Botanical epidemiology: Some key advances and its continuing role in disease management

Plant disease epidemiology: facing challenges of the 21st Century: Under the aegis of an International Plant Disease Epidemiology Workshop held at Landernau, France, 10-15th April, 2005

Volumn , Issue , 2006, Pages 3-23

  Madden, Laurence V ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

Basic reproduction number; Bayesian decision theory; Epidemic; Mixed models; Model; Population dynamics; Receiver operating characteristic (ROC) curve

Indexed keywords

EID: 84900139945     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/1-4020-5020-8_1     Document Type: Chapter

References (69)

1. Anderson RM and May RM (1991) Infectious Diseases of Humans; Dynamics and Control, Oxford Science Publication, Oxford.
2. Auden WH and Kronenberger L (1966) The Viking Book of Aphorisms, Viking, New York.
3. Aylor DE (1999) Biophysical scaling and the passive dispersal of fungus spores: relationship to integrated pest management strategies. Agricultural and Forest Meteorology 97:275-292.
4. Bald JG (1937) Investigations on 'spotted wilt' of tomatoes III: infection in field plots. Bulletin 106. Melbourne, Australia: Council for Scientific and Industrial Research.
5. Campbell CL and Madden LV (1990) Introduction to Plant Disease Epidemiology, John Wiley & Sons, New York
6. Cochran WG (1936) The statistical analysis of field counts of diseased plants. Supplement to Journal of Royal Statistical Society 3:49-67.
7. De Wolf ED, Madden LV and Lipps PE (2003) Risk assessment models for wheat Fusarium head blight epidemics based on within-season weather data. Phytopathology 93:428-435
8. Diekmann O and Heesterbeek JAP (2000) Mathematical Epidemiology of Infectious Diseases: Model Building, Analysis, and Interpretation, John Wiley and Son, Ltd., Chichester, U. K, 303
9. Ferrandino FJ (1993) Epidemic waves: I. Focus expansion within a linear planting. Phytopathology 83:795-802
10. Fry WE (1982) Principles of Plant Disease Management, Academic Press, New York
11. Garrett KA, Madden LV, Hughes G and Pfender WF (2004) New applications of statistical tools in plant pathology. Phytopathology 94:999-1003
12. Gibson GJ (1997) Investigating mechanisms of spatiotemporal epidemic spread using stochastic models. Phytopathology 87:139-146
13. Gibson GJ, Gilligan CA and Kleczkowski A. (1999) Predicting variability in biological control of a plant-pathogen system using stochastic models. Proceedings Royal Society London B 266:1743-1753
14. Gildow F, Damsteegt B, Stone A, Schneider W, Luster D and Levy L (2004) Plum pox in North America: identification of aphid vectors and a potential role for fruit in virus spread. Phytopathology 94:868-874
15. Gilligan CA (1985). Introduction. In: Gilligan CA) Advances in Plant Pathology, Vol. 3; Mathematical Modelling of Crop Disease (pp 1-10) Academic Press, London
16. Gilligan CA (2002) An epidemiological framework for disease management. Advances in Botanical Research 38:1-64
17. Gottwald TR, Hughes G, Graham JH, Sun X and Riley T (2001) The citrus canker epidemic in Florida: the scientific basis of regulatory eradication policy for an invasive species. Phytopathology 91:30-34
18. Hardwick NV (1998). Disease forecasting. In: Jones DG (eds) The Epidemiology of Plant Diseases (pp 207-230) Kluwer Academic Publishers, Dordrecht
19. Hughes G and Madden LV (2003) Evaluating predictive models with application in regulatory policy for invasive weeds. Agricultural Systems 76:755-774
20. Hughes G, McRoberts N, Madden LV and Nelson SC (1997) Validating mathematical models of plant disease progress in space and time. IMA Journal of Mathematics Applied in Medicine and Biology 14:85-112
21. Hughes G, McRoberts N and Burnett FJ (1999) Decisionmaking and diagnosis in disease management. Plant Pathology 48:147-153
22. Hughes G, Gottwald TR and Yamamura K (2002) Survey methods for assessment of citrus tristeza virus incidence in urban citrus populations. Plant Disease 86:367-372
23. James C (2003) Global Status of Commercialized Transgenic Crops:2003, International Service for the Acquisition of Agri-Biotech Applications (ISAAA), Manila
24. Jeger MJ (1986a). The potential of analytic compared with simulation approaches to modeling in plant disease epidemiology. In: Leonard KJ and Fry WE (eds) Plant Disease Epidemiology, Vol. 1: Population Dynamics and Management (pp 255-281) Macmillan Publishing Company, NY
25. Jeger MJ (1986b) Asymptotic behaviour and threshold criteria in model plant disease epidemics. Plant Pathology 35:355-361
26. Jeger MJ (2004) Analysis of disease progress as a basis for evaluating disease management practices. Annual Review of Phytopathology 42:61-82
27. Jeger MJ, Holt J, vanden Bosch F and Madden LV (2004) Epidemiology of insect-transmitted plant viruses: modeling disease dynamics and control interventions. Physiological Entomology 29:1-14
28. Jones DG (.) (1998) The Epidemiology of Plant Diseases, Kluwer Academic Publishers, Dordrecht, 460
29. Keeling MJ, Brooks SP and Gilligan CA (2004) Using conservation of pattern to estimate spatial parameters from a single snapshot. Proceedings National Academy of Science USA 101:9155-9160
30. Kranz J (.) (1990) Epidemics of Plant Diseases: Mathematical Analysis and Modeling, 2nd edn. Springer-Verlag, Berlin
31. Legg JP (1999) Emergence, spread and strategies for controlling the pandemic of cassava mosaic virus disease in east and central Africa. Crop Protection 18:627-637
32. Linnet K (1988) A review of the methodology for assessing diagnostic tests. Clinical Chemistry 34:1379-1386
33. Madden LV (1986). Statistical analysis and comparison of disease progress curves. Pages 55-84. In: Leonard K and Fry WE (eds) Plant Disease Epidemiology (pp 372) Macmillan Publishing Co, New York
34. Madden LV and Hughes G (1995) Plant disease incidence: distributions, heterogeneity, and temporal analysis. Annual Review of Phytopathology 33:529-564
35. Madden LV and Hughes G (1999) Sampling for plant disease incidence. Phytopathology 89:1088-1103
36. Madden LV and Hughes G (2002). Plant epidemics, models, and analysis. In: El-Shaarawi A and Piegorsch W (eds) Encyclopedia of Environmetrics (pp 1557-15623) John Wiley & Sons
37. Madden LV and Ellis MA (1988). How to develop disease forecasters. In: Kranz J and Rotem J (eds) Experimental Techniques in Plant Disease Epidemiology (pp 191-208) Springer-Verlag Publishers
38. Madden LV and vanden Bosch F (2002) A populationdynamics approach to assess the threat of plant pathogens as biological weapons against annual crops. BioScience 52:65-74
39. Madden LV and Wheelis M (2003) The threat of plant pathogens as weapons against U. S. crops. Annual Review of Phytopathology 41:155-176
40. Madden LV, Pirone TP and Raccah B (1987) Temporal analysis of two viruses increasing in the same tobacco fields. Phytopathology 77:974-980
41. Madden LV, Jeger MJ and vanden Bosch F (2000) A theoretical assessment of the effects of vector-virus transmission mechanism on plant virus disease epidemics. Phytopathology 90:576-594
42. Maloy OC (1993) Plant Disease Control, John Wiley & Sons, New York
43. McRoberts N, Hughes G and Savary S (2003) Integrated approaches to understanding and control of diseases and pests in field crops. Australasian Plant Pathology 32:167-180
44. Metz CE (1978) Basic principles of ROC analysis. Seminars in Nuclear Medicine 8:283-298
45. Mila AL and Carriquiry AL (2004) Bayesan analysis in plant pathology. Phytopathology 94:1027-1030
46. Neter J, Wasserman W and Kutner MH (1983) Applied Linear Regression Models, Richard, D. Irwin, Inc, Homewood, IL, 547
47. NRC (2002). Predicting Invasions of Non-indigenous Plants and Plant Pests. National Research Council, National Academy of Sciences, National Academy Press, Washington, DC
48. Pielou EC (1977) Mathematical Ecology, John Wiley & Sons, New York
49. Rizzo DM, Garbelotto M, Davidson JM, Slaughter GW and Koike ST (2002) Phytophthora ramorum as the cause of extensive mortality of Quercus spp. and Lithocarpus densiflorus in California. Plant Disease 86:205-214
50. Ross R (1911) The Prevention of Malaria, 2nd edn. Murray, London
51. Rush CM, Stein JM, Bowden RL, Riemenschneider R, Boratynski T and Royer MH (2005) Status of Karnal bunt of wheat in the United States 1996 to 2004. Plant Disease 89:212-223
52. Schabenberger O and Pierce FJ (2002) Contemporary Statistical Models for the Plant and Soil Sciences, CRC Press, Boca Raton, Florida
53. Segarra J, Jeger MJ and vanden Bosch F (2001) Epidemic dynamics and patterns of plant diseases. Phytopathology 91:1001-1010
54. Strange RN and Scott PR (2005) Plant disease: a threat to global food security. Annual Review of Phytopathology 43: (in press)
55. Turechek WW and Wilcox WW (2005) Evaluating predictors of apple scab with receiver operating characteristic (ROC) curve analysis. Phytopathology 95:679-691
56. Twengstrom E, Sigvald R, Svensson C and Yuen J (1998) Forecasting sclerotinia stem rot in spring sown oilseed rape. Crop Protection 17:405-411
57. vanden Bosch F, Metz JAJ and Diekmann O (1990) The velocity of population expansion. Journal of Mathematical Biology 28:529-565
58. vanden Bosch F, Metz JAJ and Zadoks JC (1999) Pandemics of focal plant disease, a model. Phytopathology 89:495-505
59. van Maanen A and Xu X-M (2003) Modelling plant disease epidemics. European Journal of Plant Pathology 109:669-682
60. vander Plank JE (1963) Plant Diseases: Epidemics and Control, Academic Press, NY, 349
61. Waggoner PE (1960). Forecasting epidemics. In: Horsfall JG and Dimond AE (eds) Plant Pathology, AN Advanced Treatise (pp 291-313III) Academic Press, New York
62. Wolfinger RD (1996) Heterogeneous variance-covariance structures for repeated measures. Journal of Agricultural, Biological, and Environmental Statistics 1:205-230
63. Xu X-M and Ridout MS (1998) Effects of initial epidemic conditions, sporulation rate, and spore dispersal gradient on the spatio-temporal dynamics of plant disease epidemics. Phytopathology 88:1000-1012
64. Yuen J (2003) Bayesian approaches to plant disease forecasting. Online. Plant Health Progress doi:10.1094/PHP-2003-1113-06-RV. [http://www. plantmanagementnetwork.org/php]
65. Yuen JE and Hughes G (2002) Bayesian analysis of plant disease prediction. Plant Pathology 51:407-412
66. Yuen JE, Twengstrom E and Sigvald R (1996) Calibration and verification of risk algorithms using logistic regression. European Journal of Plant Pathology 102:847-854
67. Zadoks JC (2001) Plant disease epidemiology in the twentieth century: a picture by means of selected controversies. Plant Disease 85:808-816
68. Zadoks JC and Schein RD (1979) Epidemiology and Plant Disease Management, Oxford University Press, Oxford, 427
69. Zhang X-S, Holt J and Colvin J (2000) A general model of plant-virus disease infection incorporating vector aggregation. Plant Pathology 49:435-444