New astrovirus in human feces from Burkina Faso

Journal of Clinical Virology

Volumn 60, Issue 2, 2014, Pages 161-164

  Phan, Tung Gia ^a,b   Nordgren, Johan ^c   Ouermi, Djeneba ^d   Simpore, Jacques ^d   Nitiema, Leon W ^d   Deng, Xutao ^a   Delwart, Eric ^a,b  

^a BLOOD SYSTEMS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c LINKÖPING UNIVERSITY   (Sweden)

^d UNIVERSITÉ DE OUAGADOUGOU   (Burkina Faso)

Author keywords

Astrovirus; Children; Diarrhea; Metagenomics; Species

Indexed keywords

CAPSID PROTEIN; RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

ABDOMINAL PAIN; ACUTE GASTROENTERITIS; AMINO ACID SEQUENCE; ARTICLE; ASTROVIRUS; ASTROVIRUS INFECTION; BURKINA FASO; CHILD; CLINICAL ARTICLE; DIARRHEA; DNA BASE COMPOSITION; DOG; FECES ANALYSIS; FEVER; GENBANK; HEALTH MAINTENANCE ORGANIZATION; HUMAN; LIQUID FECES; METAGENOMICS; MIXED INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PARECHOVIRUS; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DATABASE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; START CODON; SWINE; VIRUS CAPSID; VIRUS DETECTION; VIRUS PARTICLE; VOMITING; CLASSIFICATION; DNA SEQUENCE; FECES; FEMALE; GENETICS; INFANT; ISOLATION AND PURIFICATION; MALE; MOLECULAR GENETICS; PRESCHOOL CHILD; VIROLOGY; VIRUS GENOME;

ASTROVIRIDAE INFECTIONS; BURKINA FASO; CHILD; CHILD, PRESCHOOL; DIARRHEA; FECES; FEMALE; GENOME, VIRAL; HUMANS; INFANT; MALE; MAMASTROVIRUS; MOLECULAR SEQUENCE DATA; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 84900341159     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2014.03.024     Document Type: Article

References (25)

1. Madeley C.R., Cosgrove B.P. Letter: 28 nm particles in faeces in infantile gastroenteritis. Lancet 1975, 2:451-452.
2. Finkbeiner S.R., Kirkwood C.D., Wang D. Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea. Virol J 2008, 5:117.
3. Finkbeiner S.R., Holtz L.R., Jiang Y., Rajendran P., Franz C.J., Zhao G., et al. Human stool contains a previously unrecognized diversity of novel astroviruses. Virol J 2009, 6:161.
4. Kapoor A., Li L., Victoria J., Oderinde B., Mason C., Pandey P., et al. Multiple novel astrovirus species in human stool. J Gen Virol 2009, 90:2965-2972.
5. Finkbeiner S.R., Li Y., Ruone S., Conrardy C., Gregoricus N., Toney D., et al. Identification of a novel astrovirus (astrovirus VA1) associated with an outbreak of acute gastroenteritis. J Virol 2009, 83:10836-10839.
6. Jiang H., Holtz L.R., Bauer I., Franz C.J., Zhao G., Bodhidatta L., et al. Comparison of novel MLB-clade, VA-clade and classic human astroviruses highlights constrained evolution of the classic human astrovirus nonstructural genes. Virology 2013, 436:8-14.
7. Burbelo P.D., Ching K.H., Esper F., Iadarola M.J., Delwart E., Lipkin W.I., et al. Serological studies confirm the novel astrovirus HMOAstV-C as a highly prevalent human infectious agent. PLoS ONE 2011, 6:e22576.
8. Nitiema L.W., Nordgren J., Ouermi D., Dianou D., Traore A.S., Svensson L., et al. Burden of rotavirus and other enteropathogens among children with diarrhea in Burkina Faso. Int J Infect Dis 2011, 15:e646-e652.
9. Nordgren J., Nitiema L.W., Ouermi D., Simpore J., Svensson L. Host genetic factors affect susceptibility to norovirus infections in Burkina Faso. PLoS ONE 2013, 8:e69557.
10. Victoria J.G., Kapoor A., Li L., Blinkova O., Slikas B., Wang C., et al. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol 2009, 83:4642-4651.
11. De Benedictis P., Schultz-Cherry S., Burnham A., Cattoli G. Astrovirus infections in humans and animals - molecular biology, genetic diversity, and interspecies transmissions. Infect Genet Evol 2011, 11:1529-1544.
12. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
13. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
14. Guix S., Bosch A., Pinto R.M. Human astrovirus diagnosis and typing: current and future prospects. Lett Appl Microbiol 2005, 41:103-105.
15. Afrad M.H., Karmakar P.C., Das S.K., Matthijnssens J., Ahmed F., Nahar S., et al. Epidemiology and genetic diversity of human astrovirus infection among hospitalized patients with acute diarrhea in Bangladesh from 2010 to 2012. J Clin Virol 2013, 58:612-618.
16. Matsumoto T., Wangchuk S., Tshering K., Yahiro T., Zangmo S., Dorji T., et al. Complete genome sequences of two astrovirus MLB1 strains from Bhutanese children with diarrhea. Genome Announc 2013, 1.
17. Wang Y., Li Y., Jin Y., Li D.D., Li X., Duan Z.J. Recently identified novel human astroviruses in children with diarrhea, China. Emerg Infect Dis 2013, 19:1333-1335.
18. Wunderli W., Meerbach A., Gungor T., Berger C., Greiner O., Caduff R., et al. Astrovirus infection in hospitalized infants with severe combined immunodeficiency after allogeneic hematopoietic stem cell transplantation. PLoS ONE 2011, 6:e27483.
19. Wood D.J., David T.J., Chrystie I.L., Totterdell B. Chronic enteric virus infection in two T-cell immunodeficient children. J Med Virol 1988, 24:435-444.
20. Quan P.L., Wagner T.A., Briese T., Torgerson T.R., Hornig M., Tashmukhamedova A., et al. Astrovirus encephalitis in boy with X-linked agammaglobulinemia. Emerg Infect Dis 2010, 16:918-925.
21. Holtz L.R., Wylie K.M., Sodergren E., Jiang Y., Franz C.J., Weinstock G.M., et al. Astrovirus MLB2 viremia in febrile child. Emerg Infect Dis 2011, 17:2050-2052.
22. Blomstrom A.L., Widen F., Hammer A.S., Belak S., Berg M. Detection of a novel astrovirus in brain tissue of mink suffering from shaking mink syndrome by use of viral metagenomics. J Clin Microbiol 2010, 48:4392-4396.
23. Li L., Diab S., McGraw S., Barr B., Traslavina R., Higgins R., et al. Divergent astrovirus associated with neurologic disease in cattle. Emerg Infect Dis 2013, 19:1385-1392.
24. Zhu H.C., Chu D.K., Liu W., Dong B.Q., Zhang S.Y., Zhang J.X., et al. Detection of diverse astroviruses from bats in China. J Gen Virol 2009, 90:883-887.
25. Holtz L.R., Bauer I.K., Rajendran P., Kang G., Wang D. Astrovirus MLB1 is not associated with diarrhea in a cohort of Indian children. PLoS ONE 2011, 6:e28647.