilbert, J. L., Watts, R. A., Dennis, E. S., Peacock, W. J., Dewilde, S., Moens, L., Blouin, G. C., Olson, J. S. & Appleby, C. A. (2009). Biopolymers, 91, 1083-1096.
34. Spyrakis, F., Lucas, F., Bidon-Chanal, A., Viappiani, C., Guallar, V. & Luque, F. J. (2013). Biochim. Biophys. Acta, 1834, 1957-1967.
35. Sugawara, Y., Kadono, E., Suzuki, A., Yukuta, Y., Shibasaki, Y., Nishimura, N., Kameyama, Y., Hirota, M., Ishida, C., Higuchi, N., Haramoto, K., Sakai, Y. & Soda, H. (2003). Acta Physiol. Scand. 179, 49-59.
36. Svistunenko, D. A., Reeder, B. J., Wankasi, M. M., Silaghi-Dumitrescu, R. L., Cooper, C. E., Rinaldo, S., Cutruzzolà, F. & Wilson, M. T. (2007). Dalton Trans., pp. 840-850.
37. Thiel, J., Rolletschek, H., Friedel, S., Lunn, J. E., Nguyen, T. H., Feil, R., Tschiersch, H., Mü ller, M. & Borisjuk, L. (2011). BMC Plant Biol. 11, 48.
38. Watts, R. A., Hunt, P. W., Hvitved, A. N., Hargrove, M. S., Peacock, W. J. & Dennis, E. S. (2001). Proc. Natl Acad. Sci. USA, 98, 10119-10124.
39. Yang, L.-X., Wang, R.-Y., Ren, F., Liu, J., Cheng, J. & Lu, Y.-T. (2005). Plant Cell Physiol. 46, 1309-1316.