Genetic diversity of the root-knot nematode Meloidogyne ethiopica and development of a species-specific SCAR marker for its diagnosis

Plant Pathology

Volumn 63, Issue 2, 2014, Pages 476-483

  Correa, V R ^a,b   Mattos, V S ^a   Almeida, M R A ^a   Santos, M F A ^a   Tigano, M S ^a   Castagnone Sereno, P ^c   Carneiro, R M D G ^a  

^a EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^b UNIVERSITY OF BRASILIA   (Brazil)

^c CNRS   (France)

Author keywords

Amplified fragment length polymorphisms; Diagnostic; Intraspecific diversity; Multiplex SCAR PCR; RAPD; Root knot nematodes

Indexed keywords

DEVELOPMENTAL BIOLOGY; GENETIC DIFFERENTIATION; GENETIC MARKER; GENOMICS; GEOGRAPHICAL DISTRIBUTION; GEOGRAPHICAL REGION; HOST PLANT; HOST-PATHOGEN INTERACTION; IDENTIFICATION METHOD; NEMATODE; POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; VINE;

BRAZIL; CHILE; ETHIOPIA;

ACTINIDIA DELICIOSA; MELOIDOGYNE; MELOIDOGYNE ETHIOPICA; MELOIDOGYNE JAVANICA; NEMATODA; VITIS;

EID: 84900351515     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/ppa.12108     Document Type: Article

References (36)

1. Blok VC, 2005. Achievements in and future prospects for molecular diagnostics of plant-parasitic nematodes. Canadian Journal of Plant Pathology 27, 176-85.
2. Blok VC, Powers O, 2009. Biochemical and molecular identification. In: Perry RN, Moens M, Starr JL, eds. Root Knot Nematodes. Wallingford, UK: CABI International, 98-118.
3. Carneiro RMDG, Almeida MRA, 2001. Técnica de eletroforese usada no estudo de enzimas dos nematóides de galhas para identificação de espécies. Nematologia Brasileira 25, 35-44.
4. Carneiro RMOG, Almeida MRA, Carneiro RG, 1996. Enzyme phenotypes of Brazilian populations of Meloidogyne spp. Fundamental and Applied Nematology 19, 555-60.
5. Carneiro RMDG, Castagnone-Sereno P, Dickson DW, 1998. Variability among four populations of Meloidogyne javanica from Brazil. Fundamental and Applied Nematology 21, 319-26.
6. Carneiro RMDG, Gomes CB, Almeida MRA, Gomes ACMM, Martins I, 2003. Primeiro registro de Meloidogyne ethiopica Whitehead, 1968, em plantas de quivi no Brasil e reação em diferentes plantas cultivadas. Nematologia Brasileira 27, 151-8.
7. Carneiro RMDG, Randig O, Almeida MRA, Gomes ACMM, 2004. Additional information on Meloidogyne ethiopica Whitehead, 1968 (Tylenchida: Meloidogynidae), a root-knot nematode parasitising kiwi fruit and grape-vine from Brazil and Chile. Nematology 6, 109-23.
8. Carneiro RMDG, Almeida MRA, Cofcewicz ET, Magunacelaya JC, Aballay E, 2007. Meloidogyne ethiopica, a major root-knot nematode parasitizing Vitis vinifera and other crops in Chile. Nematology 9, 635-41.
9. Carneiro RMDG, Santos MFA, Almeida MRA, Mota FC, Gomes ACMM, Tigano MS, 2008a. Diversity of Meloidogyne arenaria using morphological, cytological and molecular approaches. Nematology 10, 819-34.
10. Carneiro RMDG, Mendes ML, Almeida MRA, Santos MFA, Gomes ACMM, Karssen G, 2008b. Additional information on Meloidogyne inornata Lordello, 1956 (Tylenchida: Meloidogynidae) and its characterisation as a valid species. Nematology 10, 123-36.
11. Castagnone-Sereno P, Vanlerberghe-Masutti F, Leroy F, 1994. Genetic polymorphism between and within Meloidogyne species detected with RAPD markers. Genome 37, 904-9.
12. Castagnone-Sereno P, Esparrago G, Abad P, Leroy F, Bongiovanni M, 1995. Satellite DNA as a target for PCR-specific detection of the plant-parasitic nematode Meloidogyne hapla. Current Genetics 28, 566-70.
13. Cenis JL, 1993. Identification of four major Meloidogyne spp. by random amplified polymorphic DNA (RAPD-PCR). Phytopathology 83, 76-80.
14. Conceição IL, Tzortzakakis EA, Gomes P, Abrantes I, da Cunha MJ, 2012. Detection of the root-knot nematode Meloidogyne ethiopica in Greece. European Journal of Plant Pathology 134, 451-7.
15. Fargette M, Lollier V, Phillips M, Blok V, Frutos R, 2005. AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies 328, 455-62.
16. Huelsenbeck JP, Bull JJ, Cunningham CW, 1996. Combining data in phylogenetic analysis. Trends in Ecology and Evolution 11, 152-8.
17. Hunt DJ, Handoo ZA, 2009. Root knot nematodes: taxonomy, identification and principal species. In: Perry RN, Moens M, Starr JL, eds. Root Knot Nematodes. Wallingford, UK: CABI International, 55-97.
18. Lima EA, Mattos JK, Moita AW, Carneiro RG, Carneiro RMDG, 2009. Host status of different crops for Meloidogyne ethiopica control. Tropical Plant Pathology 34, 152-7.
19. McClure MA, Kruk TH, Migashi I, 1973. A method for obtaining quantities of clean Meloidogyne eggs. Journal of Nematology 5, 230.
20. Powers T, 2004. Nematode molecular diagnostics: from bands to barcodes. Annual Review of Phytopathology 42, 367-83.
21. Randig O, Bongiovanni M, Carneiro RMDG, Castagnone-Sereno P, 2002. Genetic diversity of root-knot nematodes from Brazil and development of SCAR markers specific for the coffee-damaging species. Genome, 45, 862-70.
22. Rozen S, Skaletsky HJ, 2000. primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, eds. Bioinformatics Methods and Protocols: Methods in Molecular Biology. Totowa, NJ, USA: Humana Press, 365-86.
23. Saitou N, Nei M, 1987. The neighbor-joining method, a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-25.
24. Santos MFA, Furlanetto C, Almeida MRA et al., 2012. Biometrical, biological, biochemical and molecular characteristics of Meloidogyne incognita isolates and related species. European Journal of Plant Pathology 134, 671-84.
25. Širca S, Urek G, Karssen G, 2004. First report of the root-knot nematode Meloidogyne ethiopica on tomato in Slovenia. Plant Disease 88, 680.
26. Strajnar P, Širca S, Knapič M, Urek G, 2011. Effect of Slovenian climatic conditions on the development and survival of the root-knot nematode Meloidogyne ethiopica. European Journal of Plant Pathology 129, 81-8.
27. Suazo A, Hall HG, 1999. Modification of the AFLP protocol applied to honey bee (Apis mellifera L.) DNA. BioTechniques 26, 704-9.
28. Swofford DL, 2002. paup*: Phylogenetic Analysis Using Parsimony (*and Other Methods) version 4b10. Sunderland, USA: Sinauer Associates.
29. Tigano MS, Carneiro RMDG, Jeyaprakash A, Dickson DW, Adams BJ, 2005. Phylogeny of Meloidogyne spp. based on 18S rDNA and the intergenic region of mitochondrial DNA sequences. Nematology 7, 851-62.
30. Tigano M, De Siqueira K, Castagnone-Sereno P et al., 2010. Genetic diversity of the root-knot nematode Meloidogyne enterolobii and development for SCAR marker for this guava-damaging species. Plant Pathology 59, 1054-61.
31. Triantaphyllou AC, 1985. Cytogenetics, cytotaxonomy and phylogeny of root-knot nematodes. In: Sasser JN, Carter CC, eds. An Advanced Treatise on Meloidogyne, Vol. I. Biology and Control. Raleigh, NC, USA: North Carolina State University Graphics, 113-26.
32. Vos P, Hogers R, Bleeker M et al., 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23, 4407-14.
33. Welsh J, McClelland M, 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 18, 7213-8.
34. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV, 1990. DNA polymorphisms amplified by arbitrary primers are useful genetic markers. Nucleic Acids Research 18, 6531-5.
35. Zijlstra C, 2000. Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits. European Journal of Plant Pathology 106, 283-90.
36. Zijlstra C, Donkers-Venne DTHM, Fargette M, 2000. Identification of Meloidogyne incognita, M. javanica and M. arenaria using sequence characterised amplified region (SCAR) based PCR assays. Nematology 2, 847-53.