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Volumn 7, Issue SUPPL.1, 2014, Pages

Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study

Author keywords

[No Author keywords available]

Indexed keywords

DOXYCYCLINE; POLYPYRIMIDINE TRACT BINDING PROTEIN; POLYPYRIMIDINE TRACT BINDING PROTEIN 1; UNCLASSIFIED DRUG; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; PTBP1 PROTEIN, HUMAN; SMALL INTERFERING RNA;

EID: 84900404206     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-7-S1-S1     Document Type: Article
Times cited : (17)

References (30)
  • 2
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • 10.1038/nrg2484 19015660
    • RNA-Seq: a revolutionary tool for transcriptomics. Wang Z, Gerstein M, Snyder M, Nature reviews Genetics 2009 10 1 57 63 10.1038/nrg2484 19015660
    • (2009) Nature Reviews Genetics , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 3
    • 79952590347 scopus 로고    scopus 로고
    • The n-of-1 clinical trial: The ultimate strategy for individualizing medicine?
    • 10.2217/pme.11.7 21695041
    • The n-of-1 clinical trial: the ultimate strategy for individualizing medicine? Lillie EO, Patay B, Diamant J, Issell B, Topol EJ, Schork NJ, Personalized medicine 2011 8 2 161 173 10.2217/pme.11.7 21695041
    • (2011) Personalized Medicine , vol.8 , Issue.2 , pp. 161-173
    • Lillie, E.O.1    Patay, B.2    Diamant, J.3    Issell, B.4    Topol, E.J.5    Schork, N.J.6
  • 4
    • 77952478860 scopus 로고    scopus 로고
    • Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context
    • 10.1186/1471-2105-11-277 20500821
    • Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context. Abraham G, Kowalczyk A, Loi S, Haviv I, Zobel J, Bmc Bioinformatics 2010 11 277 10.1186/1471-2105-11-277 20500821
    • (2010) Bmc Bioinformatics , vol.11 , pp. 277
    • Abraham, G.1    Kowalczyk, A.2    Loi, S.3    Haviv, I.4    Zobel, J.5
  • 5
    • 77954541112 scopus 로고    scopus 로고
    • An Integrative Pathway-based Clinical-genomic Model for Cancer Survival Prediction
    • 10.1016/j.spl.2010.04.011 21731150
    • An Integrative Pathway-based Clinical-genomic Model for Cancer Survival Prediction. Chen X, Wang L, Ishwaran H, Statistics & probability letters 2010 80 17-18 1313 1319 10.1016/j.spl.2010.04.011 21731150
    • (2010) Statistics & Probability Letters , vol.80 , Issue.17-18 , pp. 1313-1319
    • Chen, X.1    Wang, L.2    Ishwaran, H.3
  • 8
    • 84872534036 scopus 로고    scopus 로고
    • A high-throughput assay to identify small-molecule modulators of alternative pre-mRNA splicing
    • 10.1177/1087057112459901 22972848
    • A high-throughput assay to identify small-molecule modulators of alternative pre-mRNA splicing. Arslan AD, He X, Wang M, Rumschlag-Booms E, Rong L, Beck WT, J Biomol Screen 2013 18 2 180 190 10.1177/1087057112459901 22972848
    • (2013) J Biomol Screen , vol.18 , Issue.2 , pp. 180-190
    • Arslan, A.D.1    He, X.2    Wang, M.3    Rumschlag-Booms, E.4    Rong, L.5    Beck, W.T.6
  • 9
    • 34547489950 scopus 로고    scopus 로고
    • Knockdown of polypyrimidine tract-binding protein suppresses ovarian tumor cell growth and invasiveness in vitro
    • 17310993
    • Knockdown of polypyrimidine tract-binding protein suppresses ovarian tumor cell growth and invasiveness in vitro. He X, Pool M, Darcy KM, Lim SB, Auersperg N, Coon JS, Beck WT, Oncogene 2007 26 34 49614968 17310993
    • (2007) Oncogene , vol.26 , Issue.34 , pp. 49614968
    • He, X.1    Pool, M.2    Darcy, K.M.3    Lim, S.B.4    Auersperg, N.5    Coon, J.S.6    Beck, W.T.7
  • 11
    • 84888296383 scopus 로고    scopus 로고
    • Affymetrix Power Tools. http://www.affymetrix.com/partners-programs/ programs/developer/tools/powertools.affx
    • Affymetrix Power Tools
  • 13
    • 84900426282 scopus 로고    scopus 로고
    • The Gene Ontology in 2010: Extensions and refinements
    • 19920128
    • The Gene Ontology in 2010: extensions and refinements. Gene Ontology C, Nucleic acids research 2010 38 Database 331 335 19920128
    • (2010) Nucleic Acids Research , vol.38 , Issue.DATABASE , pp. 4331-4335
    • Gene Ontology, C.1
  • 17
    • 84863304598 scopus 로고    scopus 로고
    • R: A language and enviroment for statistical computing
    • R Core Team D Vienna, Austria
    • R: A language and enviroment for statistical computing. R: Development core team, R foundation for statistical computing Vienna, Austria 2004
    • (2004) R Foundation for Statistical Computing
  • 18
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • KEGG: kyoto encyclopedia of genes and genomes. Kanehisa M, Goto S, Nucleic acids research 2000 28 1 27 30 10.1093/nar/28.1.27 10592173 (Pubitemid 30047706)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 19
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • 22080510
    • KEGG for integration and interpretation of large-scale molecular data sets. Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M, Nucleic acids research 2012 40 Database 109 114 22080510
    • (2012) Nucleic Acids Research , vol.40 , Issue.DATABASE , pp. 4109-4114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 22
    • 84863123757 scopus 로고    scopus 로고
    • Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory
    • 10.1136/amiajnl-2011-000482 22278381
    • Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. Li H, Lee Y, Chen JL, Rebman E, Li J, Lussier YA, J Am Med Inform Assoc 2012 19 2 295 305 10.1136/amiajnl-2011-000482 22278381
    • (2012) J Am Med Inform Assoc , vol.19 , Issue.2 , pp. 295-305
    • Li, H.1    Lee, Y.2    Chen, J.L.3    Rebman, E.4    Li, J.5    Lussier, Y.A.6
  • 23
    • 34547840224 scopus 로고    scopus 로고
    • Information theory applied to the sparse gene ontology annotation network to predict novel gene function
    • DOI 10.1093/bioinformatics/btm195
    • Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Tao Y, Sam L, Li J, Friedman C, Lussier YA, Bioinformatics 2007 23 13 529 538 10.1093/bioinformatics/btm195 17646340 (Pubitemid 47244440)
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Tao, Y.1    Sam, L.2    Li, J.3    Friedman, C.4    Lussier, Y.A.5
  • 24
    • 84863166280 scopus 로고    scopus 로고
    • Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants
    • 10.1136/amiajnl-2011-000656 22319180
    • Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. Regan K, Wang K, Doughty E, Li H, Li J, Lee Y, Kann MG, Lussier YA, J Am Med Inform Assoc 2012 19 2 306 316 10.1136/amiajnl-2011-000656 22319180
    • (2012) J Am Med Inform Assoc , vol.19 , Issue.2 , pp. 306-316
    • Regan, K.1    Wang, K.2    Doughty, E.3    Li, H.4    Li, J.5    Lee, Y.6    Kann, M.G.7    Lussier, Y.A.8
  • 26
    • 84861778204 scopus 로고    scopus 로고
    • Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
    • 10.1101/gad.188037.112 22661231
    • Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. Yap K, Lim ZQ, Khandelia P, Friedman B, Makeyev EV, Genes Dev 2012 26 11 1209 1223 10.1101/gad.188037.112 22661231
    • (2012) Genes Dev , vol.26 , Issue.11 , pp. 1209-1223
    • Yap, K.1    Lim, Z.Q.2    Khandelia, P.3    Friedman, B.4    Makeyev, E.V.5
  • 29
    • 84875758730 scopus 로고    scopus 로고
    • Lessons from the Cancer Genome
    • 10.1016/j.cell.2013.03.002 23540688
    • Lessons from the Cancer Genome. Garraway Levi A, Lander Eric S, Cell 2013 153 1 17 37 10.1016/j.cell.2013.03.002 23540688
    • (2013) Cell , vol.153 , Issue.1 , pp. 17-37
    • Garraway Levi, A.1    Lander Eric, S.2
  • 30
    • 84880472975 scopus 로고    scopus 로고
    • Precision oncology: An overview
    • 10.1200/JCO.2013.49.4799 23589545
    • Precision oncology: an overview. Garraway LA, Verweij J, Ballman KV, J Clin Oncol 2013 31 15 1803 1805 10.1200/JCO.2013.49.4799 23589545
    • (2013) J Clin Oncol , vol.31 , Issue.15 , pp. 1803-1805
    • Garraway, L.A.1    Verweij, J.2    Ballman, K.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.