Epidemiology and genetic diversity of human astrovirus infection among hospitalized patients with acute diarrhea in Bangladesh from 2010 to 2012

Journal of Clinical Virology

Volumn 58, Issue 4, 2013, Pages 612-618

  Afrad, Mokibul Hassan ^a   Karmakar, Polash Chandra ^a   Das, Sumon Kumar ^a   Matthijnssens, Jelle ^b   Ahmed, Farjana ^a   Nahar, Shamsun ^a   Faruque, A S G ^a   Rahman, Mohammed Ziaur ^a   Rahman, Mustafizur ^a   Azim, Tasnim ^a  

^a INTERNATIONAL CENTRE FOR DIARRHOEAL DISEASE RESEARCH   (Bangladesh)

^b REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

Author keywords

Bangladesh; Diarrhea; Epidemiology; Genetic diversity; HAstV 1; Human astrovirus (HAstV)

Indexed keywords

CAPSID PROTEIN;

ABDOMINAL PAIN; ACUTE DIARRHEA; ARTICLE; ASTROVIRUS; ASTROVIRUS INFECTION; BACTERIUM; BANGLADESH; CHILD; CONTROLLED STUDY; DEHYDRATION; DISEASE SEVERITY; DISEASE SURVEILLANCE; EPIDEMIOLOGICAL DATA; FECES CULTURE; FEVER; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HOSPITAL PATIENT; HUMAN; HUMAN ASTROVIRUS; HUMAN ASTROVIRUS INFECTION; MAJOR CLINICAL STUDY; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PATHOGENESIS; PHYLOGENY; PRESCHOOL CHILD; PREVALENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RISK FACTOR; SYMPTOM; VIRAL GASTROENTERITIS; VIRUS CAPSID; VIRUS DETECTION; VIRUS STRAIN; VOMITING;

AA; AMINO ACID; BANGLADESH; DDSS; DIARRHEA; DIARRHEAL DISEASE SURVEILLANCE SYSTEM; ELISA; ENZYME-LINKED IMMUNOSORBENT ASSAY; EPIDEMIOLOGY; GENETIC DIVERSITY; HASTV-1; HASTVS; HUMAN ASTROVIRUS (HASTV); HUMAN ASTROVIRUSES; ICDDR,B; INTERNATIONAL CENTRE FOR DIARRHOEAL DISEASE RESEARCH, BANGLADESH; NT; NUCLEOTIDE; OPEN READING FRAME; ORF; RDRP; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA DEPENDENT RNA POLYMERASE; RT-PCR; ULTRAVIOLET; UV;

AMINO ACID SEQUENCE; ASTROVIRIDAE INFECTIONS; BANGLADESH; CHILD; CHILD, PRESCHOOL; DIARRHEA; FECES; HOSPITALIZATION; HUMANS; INFANT; MAMASTROVIRUS; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHYLOGENY; RETROSPECTIVE STUDIES; SEQUENCE ALIGNMENT;

EID: 84888842147     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2013.09.028     Document Type: Article

References (53)

1. Kotloff K.L., Nataro J.P., Blackwelder W.C., Nasrin D., Farag T.H., Panchalingam S., et al. Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study. Lancet 2013, 382:209-222.
2. Dalton R.M., Roman E.R., Negredo A.A., Wilhelmi I.D., Glass R.I., Sanchez-Fauquier A. Astrovirus acute gastroenteritis among children in Madrid, Spain. Pediatric Infectious Disease Journal 2002, 21:1038-1041.
3. Li C.Y., Liu N., Guo W.D., Yu Q., Wang W.R., Song Z.Z., et al. Outbreak of neonatal gastroenteritis associated with astrovirus serotype 1 at a hospital in Inner Mongolia, China. Journal of Clinical Microbiology 2010, 48:4306-4309.
4. Bhattacharya R., Sahoo G.C., Nayak M.K., Ghosh S., Dutta P., Bhattacharya M.K., et al. Molecular epidemiology of human astrovirus infections in Kolkata, India. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 2006, 6:425-435.
5. Nguyen T.A., Hoang L., Pham le D., Hoang K.T., Mizuguchi M., Okitsu S., et al. Identification of human astrovirus infections among children with acute gastroenteritis in the southern part of Vietnam during 2005-2006. Journal of Medical Virology 2008, 80:298-305.
6. Mendez E.A.C.F. Astroviruses. Fields virology 2007, vol. 1:982-984. Lippincott Williams & Wilkins, Philadelphia, PA. 5th ed.
7. Ulloa J.C., Matiz A., Lareo L., Gutierrez M.F. Molecular analysis of a 348 base-pair segment of open reading frame 2 of human astrovirus. A characterization of Colombian isolates. In Silico Biology 2005, 5:537-546.
8. Gabbay Y.B., Leite J.P., Oliveira D.S., Nakamura L.S., Nunes M.R., Mascarenhas J.D., et al. Molecular epidemiology of astrovirus type 1 in Belem, Brazil, as an agent of infantile gastroenteritis, over a period of 18 years (1982-2000): identification of two possible new lineages. Virus Research 2007, 129:166-174.
9. Glass R.I., Noel J., Mitchell D., Herrmann J.E., Blacklow N.R., Pickering L.K., et al. The changing epidemiology of astrovirus-associated gastroenteritis: a review. Archives of Virology Supplementum 1996, 12:287-300.
10. Mendez-Toss M., Griffin D.D., Calva J., Contreras J.F., Puerto F.I., Mota F., et al. Prevalence and genetic diversity of human astroviruses in Mexican children with symptomatic and asymptomatic infections. Journal of Clinical Microbiology 2004, 42:151-157.
11. Mitchell D.K., Matson D.O., Jiang X., Berke T., Monroe S.S., Carter M.J., et al. Molecular epidemiology of childhood astrovirus infection in child care centers. Journal of Infectious Diseases 1999, 180:514-517.
12. Schnagl R.D., Belfrage K., Farrington R., Hutchinson K., Lewis V., Erlich J., et al. Incidence of human astrovirus in central Australia (1995 to 1998) and comparison of deduced serotypes detected from 1981 to 1998. Journal of Clinical Microbiology 2002, 40:4114-4120.
13. Guerrero M.L., Noel J.S., Mitchell D.K., Calva J.J., Morrow A.L., Martinez J., et al. A prospective study of astrovirus diarrhea of infancy in Mexico City. Pediatric Infectious Disease Journal 1998, 17:723-727.
14. Mendez-Toss M., Romero-Guido P., Munguia M.E., Mendez E., Arias C.F. Molecular analysis of a serotype 8 human astrovirus genome. Journal of General Virology 2000, 81:2891-2897.
15. Verma H., Chitambar S.D., Gopalkrishna V. Astrovirus associated acute gastroenteritis in western India: predominance of dual serotype strains. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 2010, 10:575-579.
16. Pativada M.S., Chatterjee D., Mariyappa N.S., Rajendran K., Bhattacharya M.K., Ghosh M., et al. Emergence of unique variants and inter-genotype recombinants of human astroviruses infecting infants, children and adults in Kolkata, India. International Journal of Molecular Epidemiology and Genetics 2011, 2:228-235.
17. Nair G.B., Ramamurthy T., Bhattacharya M.K., Krishnan T., Ganguly S., Saha D.R., et al. Emerging trends in the etiology of enteric pathogens as evidenced from an active surveillance of hospitalized diarrhoeal patients in Kolkata, India. Gut Pathogens 2010, 2:4.
18. Lindsay B., Ramamurthy T., Sen Gupta S., Takeda Y., Rajendran K., Nair G.B., et al. Diarrheagenic pathogens in polymicrobial infections. Emerging Infectious Diseases 2011, 17:606-611.
19. Keskimaki M., Mattila L., Peltola H., Siitonen A. Prevalence of diarrheagenic Escherichia coli in finns with or without diarrhea during a round-the-world trip. Journal of Clinical Microbiology 2000, 38:4425-4429.
20. Unicomb L.E., Banu N.N., Azim T., Islam A., Bardhan P.K., Faruque A.S., et al. Astrovirus infection in association with acute, persistent and nosocomial diarrhea in Bangladesh. Pediatric Infectious Disease Journal 1998, 17:611-614.
21. Dey S.K., Islam A., Mizuguchi M., Okitsu S., Ushijima H. Epidemiological and molecular analysis of astrovirus gastroenteritis in Dhaka City, Bangladesh. Journal of Tropical Pediatrics 2008, 54:423-425.
22. Stoll B.J., Glass R.I., Huq M.I., Khan M.U., Holt J.E., Banu H. Surveillance of patients attending a diarrhoeal disease hospital in Bangladesh. British Medical Journal (Clinical Research Ed.) 1982, 285:1185-1188.
23. Das S.K., Ahmed S., Ferdous F., Farzana F.D., Chisti M.J., Leung D.T., et al. Changing emergence of Shigella sero-groups in Bangladesh: observation from four different diarrheal disease hospitals. PLoS ONE 2013, 8:e62029.
24. Rahman M., Sultana R., Ahmed G., Nahar S., Hassan Z.M., Saiada F., et al. Prevalence of G2P[4] and G12P[6] rotavirus, Bangladesh. Emerging Infectious Diseases 2007, 13:18-24.
25. Trujillo A.A., McCaustland K.A., Zheng D.P., Hadley L.A., Vaughn G., Adams S.M., et al. Use of TaqMan real-time reverse transcription-PCR for rapid detection, quantification, and typing of norovirus. Journal of Clinical Microbiology 2006, 44:1405-1412.
26. Dey R.S., Ghosh S., Chawla-Sarkar M., Panchalingam S., Nataro J.P., Sur D., et al. Circulation of a novel pattern of infections by enteric adenovirus serotype 41 among children below 5 years of age in Kolkata, India. Journal of Clinical Microbiology 2011, 49:500-505.
27. Yan H., Yagyu F., Okitsu S., Nishio O., Ushijima H. Detection of norovirus (GI, GII), sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. Journal of Virological Methods 2003, 114:37-44.
28. Zoll G.J., Melchers W.J., Kopecka H., Jambroes G., van der Poel H.J., Galama J.M. General primer-mediated polymerase chain reaction for detection of enteroviruses: application for diagnostic routine and persistent infections. Journal of Clinical Microbiology 1992, 30:160-165.
29. Yamashita T., Sugiyama M., Tsuzuki H., Sakae K., Suzuki Y., Miyazaki Y. Application of a reverse transcription-PCR for identification and differentiation of aichi virus, a new member of the picornavirus family associated with gastroenteritis in humans. Journal of Clinical Microbiology 2000, 38:2955-2961.
30. WHO Program for control of diarrheal diseases. Manual for laboratory investigations of acute enteric infections 1987, 5.27. WHO, Geneva.
31. Matsui M., Ushijima H., Hachiya M., Kakizawa J., Wen L., Oseto M., et al. Determination of serotypes of astroviruses by reverse transcription-polymerase chain reaction and homologies of the types by the sequencing of Japanese isolates. Microbiology and Immunology 1998, 42:539-547.
32. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series: Oxford Journals 1999, 41:95-98.
33. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28:2731-2739.
34. Ruuska T., Vesikari T. Rotavirus disease in Finnish children: use of numerical scores for clinical severity of diarrhoeal episodes. Scandinavian Journal of Infectious Diseases 1990, 22:259-267.
35. Guix S., Caballero S., Villena C., Bartolome R., Latorre C., Rabella N., et al. Molecular epidemiology of astrovirus infection in Barcelona, Spain. Journal of Clinical Microbiology 2002, 40:133-139.
36. Grazia D.E., Martella V., Chironna M., Bonura F., Tummolo F., Calderaro A., et al. Nationwide surveillance study of human astrovirus infections in an Italian paediatric population. Epidemiology and Infection 2012, 1-5. [Epub ahead of print].
37. Wang F., Wang Y.H., Peng J.S., Zhou X., Tang L., Kobayashi N., et al. Genetic characterization of human astrovirus infection in Wuhan, People's Republic of China, 2007-2008. Canadian Journal of Microbiology 2011, 57:964-968.
38. Pativada M., Nataraju S.M., Ganesh B., Rajendran K., Ramamurthy T., Ganguly S., et al. Emerging trends in the epidemiology of human astrovirus infection among infants, children and adults hospitalized with acute watery diarrhea in Kolkata, India. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 2012, 12:1685-1693.
39. Tran A., Talmud D., Lejeune B., Jovenin N., Renois F., Payan C., et al. Prevalence of rotavirus, adenovirus, norovirus, and astrovirus infections and coinfections among hospitalized children in northern France. Journal of Clinical Microbiology 2010, 48:1943-1946.
40. Herrmann J.E., Taylor D.N., Echeverria P., Blacklow N.R. Astroviruses as a cause of gastroenteritis in children. New England Journal of Medicine 1991, 324:1757-1760.
41. Lin H.C., Kao C.L., Chang L.Y., Hsieh Y.C., Shao P.L., Lee P.I., et al. Astrovirus gastroenteritis in children in Taipei. Taiwan yi xue hui za zhi 2008, 107:295-303.
42. Mounts A.W., Ando T., Koopmans M., Bresee J.S., Noel J., Glass R.I. Cold weather seasonality of gastroenteritis associated with Norwalk-like viruses. Journal of Infectious Diseases 2000, 181(Suppl. 2):S284-S287.
43. Phan T.G., Okame M., Nguyen T.A., Nishio O., Okitsu S., Ushijima H. Genetic diversity of sapovirus in fecal specimens from infants and children with acute gastroenteritis in Pakistan. Archives of Virology 2005, 150:371-377.
44. Malasao R., Khamrin P., Chaimongkol N., Ushijima H., Maneekarn N. Diversity of human astrovirus genotypes circulating in children with acute gastroenteritis in Thailand during 2000-2011. Journal of Medical Virology 2012, 84:1751-1756.
45. Jeong A.Y., Jeong H.S., Jo M.Y., Jung S.Y., Lee M.S., Lee J.S., et al. Molecular epidemiology and genetic diversity of human astrovirus in South Korea from 2002 to 2007. Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2011, 17:404-408.
46. Babkin I.V., Tikunov A.Y., Zhirakovskaia E.V., Netesov S.V., Tikunova N.V. High evolutionary rate of human astrovirus. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 2012, 12:435-442.
47. Wang Q.H., Kakizawa J., Wen L.Y., Shimizu M., Nishio O., Fang Z.Y., et al. Genetic analysis of the capsid region of astroviruses. Journal of Medical Virology 2001, 64:245-255.
48. Finkbeiner S.R., Holtz L.R., Jiang Y., Rajendran P., Franz C.J., Zhao G., et al. Human stool contains a previously unrecognized diversity of novel astroviruses. Virology Journal 2009, 6:161.
49. Finkbeiner S.R., Li Y., Ruone S., Conrardy C., Gregoricus N., Toney D., et al. Identification of a novel astrovirus (astrovirus VA1) associated with an outbreak of acute gastroenteritis. Journal of Virology 2009, 83:10836-10839.
50. Kapoor A., Li L., Victoria J., Oderinde B., Mason C., Pandey P., et al. Multiple novel astrovirus species in human stool. Journal of General Virology 2009, 90:2965-2972.
51. Wolfaardt M., Kiulia N.M., Mwenda J.M., Taylor M.B. Evidence of a recombinant wild-type human astrovirus strain from a Kenyan child with gastroenteritis. Journal of Clinical Microbiology 2011, 49:728-731.
52. Ahmed S.F., Sebeny P.J., Klena J.D., Pimentel G., Mansour A., Naguib A.M., et al. Novel astroviruses in children, Egypt. Emerging Infectious Diseases 2011, 17:2391-2393.
53. Ulloa J.C., Gutierrez M.F. Genomic analysis of two ORF2 segments of new porcine astrovirus isolates and their close relationship with human astroviruses. Canadian Journal of Microbiology 2010, 56:569-577.