-
1
-
-
65649083411
-
Estimating accuracy of RNA-Seq and microarrays with proteomics
-
10.1186/1471-2164-10-161 19371429
-
Estimating accuracy of RNA-Seq and microarrays with proteomics. Fu X, Fu N, Guo S, Yan Z, Xu Y, Hu H, Menzel C, Chen W, Li Y, Zeng R, Khaitovich P, BMC genomics 2009 10 161 10.1186/1471-2164-10-161 19371429
-
(2009)
BMC Genomics
, vol.10
, pp. 161
-
-
Fu, X.1
Fu, N.2
Guo, S.3
Yan, Z.4
Xu, Y.5
Hu, H.6
Menzel, C.7
Chen, W.8
Li, Y.9
Zeng, R.10
Khaitovich, P.11
-
2
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
10.1038/nrg2484 19015660
-
RNA-Seq: a revolutionary tool for transcriptomics. Wang Z, Gerstein M, Snyder M, Nature reviews Genetics 2009 10 1 57 63 10.1038/nrg2484 19015660
-
(2009)
Nature Reviews Genetics
, vol.10
, Issue.1
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
3
-
-
79952590347
-
The n-of-1 clinical trial: The ultimate strategy for individualizing medicine?
-
10.2217/pme.11.7 21695041
-
The n-of-1 clinical trial: the ultimate strategy for individualizing medicine? Lillie EO, Patay B, Diamant J, Issell B, Topol EJ, Schork NJ, Personalized medicine 2011 8 2 161 173 10.2217/pme.11.7 21695041
-
(2011)
Personalized Medicine
, vol.8
, Issue.2
, pp. 161-173
-
-
Lillie, E.O.1
Patay, B.2
Diamant, J.3
Issell, B.4
Topol, E.J.5
Schork, N.J.6
-
4
-
-
77952478860
-
Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context
-
10.1186/1471-2105-11-277 20500821
-
Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context. Abraham G, Kowalczyk A, Loi S, Haviv I, Zobel J, Bmc Bioinformatics 2010 11 277 10.1186/1471-2105-11-277 20500821
-
(2010)
Bmc Bioinformatics
, vol.11
, pp. 277
-
-
Abraham, G.1
Kowalczyk, A.2
Loi, S.3
Haviv, I.4
Zobel, J.5
-
5
-
-
77954541112
-
An Integrative Pathway-based Clinical-genomic Model for Cancer Survival Prediction
-
10.1016/j.spl.2010.04.011 21731150
-
An Integrative Pathway-based Clinical-genomic Model for Cancer Survival Prediction. Chen X, Wang L, Ishwaran H, Statistics & probability letters 2010 80 17-18 1313 1319 10.1016/j.spl.2010.04.011 21731150
-
(2010)
Statistics & Probability Letters
, vol.80
, Issue.17-18
, pp. 1313-1319
-
-
Chen, X.1
Wang, L.2
Ishwaran, H.3
-
6
-
-
84929047446
-
N-of-1-pathways unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: Towards precision medicine
-
N-of-1-pathways unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. Gardeux V, Achour I, Maienschein-Cline M, Parinandi G, Li J, Bahroos N, Li H, Garcia JGN, Lussier YA, J Am Med Inform Assoc 2014
-
(2014)
J Am Med Inform Assoc
-
-
Gardeux, V.1
Achour, I.2
Maienschein-Cline, M.3
Parinandi, G.4
Li, J.5
Bahroos, N.6
Li, H.7
Garcia, J.G.N.8
Lussier, Y.A.9
-
7
-
-
84900451610
-
Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays
-
15653641
-
Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays. Yap YL, Lam DC, Luc G, Zhang XW, Hernandez D, Gras R, Wang E, Chiu SW, Chung LP, Lam WK, Smith DK, Minna JD, Danchin A, Wong MP, Nucleic acids research 2005 33 1 409421 15653641
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.1
, pp. 409421
-
-
Yap, Y.L.1
Lam, D.C.2
Luc, G.3
Zhang, X.W.4
Hernandez, D.5
Gras, R.6
Wang, E.7
Chiu, S.W.8
Chung, L.P.9
Lam, W.K.10
Smith, D.K.11
Minna, J.D.12
Danchin, A.13
Wong, M.P.14
-
8
-
-
84872534036
-
A high-throughput assay to identify small-molecule modulators of alternative pre-mRNA splicing
-
10.1177/1087057112459901 22972848
-
A high-throughput assay to identify small-molecule modulators of alternative pre-mRNA splicing. Arslan AD, He X, Wang M, Rumschlag-Booms E, Rong L, Beck WT, J Biomol Screen 2013 18 2 180 190 10.1177/1087057112459901 22972848
-
(2013)
J Biomol Screen
, vol.18
, Issue.2
, pp. 180-190
-
-
Arslan, A.D.1
He, X.2
Wang, M.3
Rumschlag-Booms, E.4
Rong, L.5
Beck, W.T.6
-
9
-
-
34547489950
-
Knockdown of polypyrimidine tract-binding protein suppresses ovarian tumor cell growth and invasiveness in vitro
-
17310993
-
Knockdown of polypyrimidine tract-binding protein suppresses ovarian tumor cell growth and invasiveness in vitro. He X, Pool M, Darcy KM, Lim SB, Auersperg N, Coon JS, Beck WT, Oncogene 2007 26 34 49614968 17310993
-
(2007)
Oncogene
, vol.26
, Issue.34
, pp. 49614968
-
-
He, X.1
Pool, M.2
Darcy, K.M.3
Lim, S.B.4
Auersperg, N.5
Coon, J.S.6
Beck, W.T.7
-
10
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
10.1093/biostatistics/4.2.249 12925520
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP, Biostatistics (Oxford, England) 2003 4 2 249 264 10.1093/biostatistics/4.2.249 12925520
-
(2003)
Biostatistics (Oxford, England)
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
11
-
-
84888296383
-
-
Affymetrix Power Tools. http://www.affymetrix.com/partners-programs/ programs/developer/tools/powertools.affx
-
Affymetrix Power Tools
-
-
-
12
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G, Nat Genet 2000 25 1 25 29 10.1038/75556 10802651 (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
13
-
-
84900426282
-
The Gene Ontology in 2010: Extensions and refinements
-
19920128
-
The Gene Ontology in 2010: extensions and refinements. Gene Ontology C, Nucleic acids research 2010 38 Database 331 335 19920128
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.DATABASE
, pp. 4331-4335
-
-
Gene Ontology, C.1
-
16
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
10.1186/gb-2004-5-10-r80 15461798
-
Bioconductor: open software development for computational biology and bioinformatics. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J, Genome biology 2004 5 10 80 10.1186/gb-2004-5- 10-r80 15461798
-
(2004)
Genome Biology
, vol.5
, Issue.10
, pp. 1880
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
17
-
-
84863304598
-
R: A language and enviroment for statistical computing
-
R Core Team D Vienna, Austria
-
R: A language and enviroment for statistical computing. R: Development core team, R foundation for statistical computing Vienna, Austria 2004
-
(2004)
R Foundation for Statistical Computing
-
-
-
18
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
KEGG: kyoto encyclopedia of genes and genomes. Kanehisa M, Goto S, Nucleic acids research 2000 28 1 27 30 10.1093/nar/28.1.27 10592173 (Pubitemid 30047706)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
19
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
22080510
-
KEGG for integration and interpretation of large-scale molecular data sets. Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M, Nucleic acids research 2012 40 Database 109 114 22080510
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.DATABASE
, pp. 4109-4114
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
20
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
DOI 10.1073/pnas.0506580102
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP, Proc Natl Acad Sci USA 2005 102 43 15545 15550 10.1073/pnas.0506580102 16199517 (Pubitemid 41528093)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
22
-
-
84863123757
-
Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory
-
10.1136/amiajnl-2011-000482 22278381
-
Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. Li H, Lee Y, Chen JL, Rebman E, Li J, Lussier YA, J Am Med Inform Assoc 2012 19 2 295 305 10.1136/amiajnl-2011-000482 22278381
-
(2012)
J Am Med Inform Assoc
, vol.19
, Issue.2
, pp. 295-305
-
-
Li, H.1
Lee, Y.2
Chen, J.L.3
Rebman, E.4
Li, J.5
Lussier, Y.A.6
-
23
-
-
34547840224
-
Information theory applied to the sparse gene ontology annotation network to predict novel gene function
-
DOI 10.1093/bioinformatics/btm195
-
Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Tao Y, Sam L, Li J, Friedman C, Lussier YA, Bioinformatics 2007 23 13 529 538 10.1093/bioinformatics/btm195 17646340 (Pubitemid 47244440)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Tao, Y.1
Sam, L.2
Li, J.3
Friedman, C.4
Lussier, Y.A.5
-
24
-
-
84863166280
-
Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants
-
10.1136/amiajnl-2011-000656 22319180
-
Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. Regan K, Wang K, Doughty E, Li H, Li J, Lee Y, Kann MG, Lussier YA, J Am Med Inform Assoc 2012 19 2 306 316 10.1136/amiajnl-2011-000656 22319180
-
(2012)
J Am Med Inform Assoc
, vol.19
, Issue.2
, pp. 306-316
-
-
Regan, K.1
Wang, K.2
Doughty, E.3
Li, H.4
Li, J.5
Lee, Y.6
Kann, M.G.7
Lussier, Y.A.8
-
25
-
-
84863174621
-
Biomolecular Systems of Disease Buried Across Multiple GWAS Unveiled by Information Theory and Ontology
-
21347143
-
Biomolecular Systems of Disease Buried Across Multiple GWAS Unveiled by Information Theory and Ontology. Lee Y, Li J, Gamazon E, Chen JL, Tikhomirov A, Cox NJ, Lussier YA, AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science 2010 2010 31 35 21347143
-
(2010)
AMIA Summits on Translational Science Proceedings AMIA Summit on Translational Science
, vol.2010
, pp. 31-35
-
-
Lee, Y.1
Li, J.2
Gamazon, E.3
Chen, J.L.4
Tikhomirov, A.5
Cox, N.J.6
Lussier, Y.A.7
-
26
-
-
84861778204
-
Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
-
10.1101/gad.188037.112 22661231
-
Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. Yap K, Lim ZQ, Khandelia P, Friedman B, Makeyev EV, Genes Dev 2012 26 11 1209 1223 10.1101/gad.188037.112 22661231
-
(2012)
Genes Dev
, vol.26
, Issue.11
, pp. 1209-1223
-
-
Yap, K.1
Lim, Z.Q.2
Khandelia, P.3
Friedman, B.4
Makeyev, E.V.5
-
27
-
-
84875757638
-
Punctuated Evolution of Prostate Cancer Genomes
-
10.1016/j.cell.2013.03.021 23622249
-
Punctuated Evolution of Prostate Cancer Genomes. Baca Sylvan C, Prandi D, Lawrence Michael S, Mosquera Juan M, Romanel A, Drier Y, Park K, Kitabayashi N, MacDonald Theresa Y, Ghandi M, Van Allen E, Kryukov Gregory V, Sboner A, Theurillat J-P, Soong TD, Nickerson E, Auclair D, Tewari A, Beltran H, Onofrio Robert C, Boysen G, Guiducci C, Barbieri Christopher E, Cibulskis K, Sivachenko A, Carter Scott L, Saksena G, Voet D, Ramos Alex H, Winckler W, et al. Cell 2013 153 3 666 677 10.1016/j.cell.2013.03.021 23622249
-
(2013)
Cell
, vol.153
, Issue.3
, pp. 666-677
-
-
Baca Sylvan, C.1
Prandi, D.2
Lawrence Michael, S.3
Mosquera Juan, M.4
Romanel, A.5
Drier, Y.6
Park, K.7
Kitabayashi, N.8
Macdonald Theresa, Y.9
Ghandi, M.10
Van Allen, E.11
Kryukov Gregory, V.12
Sboner, A.13
Theurillat, J.-P.14
Soong, T.D.15
Nickerson, E.16
Auclair, D.17
Tewari, A.18
Beltran, H.19
Onofrio Robert, C.20
Boysen, G.21
Guiducci, C.22
Barbieri Christopher, E.23
Cibulskis, K.24
Sivachenko, A.25
Carter Scott, L.26
Saksena, G.27
Voet, D.28
Ramos Alex, H.29
Winckler, W.30
more..
-
28
-
-
84880240161
-
Next-generation sequencing reveals high concordance of recurrent somatic alterations between primary tumor and metastases from patients with non-small-cell lung cancer
-
10.1200/JCO.2012.47.7737 23630207
-
Next-generation sequencing reveals high concordance of recurrent somatic alterations between primary tumor and metastases from patients with non-small-cell lung cancer. Vignot S, Frampton GM, Soria JC, Yelensky R, Commo F, Brambilla C, Palmer G, Moro-Sibilot D, Ross JS, Cronin MT, Andre F, Stephens PJ, Lazar V, Miller VA, Brambilla E, J Clin Oncol 2013 31 17 2167 2172 10.1200/JCO.2012.47.7737 23630207
-
(2013)
J Clin Oncol
, vol.31
, Issue.17
, pp. 2167-2172
-
-
Vignot, S.1
Frampton, G.M.2
Soria, J.C.3
Yelensky, R.4
Commo, F.5
Brambilla, C.6
Palmer, G.7
Moro-Sibilot, D.8
Ross, J.S.9
Cronin, M.T.10
Andre, F.11
Stephens, P.J.12
Lazar, V.13
Miller, V.A.14
Brambilla, E.15
-
29
-
-
84875758730
-
Lessons from the Cancer Genome
-
10.1016/j.cell.2013.03.002 23540688
-
Lessons from the Cancer Genome. Garraway Levi A, Lander Eric S, Cell 2013 153 1 17 37 10.1016/j.cell.2013.03.002 23540688
-
(2013)
Cell
, vol.153
, Issue.1
, pp. 17-37
-
-
Garraway Levi, A.1
Lander Eric, S.2
-
30
-
-
84880472975
-
Precision oncology: An overview
-
10.1200/JCO.2013.49.4799 23589545
-
Precision oncology: an overview. Garraway LA, Verweij J, Ballman KV, J Clin Oncol 2013 31 15 1803 1805 10.1200/JCO.2013.49.4799 23589545
-
(2013)
J Clin Oncol
, vol.31
, Issue.15
, pp. 1803-1805
-
-
Garraway, L.A.1
Verweij, J.2
Ballman, K.V.3
|