-
1
-
-
78049245056
-
A mathematical framework to determine the temporal sequence of somatic genetic events in cancer
-
Attolini, C. et al. (2010) A mathematical framework to determine the temporal sequence of somatic genetic events in cancer. Proc. Natl Acad. Sci. USA, 107, 17604-17609.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 17604-17609
-
-
Attolini, C.1
-
2
-
-
19544368329
-
Learning multiple evolutionary pathways from cross sectional data
-
Beerenwinkel, N. et al. (2005a) Learning multiple evolutionary pathways from cross sectional data. J. Comput. Biol., 12, 584-598.
-
(2005)
J. Comput. Biol.
, vol.12
, pp. 584-598
-
-
Beerenwinkel, N.1
-
3
-
-
18744366364
-
Mtreemix: A software package for learning and using mixture models of mutagenetic trees
-
Beerenwinkel, N. et al. (2005b) Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics, 21, 2106-2107.
-
(2005)
Bioinformatics
, vol.21
, pp. 2106-2107
-
-
Beerenwinkel, N.1
-
4
-
-
33747173047
-
Evolution on distributive lattices
-
Beerenwinkel, N. et al. (2006) Evolution on distributive lattices. J. Theor. Biol., 242, 409-420.
-
(2006)
J. Theor. Biol.
, vol.242
, pp. 409-420
-
-
Beerenwinkel, N.1
-
5
-
-
38049100456
-
Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
-
Beroukhim, R. et al. (2007) Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma. Proc. Natl Acad. Sci. USA, 104, 20007-20012.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 20007-20012
-
-
Beroukhim, R.1
-
6
-
-
33644701818
-
Inferring a tumor progression model for neuroblastoma from genomic data
-
Bilke, S. (2005) Inferring a tumor progression model for neuroblastoma from genomic data. J. Clin. Oncol., 23, 7322-7331.
-
(2005)
J. Clin. Oncol.
, vol.23
, pp. 7322-7331
-
-
Bilke, S.1
-
7
-
-
0020259924
-
Statistical analysis of cytogenetic abnormalities in human cancer cells
-
Brodeur, G. et al. (1982) Statistical analysis of cytogenetic abnormalities in human cancer cells. Cancer Genet. Cytogenet., 7, 137-152.
-
(1982)
Cancer Genet. Cytogenet.
, vol.7
, pp. 137-152
-
-
Brodeur, G.1
-
8
-
-
51349126920
-
Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing
-
Campbell, P.J. et al. (2008) Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing. Proc. Natl Acad. Sci. USA, 105, 13081-13086.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 13081-13086
-
-
Campbell, P.J.1
-
9
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
Cancer Genome Atlas Research Network. (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature, 455, 1061-1068.
-
(2008)
Nature
, vol.455
, pp. 1061-1068
-
-
-
10
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. Nature, 474, 609-615.
-
(2011)
Nature
, vol.474
, pp. 609-615
-
-
-
11
-
-
0034919518
-
Distance-based reconstruction of tree models for oncogenesis
-
Desper, R. et al. (2000) Distance-based reconstruction of tree models for oncogenesis. J. Comput. Biol., 7, 789-803.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 789-803
-
-
Desper, R.1
-
12
-
-
80055101101
-
Temporal dissection of tumorigenesis in primary cancers
-
Durinck, S. et al. (2011) Temporal dissection of tumorigenesis in primary cancers. Cancer Discov., 1, 137-143.
-
(2011)
Cancer Discov.
, vol.1
, pp. 137-143
-
-
Durinck, S.1
-
13
-
-
0025312728
-
A genetic model for colorectal tumorigenesis
-
Fearon, E. and Vogelstein, B. (1990) A genetic model for colorectal tumorigenesis. Cell, 61, 759-767.
-
(1990)
Cell
, vol.61
, pp. 759-767
-
-
Fearon, E.1
Vogelstein, B.2
-
14
-
-
48649106065
-
Cell lineage analysis of a mouse tumor
-
Frumkin, D. et al. (2008) Cell lineage analysis of a mouse tumor. Cancer Res., 68, 5924-5931.
-
(2008)
Cancer Res.
, vol.68
, pp. 5924-5931
-
-
Frumkin, D.1
-
15
-
-
84863393080
-
Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
-
Gerlinger, M. et al. (2012) Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N. Eng. J. Med., 366, 883-892.
-
(2012)
N. Eng. J. Med.
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
-
16
-
-
70350672603
-
Quantifying cancer progression with conjunctive Bayesian networks
-
Gerstung, M. et al. (2009) Quantifying cancer progression with conjunctive Bayesian networks. Bioinformatics, 25, 2809-2815.
-
(2009)
Bioinformatics
, vol.25
, pp. 2809-2815
-
-
Gerstung, M.1
-
17
-
-
84863393305
-
Estimation of rearrangement phylogeny for cancer genomes
-
Greenman, C.D. et al. (2012) Estimation of rearrangement phylogeny for cancer genomes. Genome Res., 22, 346-361.
-
(2012)
Genome Res.
, vol.22
, pp. 346-361
-
-
Greenman, C.D.1
-
18
-
-
33745296683
-
New probabilistic network models and algorithms for oncogenesis
-
Hjelm, M. et al. (2006) New probabilistic network models and algorithms for oncogenesis. J. Comput. Biol., 13, 853-865.
-
(2006)
J. Comput. Biol.
, vol.13
, pp. 853-865
-
-
Hjelm, M.1
-
19
-
-
38349019571
-
Bayesian analysis of frequency of allelic loss data
-
Huang, H. et al. (2007) Bayesian analysis of frequency of allelic loss data. J. Am. Stat. Assoc., 102, 1245-1253.
-
(2007)
J. Am. Stat. Assoc.
, vol.102
, pp. 1245-1253
-
-
Huang, H.1
-
20
-
-
69949122581
-
Inferring progression models for CGH data
-
Liu, J. et al. (2009) Inferring progression models for CGH data. Bioinformatics, 25, 2208-2215.
-
(2009)
Bioinformatics
, vol.25
, pp. 2208-2215
-
-
Liu, J.1
-
21
-
-
77953870937
-
Tracing the tumor lineage
-
Navin, N.E. and Hicks, J. (2010) Tracing the tumor lineage. Mol. Oncol., 4, 267-283.
-
(2010)
Mol. Oncol.
, vol.4
, pp. 267-283
-
-
Navin, N.E.1
Hicks, J.2
-
22
-
-
0036970595
-
Discovering combinations of genomic aberrations associated with cancer
-
Newton, M.A. (2002) Discovering combinations of genomic aberrations associated with cancer. J. Am. Stat. Assoc., 97, 931-942.
-
(2002)
J. Am. Stat. Assoc.
, vol.97
, pp. 931-942
-
-
Newton, M.A.1
-
23
-
-
0033636502
-
Inferring the location and effect of tumor suppressor genes by instability-selection modeling of allelic-loss data
-
Newton, M.A. and Lee, Y. (2000) Inferring the location and effect of tumor suppressor genes by instability-selection modeling of allelic-loss data. Biometrics, 56, 1088-1097.
-
(2000)
Biometrics
, vol.56
, pp. 1088-1097
-
-
Newton, M.A.1
Lee, Y.2
-
24
-
-
0028258578
-
Assessing the significance of chromosome-loss data: Where are suppressor genes for bladder cancer?
-
Newton, M.A. et al. (1994) Assessing the significance of chromosome-loss data: where are suppressor genes for bladder cancer? Stat. Med., 13, 839-858.
-
(1994)
Stat. Med.
, vol.13
, pp. 839-858
-
-
Newton, M.A.1
-
25
-
-
0032528231
-
On the statistical analysis of allelic-loss data
-
Newton, M. et al. (1998) On the statistical analysis of allelic-loss data. Stat. Med., 17, 1425-1445.
-
(1998)
Stat. Med.
, vol.17
, pp. 1425-1445
-
-
Newton, M.1
-
26
-
-
84861550476
-
The life history of 21 Breast cancers
-
Nik-Zainal, S. et al. (2012) The life history of 21 breast cancers. Cell, 149, 994-1007.
-
(2012)
Cell
, vol.149
, pp. 994-1007
-
-
Nik-Zainal, S.1
-
27
-
-
0030838976
-
Genetic alterations in primary Breast cancers and their metastases: Direct comparison using modified comparative genomic hybridization
-
Nishizaki, T. et al. (1997) Genetic alterations in primary breast cancers and their metastases: direct comparison using modified comparative genomic hybridization. Genes Chromosomes Cancer, 19, 267-272.
-
(1997)
Genes Chromosomes Cancer
, vol.19
, pp. 267-272
-
-
Nishizaki, T.1
-
28
-
-
19544368188
-
Estimating cancer survival and clinical outcome based on genetic tumor progression scores
-
Rahnenfuhrer, J. et al. (2005) Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinformatics, 21, 2438-2446.
-
(2005)
Bioinformatics
, vol.21
, pp. 2438-2446
-
-
Rahnenfuhrer, J.1
-
29
-
-
0036570403
-
Comparison of accumulated allele loss between primary tumor and lymph node metastasis in stage II non-small cell lung carcinoma: Implications for the timing of lymph node metastasis and prognostic value
-
Sasatomi, E. et al. (2002) Comparison of accumulated allele loss between primary tumor and lymph node metastasis in stage II non-small cell lung carcinoma: implications for the timing of lymph node metastasis and prognostic value. Cancer Res., 62, 2681-2689.
-
(2002)
Cancer Res.
, vol.62
, pp. 2681-2689
-
-
Sasatomi, E.1
-
30
-
-
63849149890
-
Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers
-
Siegmund, K.D. et al. (2009) Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers. Proc. Natl Acad. Sci. USA, 106, 4828-4833.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 4828-4833
-
-
Siegmund, K.D.1
-
31
-
-
0034110066
-
Chromosome abnormalities in ovarian adenocarcinoma: III. Using breakpoint data to infer and test mathematical models for oncogenesis
-
Simon, R. et al. (2000) Chromosome abnormalities in ovarian adenocarcinoma: III. Using breakpoint data to infer and test mathematical models for oncogenesis. GGenes Chromosomes Cancer, 28, 106-120.
-
(2000)
GGenes Chromosomes Cancer
, vol.28
, pp. 106-120
-
-
Simon, R.1
-
32
-
-
79960093087
-
Accurate reconstruction of the temporal order of mutations in neoplastic progression
-
Sprouffske, K. et al. (2011) Accurate reconstruction of the temporal order of mutations in neoplastic progression. Cancer Prev. Res., 4, 1135-1144.
-
(2011)
Cancer Prev. Res.
, vol.4
, pp. 1135-1144
-
-
Sprouffske, K.1
-
33
-
-
58149112821
-
Functional copy-number alterations in cancer
-
Taylor, B.S. et al. (2008) Functional copy-number alterations in cancer. PLoS One, 3, e3179.
-
(2008)
PLoS One
, vol.3
-
-
Taylor, B.S.1
|